Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47562 * 2 1 4 4 C 1.35750 * 117.00008 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.86513 * 359.97438 * 4 3 2 6 6 C 1.37609 * 120.24107 * 179.97438 * 5 4 3 7 7 C 1.39834 * 119.95579 * 0.02939 * 6 5 4 8 8 C 1.47199 * 120.13584 * 179.97438 * 7 6 5 9 9 N 1.29531 * 120.00223 * 326.44096 * 8 7 6 10 10 C 1.46501 * 119.99506 * 27.95384 * 9 8 7 11 11 C 1.53001 * 109.46610 * 176.85554 * 10 9 8 12 12 C 1.50695 * 115.55083 * 67.10875 * 11 10 9 13 13 H 1.07995 * 120.00368 * 272.64206 * 12 11 10 14 14 C 1.37882 * 119.99989 * 92.64478 * 12 11 10 15 15 N 1.31512 * 119.99922 * 4.29815 * 14 12 11 16 16 Si 1.86800 * 119.99906 * 184.30455 * 14 12 11 17 17 H 1.48493 * 109.47593 * 359.97438 * 16 14 12 18 18 H 1.48510 * 109.46815 * 119.99903 * 16 14 12 19 19 H 1.48499 * 109.47132 * 239.99218 * 16 14 12 20 20 C 1.52997 * 117.49864 * 281.43692 * 11 10 9 21 21 C 1.53000 * 117.49815 * 212.77801 * 11 10 9 22 22 C 1.40294 * 119.72851 * 359.97438 * 7 6 5 23 23 O 1.35705 * 120.12062 * 180.02562 * 22 7 6 24 24 C 1.38428 * 119.76059 * 359.73141 * 22 7 6 25 25 H 1.08999 * 109.47574 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46898 * 300.00199 * 1 2 3 27 27 H 1.09001 * 109.47000 * 59.99599 * 1 2 3 28 28 H 1.08996 * 109.46818 * 239.99790 * 2 1 3 29 29 H 1.09003 * 109.46686 * 119.99981 * 2 1 3 30 30 H 1.08008 * 119.88101 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.02300 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.00094 * 146.44299 * 8 7 6 33 33 H 1.08996 * 109.47200 * 296.85316 * 10 9 8 34 34 H 1.09001 * 109.47152 * 56.85870 * 10 9 8 35 35 H 0.97004 * 119.99622 * 180.02562 * 15 14 12 36 36 H 1.09001 * 117.50150 * 0.02562 * 20 11 10 37 37 H 1.08997 * 117.50114 * 145.02799 * 20 11 10 38 38 H 1.09000 * 117.49873 * 214.98220 * 21 11 10 39 39 H 1.09005 * 117.49923 * 359.97438 * 21 11 10 40 40 H 0.96706 * 113.99638 * 95.00689 * 23 22 7 41 41 H 1.07999 * 119.97774 * 180.27545 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3523 1.5250 -0.0005 5 6 4.1971 0.4197 -0.0005 6 6 5.5625 0.5909 -0.0016 7 6 6.1045 1.8799 -0.0021 8 6 7.5645 2.0677 -0.0027 9 7 8.3264 1.2233 0.6173 10 6 7.8959 -0.1673 0.7826 11 6 9.0034 -0.9651 1.4739 12 6 9.2824 -0.5843 2.9050 13 1 9.9827 0.2075 3.1264 14 6 8.6437 -1.2468 3.9317 15 7 7.8561 -2.2661 3.6671 16 14 8.8970 -0.6962 5.6987 17 1 9.8231 0.4642 5.7278 18 1 7.5912 -0.3030 6.2867 19 1 9.4783 -1.8128 6.4865 20 6 10.1895 -1.4146 0.6184 21 6 9.1556 -2.4390 1.0926 22 6 5.2512 2.9935 -0.0020 23 8 5.7686 4.2480 -0.0030 24 6 3.8794 2.8079 -0.0071 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7798 -0.5765 0.0003 31 1 6.2150 -0.2697 -0.0020 32 1 8.0005 2.9095 -0.5200 33 1 6.9921 -0.1980 1.3910 34 1 7.6907 -0.6028 -0.1953 35 1 7.4065 -2.7320 4.3894 36 1 10.1811 -1.1417 -0.4369 37 1 11.1716 -1.4354 1.0907 38 1 9.4579 -3.1331 1.8767 39 1 8.4664 -2.8404 0.3495 40 1 5.8467 4.6405 -0.8834 41 1 3.2192 3.6626 -0.0116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797397537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = 11.672926 kcal Electronic energy + Delta-G solvation = -22599.409037 eV Core-core repulsion = 19254.070731 eV Total energy + Delta-G solvation = -3345.338306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37465 -38.73350 -37.29991 -36.01990 -34.63102 -31.97132 -31.80961 -30.09519 -29.20986 -27.08196 -25.34075 -24.08786 -22.73599 -21.79762 -20.97578 -19.83777 -19.40373 -18.40516 -17.00182 -16.45424 -16.23448 -16.07315 -15.65263 -14.72521 -14.68040 -14.21609 -14.16147 -13.68707 -13.57514 -13.33333 -12.90593 -12.84007 -12.51116 -12.20131 -12.05500 -11.71168 -11.41693 -11.17872 -10.96924 -10.89117 -10.74185 -10.69912 -10.44496 -10.09154 -9.84737 -9.30219 -8.86407 -8.73773 -8.55055 -8.28195 -7.92774 -7.68389 -5.97715 -4.01583 1.10784 1.34592 2.75850 3.01937 3.31486 3.39627 3.46050 3.73906 4.27274 4.46020 4.71657 4.72924 4.91053 4.99758 5.00864 5.08052 5.14868 5.25601 5.30764 5.47692 5.56101 5.57302 5.66226 5.78950 5.93258 6.01236 6.15649 6.22552 6.34531 6.38998 6.43485 6.57988 6.64815 6.75159 6.89634 6.99781 7.19853 7.31389 7.51359 7.66666 7.70647 7.95138 8.52265 8.58003 9.01301 9.62991 11.09842 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004611 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.346595 B = 6070.778080 C = 6694.774996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.317 6.317 4 C 0.148 3.852 5 C -0.216 4.216 6 C -0.072 4.072 7 C -0.160 4.160 8 C 0.152 3.848 9 N -0.469 5.469 10 C 0.072 3.928 11 C 0.047 3.953 12 C -0.476 4.476 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.206 4.206 21 C -0.147 4.147 22 C 0.167 3.833 23 O -0.488 6.488 24 C -0.191 4.191 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.391 0.609 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 5.955 -11.672 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.231 6.231 4 C 0.101 3.899 5 C -0.234 4.234 6 C -0.091 4.091 7 C -0.164 4.164 8 C -0.059 4.059 9 N -0.174 5.174 10 C -0.056 4.056 11 C 0.046 3.954 12 C -0.514 4.514 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.715 3.285 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.243 4.243 21 C -0.185 4.185 22 C 0.120 3.880 23 O -0.298 6.298 24 C -0.210 4.210 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.166 0.834 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.247 0.753 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.684 5.680 -10.476 16.689 hybrid contribution -0.909 -0.037 0.507 1.042 sum -12.593 5.644 -9.969 17.024 Atomic orbital electron populations 1.21774 0.92775 1.02873 1.03384 1.22825 0.95759 0.81861 1.01871 1.85992 1.19110 1.29538 1.88445 1.18843 0.82183 0.93591 0.95241 1.21238 0.94274 0.98071 1.09850 1.22344 0.95233 0.97985 0.93556 1.20487 0.96196 0.92617 1.07075 1.24405 0.87425 1.00443 0.93621 1.71798 1.38891 1.02710 1.03996 1.22435 0.99555 0.86684 0.96900 1.18672 0.91622 0.91608 0.93462 1.20461 1.24647 1.18001 0.88338 0.92169 1.24987 0.95233 0.94653 0.98752 1.70030 1.30489 1.20114 1.31742 0.86610 0.77990 0.78761 0.85173 1.19624 1.21120 1.21061 1.22946 0.95740 1.08013 0.97625 1.22513 1.00646 0.94301 1.01074 1.18079 0.89216 0.83901 0.96784 1.84802 1.84633 1.26643 1.33683 1.20476 0.94534 0.95440 1.10568 0.90318 0.91536 0.91630 0.91837 0.91638 0.85174 0.82140 0.83430 0.91089 0.92641 0.93335 0.92128 0.90631 0.89128 0.92498 0.75299 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.52 5.45 37.16 0.20 0.72 16 3 O -0.32 -4.12 10.12 -18.96 -0.19 -4.31 16 4 C 0.15 2.11 6.69 -39.08 -0.26 1.85 16 5 C -0.22 -3.18 9.01 -39.48 -0.36 -3.53 16 6 C -0.07 -1.19 7.97 -39.21 -0.31 -1.50 16 7 C -0.16 -2.62 5.78 -104.89 -0.61 -3.23 16 8 C 0.15 2.61 10.61 -14.88 -0.16 2.45 16 9 N -0.47 -10.04 10.53 -59.13 -0.62 -10.66 16 10 C 0.07 1.61 3.93 -4.04 -0.02 1.60 16 11 C 0.05 1.19 1.77 -155.66 -0.28 0.92 16 12 C -0.48 -13.55 8.82 -34.44 -0.30 -13.86 16 13 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 14 C 0.07 1.85 5.41 -17.82 -0.10 1.75 16 15 N -0.89 -25.31 12.00 55.43 0.67 -24.64 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.21 -4.72 9.96 -26.70 -0.27 -4.99 16 21 C -0.15 -3.53 8.86 -26.69 -0.24 -3.77 16 22 C 0.17 2.41 6.71 -38.74 -0.26 2.15 16 23 O -0.49 -5.93 12.92 -18.82 -0.24 -6.18 16 24 C -0.19 -2.64 9.91 -39.34 -0.39 -3.03 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 29 H 0.07 0.66 7.65 -51.93 -0.40 0.27 16 30 H 0.13 1.67 6.27 -52.48 -0.33 1.34 16 31 H 0.16 2.81 3.63 -52.49 -0.19 2.61 16 32 H 0.15 2.03 8.02 -52.49 -0.42 1.61 16 33 H 0.07 1.72 6.07 -51.93 -0.32 1.41 16 34 H 0.06 1.12 6.71 -51.93 -0.35 0.77 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.09 2.36 7.71 -51.93 -0.40 1.96 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.39 2.49 9.06 45.56 0.41 2.90 16 41 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -32.88 343.40 -8.08 -40.96 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.89 Total: 5.85 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.95 Total: -23.24 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.04 Total: -35.30 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.44 Total: -10.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.88 -8.08 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.636 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds