Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46854 * 2 1 4 4 C 1.36001 * 116.99599 * 180.02562 * 3 2 1 5 5 C 1.38523 * 120.00370 * 359.71434 * 4 3 2 6 6 C 1.38465 * 120.33555 * 179.72005 * 5 4 3 7 7 C 1.37829 * 120.33632 * 0.56491 * 6 5 4 8 8 C 1.39762 * 119.99598 * 359.72202 * 7 6 5 9 9 C 1.47392 * 120.16629 * 180.02562 * 8 7 6 10 10 N 1.29427 * 119.99865 * 174.94947 * 9 8 7 11 11 C 1.46504 * 119.99732 * 184.88073 * 10 9 8 12 12 C 1.53007 * 109.46858 * 114.39877 * 11 10 9 13 13 C 1.50705 * 115.54379 * 185.83732 * 12 11 10 14 14 H 1.08006 * 119.99709 * 144.32391 * 13 12 11 15 15 C 1.37872 * 120.00375 * 324.31770 * 13 12 11 16 16 N 1.31516 * 119.99827 * 3.71020 * 15 13 12 17 17 Si 1.86797 * 120.00152 * 183.70418 * 15 13 12 18 18 H 1.48497 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47419 * 120.00117 * 17 15 13 20 20 H 1.48502 * 109.47105 * 240.00357 * 17 15 13 21 21 C 1.52997 * 117.50167 * 40.16432 * 12 11 10 22 22 C 1.52996 * 117.49728 * 331.50234 * 12 11 10 23 23 C 1.39072 * 120.00106 * 180.02562 * 4 3 2 24 24 O 1.35810 * 120.16251 * 0.02562 * 23 4 3 25 25 H 1.08997 * 109.47284 * 300.00397 * 1 2 3 26 26 H 1.08993 * 109.46758 * 60.00502 * 1 2 3 27 27 H 1.08994 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46661 * 119.99431 * 2 1 3 29 29 H 1.08997 * 109.47284 * 239.99603 * 2 1 3 30 30 H 1.07998 * 119.83032 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.83471 * 180.28196 * 6 5 4 32 32 H 1.08002 * 120.00196 * 179.69473 * 7 6 5 33 33 H 1.07996 * 120.00294 * 354.94066 * 9 8 7 34 34 H 1.09005 * 109.47019 * 234.39101 * 11 10 9 35 35 H 1.08994 * 109.47187 * 354.39566 * 11 10 9 36 36 H 0.97001 * 120.00052 * 184.99671 * 16 15 13 37 37 H 1.08998 * 117.49716 * 0.02562 * 21 12 11 38 38 H 1.08996 * 117.49428 * 145.01983 * 21 12 11 39 39 H 1.09000 * 117.49882 * 214.97935 * 22 12 11 40 40 H 1.09001 * 117.50103 * 359.97438 * 22 12 11 41 41 H 0.96693 * 113.99784 * 90.00804 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1985 0.4270 0.0049 6 6 5.5722 0.6004 -0.0014 7 6 6.1139 1.8678 -0.0015 8 6 5.2755 2.9860 -0.0011 9 6 5.8508 4.3430 -0.0017 10 7 5.0753 5.3745 -0.1000 11 6 5.6521 6.7169 -0.2084 12 6 5.3212 7.3047 -1.5817 13 6 5.9654 8.6311 -1.8932 14 1 6.2885 8.8513 -2.9000 15 6 6.1423 9.5634 -0.8930 16 7 5.8160 9.2682 0.3463 17 14 6.8454 11.2459 -1.2982 18 1 7.1281 11.3268 -2.7538 19 1 5.8632 12.2956 -0.9262 20 1 8.1035 11.4530 -0.5369 21 6 3.9189 7.0521 -2.1391 22 6 5.1244 6.3254 -2.7405 23 6 3.8862 2.8106 0.0000 24 8 3.0621 3.8900 0.0015 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.7828 -0.5698 0.0100 31 1 6.2226 -0.2618 -0.0017 32 1 7.1862 1.9968 -0.0015 33 1 6.9193 4.4766 0.0799 34 1 5.2349 7.3556 0.5703 35 1 6.7339 6.6582 -0.0893 36 1 5.8719 9.9466 1.0373 37 1 3.2320 6.4675 -1.5273 38 1 3.4625 7.8451 -2.7314 39 1 5.4605 6.6405 -3.7284 40 1 5.2312 5.2623 -2.5247 41 1 2.8243 4.2020 0.8853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797397821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -20.406581 kcal Electronic energy + Delta-G solvation = -22588.130492 eV Core-core repulsion = 19241.401115 eV Total energy + Delta-G solvation = -3346.729378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29410 -39.32223 -38.65578 -37.27805 -35.82353 -34.24806 -32.69768 -31.55126 -29.90572 -28.22169 -27.37641 -24.97835 -23.63865 -22.97994 -22.93617 -21.32754 -20.41356 -19.08809 -18.57046 -18.26016 -17.27736 -17.07456 -16.65985 -16.27518 -16.00192 -15.59213 -15.50330 -15.07390 -14.63527 -14.29839 -14.08156 -13.97260 -13.46625 -13.35078 -13.10076 -13.03529 -12.89247 -12.81585 -12.60811 -12.29961 -12.06513 -12.01122 -11.93400 -11.56807 -11.43074 -11.22334 -10.86276 -10.66349 -10.15127 -9.85189 -9.33233 -9.02872 -8.09997 -6.28901 -0.08612 0.44677 1.39811 1.41705 1.54015 1.68790 2.25327 2.37925 2.83474 2.96891 3.33328 3.46707 3.62086 3.88673 4.08834 4.09232 4.20381 4.27348 4.34893 4.36751 4.43108 4.52465 4.58094 4.63942 4.77671 4.88873 4.93461 4.95681 4.98501 5.13460 5.20185 5.23154 5.35724 5.41503 5.45065 5.52588 5.57958 5.62012 5.80546 5.98828 6.31952 6.41702 6.73826 7.02368 7.12157 7.36007 8.86024 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.003514 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.144296 B = 7965.640848 C = 8455.245581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.081 3.919 5 C -0.184 4.184 6 C -0.087 4.087 7 C -0.119 4.119 8 C -0.065 4.065 9 C 0.137 3.863 10 N -0.485 5.485 11 C 0.094 3.906 12 C 0.032 3.968 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.023 3.977 16 N -0.907 5.907 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.275 1.275 21 C -0.187 4.187 22 C -0.192 4.192 23 C 0.085 3.915 24 O -0.478 6.478 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.159 0.841 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.008 0.992 36 H 0.265 0.735 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -22.198 3.200 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.035 3.965 5 C -0.204 4.204 6 C -0.105 4.105 7 C -0.139 4.139 8 C -0.067 4.067 9 C -0.073 4.073 10 N -0.193 5.193 11 C -0.035 4.035 12 C 0.031 3.969 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.177 4.177 16 N -0.546 5.546 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.225 4.225 22 C -0.229 4.229 23 C 0.037 3.963 24 O -0.287 6.287 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.231 -21.588 2.747 22.170 hybrid contribution 1.007 1.267 0.333 1.652 sum -3.224 -20.321 3.080 20.804 Atomic orbital electron populations 1.21806 0.91993 1.04140 1.02788 1.23102 0.96665 0.80824 1.02498 1.86155 1.18429 1.31338 1.88806 1.19516 0.83567 0.93573 0.99822 1.21564 0.94448 0.98029 1.06341 1.21229 0.94297 0.97614 0.97328 1.21393 1.00604 0.90863 1.01019 1.19269 0.91855 0.92743 1.02807 1.24266 0.95908 0.91209 0.95966 1.71965 1.39601 1.01084 1.06631 1.22000 0.94858 0.87361 0.99250 1.19077 0.94968 0.93454 0.89359 1.20937 1.39614 0.99439 0.95070 0.92667 1.25791 0.94945 1.02456 0.94498 1.69908 1.49238 1.34187 1.01236 0.85373 0.78113 0.78965 0.78393 1.19421 1.20221 1.20102 1.22809 0.92658 1.01987 1.05044 1.22768 1.05287 0.96607 0.98270 1.18266 0.88654 0.84860 1.04555 1.84869 1.65861 1.45087 1.32932 0.92168 0.92642 0.87701 0.90397 0.90989 0.82305 0.81453 0.82898 0.87814 0.87419 0.97335 0.92525 0.90457 0.91690 0.90934 0.91013 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.33 -8.91 9.92 -79.62 -0.79 -9.70 16 4 C 0.08 2.22 6.69 22.54 0.15 2.37 16 5 C -0.18 -3.60 9.03 22.39 0.20 -3.40 16 6 C -0.09 -1.52 10.02 22.23 0.22 -1.30 16 7 C -0.12 -2.66 9.78 22.54 0.22 -2.44 16 8 C -0.07 -2.04 5.88 -20.06 -0.12 -2.16 16 9 C 0.14 5.07 10.08 87.46 0.88 5.95 16 10 N -0.48 -21.59 6.57 -340.83 -2.24 -23.83 16 11 C 0.09 4.86 5.44 86.38 0.47 5.33 16 12 C 0.03 1.74 2.45 -52.93 -0.13 1.62 16 13 C -0.51 -29.47 9.06 25.60 0.23 -29.24 16 14 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 15 C 0.02 1.27 5.39 84.65 0.46 1.72 16 16 N -0.91 -51.61 10.32 21.45 0.22 -51.39 16 17 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 C -0.19 -9.68 9.65 30.62 0.30 -9.38 16 22 C -0.19 -9.49 9.61 30.62 0.29 -9.19 16 23 C 0.08 2.82 6.73 22.91 0.15 2.97 16 24 O -0.48 -18.09 11.18 -77.48 -0.87 -18.96 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.96 7.65 -2.39 -0.02 0.94 16 29 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 30 H 0.16 2.01 6.27 -2.91 -0.02 1.99 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.10 3.53 7.76 -2.91 -0.02 3.50 16 34 H 0.11 6.19 5.93 -2.38 -0.01 6.17 16 35 H 0.01 0.45 7.69 -2.39 -0.02 0.43 16 36 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 37 H 0.08 4.03 7.78 -2.39 -0.02 4.01 16 38 H 0.06 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.07 3.46 7.10 -2.39 -0.02 3.44 16 41 H 0.39 12.61 9.06 -74.06 -0.67 11.94 16 Total: -1.00 -69.41 344.27 3.19 -66.22 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.37 Total: 29.31 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.47 Total: -37.35 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.02 Total: -75.21 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.66 Total: -28.65 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.41 3.19 -66.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797397821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.818 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds