Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47562 * 2 1 4 4 C 1.35750 * 117.00008 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.86513 * 359.97438 * 4 3 2 6 6 C 1.37609 * 120.24107 * 179.97438 * 5 4 3 7 7 C 1.39834 * 119.95579 * 0.02939 * 6 5 4 8 8 C 1.47199 * 120.13584 * 179.97438 * 7 6 5 9 9 N 1.29531 * 120.00223 * 326.44096 * 8 7 6 10 10 C 1.46501 * 119.99506 * 27.95384 * 9 8 7 11 11 C 1.53001 * 109.46610 * 176.85554 * 10 9 8 12 12 C 1.50695 * 115.55083 * 67.10875 * 11 10 9 13 13 H 1.07995 * 120.00368 * 272.64206 * 12 11 10 14 14 C 1.37882 * 119.99989 * 92.64478 * 12 11 10 15 15 N 1.31512 * 119.99922 * 4.29815 * 14 12 11 16 16 Si 1.86800 * 119.99906 * 184.30455 * 14 12 11 17 17 H 1.48493 * 109.47593 * 359.97438 * 16 14 12 18 18 H 1.48510 * 109.46815 * 119.99903 * 16 14 12 19 19 H 1.48499 * 109.47132 * 239.99218 * 16 14 12 20 20 C 1.52997 * 117.49864 * 281.43692 * 11 10 9 21 21 C 1.53000 * 117.49815 * 212.77801 * 11 10 9 22 22 C 1.40294 * 119.72851 * 359.97438 * 7 6 5 23 23 O 1.35705 * 120.12062 * 180.02562 * 22 7 6 24 24 C 1.38428 * 119.76059 * 359.73141 * 22 7 6 25 25 H 1.08999 * 109.47574 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46898 * 300.00199 * 1 2 3 27 27 H 1.09001 * 109.47000 * 59.99599 * 1 2 3 28 28 H 1.08996 * 109.46818 * 239.99790 * 2 1 3 29 29 H 1.09003 * 109.46686 * 119.99981 * 2 1 3 30 30 H 1.08008 * 119.88101 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.02300 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.00094 * 146.44299 * 8 7 6 33 33 H 1.08996 * 109.47200 * 296.85316 * 10 9 8 34 34 H 1.09001 * 109.47152 * 56.85870 * 10 9 8 35 35 H 0.97004 * 119.99622 * 180.02562 * 15 14 12 36 36 H 1.09001 * 117.50150 * 0.02562 * 20 11 10 37 37 H 1.08997 * 117.50114 * 145.02799 * 20 11 10 38 38 H 1.09000 * 117.49873 * 214.98220 * 21 11 10 39 39 H 1.09005 * 117.49923 * 359.97438 * 21 11 10 40 40 H 0.96706 * 113.99638 * 95.00689 * 23 22 7 41 41 H 1.07999 * 119.97774 * 180.27545 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3523 1.5250 -0.0005 5 6 4.1971 0.4197 -0.0005 6 6 5.5625 0.5909 -0.0016 7 6 6.1045 1.8799 -0.0021 8 6 7.5645 2.0677 -0.0027 9 7 8.3264 1.2233 0.6173 10 6 7.8959 -0.1673 0.7826 11 6 9.0034 -0.9651 1.4739 12 6 9.2824 -0.5843 2.9050 13 1 9.9827 0.2075 3.1264 14 6 8.6437 -1.2468 3.9317 15 7 7.8561 -2.2661 3.6671 16 14 8.8970 -0.6962 5.6987 17 1 9.8231 0.4642 5.7278 18 1 7.5912 -0.3030 6.2867 19 1 9.4783 -1.8128 6.4865 20 6 10.1895 -1.4146 0.6184 21 6 9.1556 -2.4390 1.0926 22 6 5.2512 2.9935 -0.0020 23 8 5.7686 4.2480 -0.0030 24 6 3.8794 2.8079 -0.0071 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7798 -0.5765 0.0003 31 1 6.2150 -0.2697 -0.0020 32 1 8.0005 2.9095 -0.5200 33 1 6.9921 -0.1980 1.3910 34 1 7.6907 -0.6028 -0.1953 35 1 7.4065 -2.7320 4.3894 36 1 10.1811 -1.1417 -0.4369 37 1 11.1716 -1.4354 1.0907 38 1 9.4579 -3.1331 1.8767 39 1 8.4664 -2.8404 0.3495 40 1 5.8467 4.6405 -0.8834 41 1 3.2192 3.6626 -0.0116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797397537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = -10.926481 kcal Electronic energy + Delta-G solvation = -22600.389021 eV Core-core repulsion = 19254.070731 eV Total energy + Delta-G solvation = -3346.318290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46542 -39.80889 -38.84046 -37.37225 -35.98953 -33.94653 -32.79537 -31.18419 -30.43691 -28.63176 -27.40701 -24.96908 -24.03476 -22.93814 -22.68112 -21.33932 -20.92160 -19.67879 -18.07843 -17.98541 -17.38602 -17.12105 -17.05922 -16.69124 -15.87409 -15.81134 -15.34934 -15.16166 -15.09476 -14.32261 -14.19702 -14.11185 -13.60437 -13.39631 -13.28788 -13.10486 -12.92075 -12.77683 -12.67296 -12.44256 -12.15149 -12.00329 -11.94183 -11.66855 -11.49990 -11.08381 -10.68421 -10.39867 -10.15316 -9.88749 -9.56671 -8.98903 -8.11592 -6.20531 -0.06970 0.21367 1.32518 1.35423 1.44264 1.46772 2.08785 2.39386 2.60502 3.14699 3.27660 3.44447 3.68908 3.79742 3.89493 3.97129 4.02116 4.11384 4.27734 4.33377 4.36928 4.40780 4.52195 4.56410 4.74425 4.81009 4.88281 4.92298 4.96063 5.02639 5.08509 5.17561 5.20254 5.28263 5.29955 5.52692 5.59676 5.65611 5.77105 5.77977 6.30796 6.46267 6.84105 6.87891 7.12115 7.45667 8.94999 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004611 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.346595 B = 6070.778080 C = 6694.774996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.323 6.323 4 C 0.152 3.848 5 C -0.226 4.226 6 C -0.082 4.082 7 C -0.191 4.191 8 C 0.181 3.819 9 N -0.527 5.527 10 C 0.095 3.905 11 C 0.018 3.982 12 C -0.494 4.494 13 H 0.038 0.962 14 C 0.024 3.976 15 N -0.905 5.905 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.187 4.187 21 C -0.146 4.146 22 C 0.185 3.815 23 O -0.493 6.493 24 C -0.197 4.197 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.184 0.816 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.259 0.741 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.418 0.582 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 7.190 -12.651 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.236 6.236 4 C 0.105 3.895 5 C -0.244 4.244 6 C -0.101 4.101 7 C -0.194 4.194 8 C -0.029 4.029 9 N -0.233 5.233 10 C -0.033 4.033 11 C 0.018 3.982 12 C -0.532 4.532 13 H 0.056 0.944 14 C -0.176 4.176 15 N -0.544 5.544 16 Si 0.767 3.233 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.225 4.225 21 C -0.184 4.184 22 C 0.137 3.863 23 O -0.307 6.307 24 C -0.216 4.216 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.280 0.720 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.051 6.928 -11.482 18.712 hybrid contribution -0.593 -0.311 0.731 0.992 sum -13.643 6.616 -10.751 18.587 Atomic orbital electron populations 1.21800 0.90818 1.04267 1.03461 1.23128 0.97336 0.80612 1.02250 1.86005 1.18224 1.31409 1.87997 1.18992 0.82788 0.93660 0.94028 1.21356 0.93747 0.99145 1.10191 1.22247 0.95869 0.97792 0.94241 1.20542 0.96040 0.93329 1.09521 1.24982 0.87866 0.99807 0.90205 1.71754 1.40517 1.02835 1.08187 1.22033 0.96829 0.87782 0.96705 1.18861 0.93837 0.92645 0.92891 1.20623 1.24452 1.17518 0.90644 0.94355 1.25581 0.95221 0.94823 1.01940 1.70107 1.31011 1.20674 1.32605 0.85774 0.77777 0.78417 0.81350 1.19913 1.20864 1.20056 1.22903 0.94612 1.06364 0.98574 1.22388 1.01613 0.93534 1.00868 1.18006 0.89154 0.84139 0.95008 1.84736 1.84367 1.25437 1.36156 1.20719 0.94636 0.95985 1.10240 0.88280 0.91892 0.91094 0.90670 0.92081 0.83938 0.83748 0.79932 0.94061 0.91132 0.93240 0.89593 0.91411 0.91854 0.90562 0.72044 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.76 5.45 71.98 0.39 1.15 16 3 O -0.32 -7.82 10.12 -90.76 -0.92 -8.74 16 4 C 0.15 4.11 6.69 22.59 0.15 4.26 16 5 C -0.23 -6.51 9.01 22.33 0.20 -6.31 16 6 C -0.08 -2.70 7.97 22.51 0.18 -2.52 16 7 C -0.19 -6.03 5.78 -20.04 -0.12 -6.15 16 8 C 0.18 5.99 10.61 87.39 0.93 6.92 16 9 N -0.53 -22.53 10.53 -340.98 -3.59 -26.12 16 10 C 0.09 4.30 3.93 86.38 0.34 4.64 16 11 C 0.02 0.95 1.77 -52.93 -0.09 0.85 16 12 C -0.49 -28.87 8.82 25.60 0.23 -28.64 16 13 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 14 C 0.02 1.37 5.41 84.66 0.46 1.83 16 15 N -0.91 -52.70 12.00 21.45 0.26 -52.45 16 16 Si 0.94 45.98 29.54 68.60 2.03 48.01 16 17 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 C -0.19 -8.57 9.96 30.62 0.30 -8.27 16 21 C -0.15 -7.09 8.86 30.62 0.27 -6.82 16 22 C 0.18 4.90 6.71 22.82 0.15 5.06 16 23 O -0.49 -10.45 12.92 -90.26 -1.17 -11.62 16 24 C -0.20 -5.01 9.91 22.42 0.22 -4.78 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.20 7.65 -2.39 -0.02 1.18 16 29 H 0.06 1.17 7.65 -2.39 -0.02 1.16 16 30 H 0.14 3.59 6.27 -2.91 -0.02 3.57 16 31 H 0.15 5.17 3.63 -2.91 -0.01 5.16 16 32 H 0.18 4.51 8.02 -2.91 -0.02 4.49 16 33 H 0.04 2.08 6.07 -2.39 -0.01 2.07 16 34 H 0.07 2.86 6.71 -2.39 -0.02 2.85 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.06 3.39 7.71 -2.39 -0.02 3.37 16 39 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.42 3.76 9.06 -74.05 -0.67 3.09 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.53 343.40 1.34 -70.18 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.38 Total: 20.69 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 4.36 Total: -39.95 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -3.33 Total: -78.57 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -2.08 Total: -20.36 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.53 1.34 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.255 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds