Wall clock time and date at job start Tue Mar 31 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46854 * 2 1 4 4 C 1.36001 * 116.99599 * 180.02562 * 3 2 1 5 5 C 1.38523 * 120.00370 * 359.71434 * 4 3 2 6 6 C 1.38465 * 120.33555 * 179.72005 * 5 4 3 7 7 C 1.37829 * 120.33632 * 0.56491 * 6 5 4 8 8 C 1.39762 * 119.99598 * 359.72202 * 7 6 5 9 9 C 1.47392 * 120.16629 * 180.02562 * 8 7 6 10 10 N 1.29427 * 119.99865 * 174.94947 * 9 8 7 11 11 C 1.46504 * 119.99732 * 184.88073 * 10 9 8 12 12 C 1.53007 * 109.46858 * 114.39877 * 11 10 9 13 13 C 1.50705 * 115.54379 * 185.83732 * 12 11 10 14 14 H 1.08006 * 119.99709 * 144.32391 * 13 12 11 15 15 C 1.37872 * 120.00375 * 324.31770 * 13 12 11 16 16 N 1.31516 * 119.99827 * 3.71020 * 15 13 12 17 17 Si 1.86797 * 120.00152 * 183.70418 * 15 13 12 18 18 H 1.48497 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47419 * 120.00117 * 17 15 13 20 20 H 1.48502 * 109.47105 * 240.00357 * 17 15 13 21 21 C 1.52997 * 117.50167 * 40.16432 * 12 11 10 22 22 C 1.52996 * 117.49728 * 331.50234 * 12 11 10 23 23 C 1.39072 * 120.00106 * 180.02562 * 4 3 2 24 24 O 1.35810 * 120.16251 * 0.02562 * 23 4 3 25 25 H 1.08997 * 109.47284 * 300.00397 * 1 2 3 26 26 H 1.08993 * 109.46758 * 60.00502 * 1 2 3 27 27 H 1.08994 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46661 * 119.99431 * 2 1 3 29 29 H 1.08997 * 109.47284 * 239.99603 * 2 1 3 30 30 H 1.07998 * 119.83032 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.83471 * 180.28196 * 6 5 4 32 32 H 1.08002 * 120.00196 * 179.69473 * 7 6 5 33 33 H 1.07996 * 120.00294 * 354.94066 * 9 8 7 34 34 H 1.09005 * 109.47019 * 234.39101 * 11 10 9 35 35 H 1.08994 * 109.47187 * 354.39566 * 11 10 9 36 36 H 0.97001 * 120.00052 * 184.99671 * 16 15 13 37 37 H 1.08998 * 117.49716 * 0.02562 * 21 12 11 38 38 H 1.08996 * 117.49428 * 145.01983 * 21 12 11 39 39 H 1.09000 * 117.49882 * 214.97935 * 22 12 11 40 40 H 1.09001 * 117.50103 * 359.97438 * 22 12 11 41 41 H 0.96693 * 113.99784 * 90.00804 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1985 0.4270 0.0049 6 6 5.5722 0.6004 -0.0014 7 6 6.1139 1.8678 -0.0015 8 6 5.2755 2.9860 -0.0011 9 6 5.8508 4.3430 -0.0017 10 7 5.0753 5.3745 -0.1000 11 6 5.6521 6.7169 -0.2084 12 6 5.3212 7.3047 -1.5817 13 6 5.9654 8.6311 -1.8932 14 1 6.2885 8.8513 -2.9000 15 6 6.1423 9.5634 -0.8930 16 7 5.8160 9.2682 0.3463 17 14 6.8454 11.2459 -1.2982 18 1 7.1281 11.3268 -2.7538 19 1 5.8632 12.2956 -0.9262 20 1 8.1035 11.4530 -0.5369 21 6 3.9189 7.0521 -2.1391 22 6 5.1244 6.3254 -2.7405 23 6 3.8862 2.8106 0.0000 24 8 3.0621 3.8900 0.0015 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.7828 -0.5698 0.0100 31 1 6.2226 -0.2618 -0.0017 32 1 7.1862 1.9968 -0.0015 33 1 6.9193 4.4766 0.0799 34 1 5.2349 7.3556 0.5703 35 1 6.7339 6.6582 -0.0893 36 1 5.8719 9.9466 1.0373 37 1 3.2320 6.4675 -1.5273 38 1 3.4625 7.8451 -2.7314 39 1 5.4605 6.6405 -3.7284 40 1 5.2312 5.2623 -2.5247 41 1 2.8243 4.2020 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797397821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:55 Heat of formation + Delta-G solvation = -1.786173 kcal Electronic energy + Delta-G solvation = -22587.323051 eV Core-core repulsion = 19241.401115 eV Total energy + Delta-G solvation = -3345.921936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26711 -38.06998 -36.96860 -36.12177 -34.22464 -32.17077 -31.94099 -30.34670 -28.89869 -26.44446 -25.47778 -23.97362 -22.53180 -21.86571 -20.96549 -19.94790 -18.62037 -17.89969 -17.48614 -16.29569 -16.22411 -16.05622 -15.26770 -14.79954 -14.50654 -14.09694 -13.96238 -13.78166 -13.44721 -13.09518 -12.80751 -12.45021 -12.41772 -12.10439 -11.97872 -11.80337 -11.35833 -11.13028 -11.05638 -10.97267 -10.77047 -10.40367 -10.22142 -10.07456 -10.05672 -9.36374 -9.01116 -8.71497 -8.31660 -8.10321 -8.01447 -7.90224 -6.05598 -4.14200 1.05984 1.45988 3.01166 3.12229 3.24536 3.32713 3.37510 3.95205 4.33171 4.46892 4.70582 4.72715 4.80429 4.95749 5.01676 5.04024 5.19665 5.28338 5.35269 5.51931 5.58648 5.62552 5.70389 5.84439 6.02169 6.18189 6.32695 6.37009 6.43533 6.58084 6.60240 6.66096 6.84412 6.89086 7.08470 7.23578 7.34390 7.43489 7.58819 7.67840 8.00851 8.20453 8.37314 8.68872 8.87088 9.47282 10.92779 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.003514 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.144296 B = 7965.640848 C = 8455.245581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.306 6.306 4 C 0.094 3.906 5 C -0.199 4.199 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.035 4.035 9 C 0.114 3.886 10 N -0.451 5.451 11 C 0.073 3.927 12 C 0.057 3.943 13 C -0.482 4.482 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.190 4.190 22 C -0.211 4.211 23 C 0.114 3.886 24 O -0.454 6.454 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 -19.387 3.296 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.048 3.952 5 C -0.219 4.219 6 C -0.116 4.116 7 C -0.146 4.146 8 C -0.036 4.036 9 C -0.096 4.096 10 N -0.160 5.160 11 C -0.054 4.054 12 C 0.056 3.944 13 C -0.520 4.520 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.228 4.228 22 C -0.249 4.249 23 C 0.065 3.935 24 O -0.262 6.262 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.156 0.844 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.062 -18.756 2.843 19.634 hybrid contribution 1.292 0.676 0.263 1.481 sum -3.770 -18.080 3.106 18.728 Atomic orbital electron populations 1.21760 0.92854 1.02551 1.03711 1.22754 0.95865 0.82515 1.01045 1.86174 1.18563 1.28496 1.88770 1.19425 0.82729 0.93684 0.99351 1.21111 0.94305 0.97425 1.09087 1.20738 0.94044 0.97087 0.99716 1.21054 0.99710 0.91199 1.02666 1.19257 0.91444 0.93267 0.99645 1.23760 0.95274 0.90550 1.00032 1.71909 1.39914 1.02122 1.02013 1.22519 0.96547 0.85412 1.00940 1.18907 0.94517 0.93170 0.87825 1.20706 1.38320 0.97896 0.95076 0.91869 1.25015 0.94839 0.99007 0.94705 1.69721 1.49150 1.33200 1.00630 0.86392 0.78678 0.83549 0.78588 1.19689 1.20767 1.20906 1.22925 0.92846 1.01965 1.05031 1.22864 1.06478 0.96806 0.98712 1.17906 0.88363 0.84283 1.02958 1.84912 1.65200 1.43880 1.32190 0.91528 0.91401 0.90604 0.92326 0.92253 0.85638 0.85709 0.85272 0.88976 0.84367 0.95369 0.92711 0.89996 0.91394 0.91453 0.91382 0.76185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -4.23 9.92 -34.32 -0.34 -4.57 16 4 C 0.09 1.35 6.69 -39.17 -0.26 1.09 16 5 C -0.20 -2.33 9.03 -39.39 -0.36 -2.69 16 6 C -0.10 -1.08 10.02 -39.65 -0.40 -1.48 16 7 C -0.13 -1.61 9.78 -39.16 -0.38 -1.99 16 8 C -0.03 -0.55 5.88 -104.93 -0.62 -1.17 16 9 C 0.11 2.10 10.08 -14.84 -0.15 1.95 16 10 N -0.45 -9.66 6.57 -59.08 -0.39 -10.04 16 11 C 0.07 1.82 5.44 -4.04 -0.02 1.79 16 12 C 0.06 1.48 2.45 -155.66 -0.38 1.10 16 13 C -0.48 -13.48 9.06 -34.44 -0.31 -13.79 16 14 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 15 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 16 N -0.89 -24.56 10.32 55.43 0.57 -23.99 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.19 -4.75 9.65 -26.69 -0.26 -5.01 16 22 C -0.21 -5.13 9.61 -26.70 -0.26 -5.38 16 23 C 0.11 1.88 6.73 -38.60 -0.26 1.62 16 24 O -0.45 -8.16 11.18 -33.72 -0.38 -8.54 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 29 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 30 H 0.13 1.13 6.27 -52.49 -0.33 0.80 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.09 1.57 7.76 -52.49 -0.41 1.17 16 34 H 0.14 3.75 5.93 -51.93 -0.31 3.44 16 35 H 0.03 0.71 7.69 -51.93 -0.40 0.31 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.08 2.05 7.78 -51.93 -0.40 1.64 16 38 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.07 1.62 7.10 -51.93 -0.37 1.25 16 41 H 0.38 5.72 9.06 45.56 0.41 6.13 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -30.85 344.27 -8.64 -39.49 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.10 Total: 8.80 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.16 Total: -22.34 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.18 Total: -34.03 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.72 Total: -13.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -8.64 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.701 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds