Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47299 * 2 1 4 4 C 1.35987 * 117.00291 * 179.97438 * 3 2 1 5 5 C 1.38937 * 119.90672 * 359.97438 * 4 3 2 6 6 C 1.38079 * 120.33528 * 179.97438 * 5 4 3 7 7 C 1.38611 * 120.15423 * 0.02562 * 6 5 4 8 8 O 1.35788 * 120.09317 * 179.97438 * 7 6 5 9 9 C 1.40113 * 119.81784 * 359.97438 * 7 6 5 10 10 C 1.47387 * 120.17001 * 180.02562 * 9 7 6 11 11 N 1.29427 * 119.99916 * 209.28639 * 10 9 7 12 12 C 1.46498 * 120.00370 * 9.51189 * 11 10 9 13 13 C 1.52991 * 109.47436 * 139.39835 * 12 11 10 14 14 C 1.50709 * 115.55167 * 300.69432 * 13 12 11 15 15 H 1.07994 * 120.00230 * 145.08293 * 14 13 12 16 16 C 1.37882 * 119.99392 * 325.09018 * 14 13 12 17 17 N 1.31514 * 120.00196 * 2.32497 * 16 14 13 18 18 Si 1.86802 * 119.99601 * 182.32006 * 16 14 13 19 19 H 1.48497 * 109.46885 * 90.00358 * 18 16 14 20 20 H 1.48499 * 109.47096 * 209.99989 * 18 16 14 21 21 H 1.48502 * 109.47311 * 330.00104 * 18 16 14 22 22 C 1.52999 * 117.50177 * 155.02437 * 13 12 11 23 23 C 1.53002 * 117.50308 * 86.36482 * 13 12 11 24 24 C 1.38263 * 119.90873 * 179.72442 * 4 3 2 25 25 H 1.09000 * 109.47661 * 300.00915 * 1 2 3 26 26 H 1.09001 * 109.46609 * 60.00375 * 1 2 3 27 27 H 1.08996 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47522 * 239.99126 * 2 1 3 29 29 H 1.09004 * 109.46665 * 119.98854 * 2 1 3 30 30 H 1.07998 * 119.83359 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.92668 * 179.97438 * 6 5 4 32 32 H 0.96702 * 113.99838 * 84.99411 * 8 7 6 33 33 H 1.07995 * 119.99782 * 29.28729 * 10 9 7 34 34 H 1.09008 * 109.47010 * 259.39956 * 12 11 10 35 35 H 1.09001 * 109.46899 * 19.39360 * 12 11 10 36 36 H 0.97004 * 119.99624 * 180.02562 * 17 16 14 37 37 H 1.08998 * 117.49887 * 0.02562 * 22 13 12 38 38 H 1.09004 * 117.49979 * 145.01927 * 22 13 12 39 39 H 1.09007 * 117.49897 * 214.98144 * 23 13 12 40 40 H 1.08999 * 117.49528 * 359.97438 * 23 13 12 41 41 H 1.08000 * 120.07977 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1991 0.4222 0.0016 6 6 5.5693 0.5929 0.0016 7 6 6.1121 1.8684 0.0011 8 8 7.4597 2.0348 0.0017 9 6 5.2663 2.9854 0.0001 10 6 5.8351 4.3451 -0.0011 11 7 5.1829 5.3199 0.5463 12 6 3.9868 5.0434 1.3457 13 6 3.9813 5.9426 2.5834 14 6 5.1663 5.7910 3.5022 15 1 5.5605 6.6519 4.0216 16 6 5.7472 4.5532 3.6794 17 7 5.2964 3.5135 3.0120 18 14 7.1747 4.3530 4.8676 19 1 6.6521 4.0255 6.2184 20 1 8.0583 3.2553 4.3992 21 1 7.9484 5.6190 4.9296 22 6 2.6272 6.2562 3.2229 23 6 3.3731 7.3391 2.4395 24 6 3.8809 2.8039 -0.0052 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 3.7818 -0.5739 0.0016 31 1 6.2197 -0.2693 0.0029 32 1 7.8599 2.0060 -0.8782 33 1 6.7961 4.5281 -0.4586 34 1 3.0967 5.2419 0.7484 35 1 3.9906 3.9984 1.6557 36 1 5.7049 2.6426 3.1371 37 1 1.7403 5.8215 2.7621 38 1 2.5935 6.3532 4.3081 39 1 3.8299 8.1482 3.0096 40 1 2.9773 7.6174 1.4628 41 1 3.2229 3.6603 -0.0105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797399192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = 6.085493 kcal Electronic energy + Delta-G solvation = -23592.849134 eV Core-core repulsion = 20247.268539 eV Total energy + Delta-G solvation = -3345.580595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00024 -38.31134 -37.02064 -35.63738 -34.34744 -32.01231 -31.72534 -29.88648 -28.42650 -26.51565 -25.34752 -23.90680 -22.22616 -21.73791 -21.05865 -19.56784 -18.94861 -17.84722 -17.32071 -16.12328 -15.95307 -15.71620 -15.07544 -14.65053 -14.53330 -13.94392 -13.69409 -13.43153 -13.22150 -13.02866 -12.77250 -12.69687 -12.32557 -11.96470 -11.70909 -11.39038 -11.33152 -11.05291 -10.94456 -10.63982 -10.45058 -10.39470 -10.23992 -10.14440 -9.57903 -9.11728 -9.02207 -8.68857 -8.37144 -8.09492 -7.64014 -7.49281 -5.83650 -3.96435 1.49852 1.78520 3.29671 3.34877 3.43253 3.45527 3.45894 4.20611 4.46944 4.63595 4.91377 4.95262 5.07214 5.15962 5.20874 5.25212 5.46802 5.51280 5.58073 5.75364 5.75779 5.83882 5.93051 6.00702 6.21095 6.33490 6.41429 6.51385 6.64814 6.72322 6.73188 6.81444 6.83796 6.95861 7.02310 7.29334 7.37442 7.43335 7.69384 7.72148 8.11188 8.12596 8.53554 8.93456 9.01851 9.64271 11.07684 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.006594 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.767876 B = 4245.361747 C = 5128.876293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.317 6.317 4 C 0.118 3.882 5 C -0.197 4.197 6 C -0.117 4.117 7 C 0.091 3.909 8 O -0.487 6.487 9 C -0.040 4.040 10 C 0.153 3.847 11 N -0.453 5.453 12 C 0.049 3.951 13 C 0.067 3.933 14 C -0.474 4.474 15 H 0.056 0.944 16 C 0.072 3.928 17 N -0.875 5.875 18 Si 0.894 3.106 19 H -0.283 1.283 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.209 4.209 23 C -0.207 4.207 24 C -0.112 4.112 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.377 0.623 33 H 0.143 0.857 34 H 0.031 0.969 35 H 0.138 0.862 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -9.762 -9.900 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.231 6.231 4 C 0.073 3.927 5 C -0.216 4.216 6 C -0.136 4.136 7 C 0.044 3.956 8 O -0.296 6.296 9 C -0.043 4.043 10 C -0.059 4.059 11 N -0.157 5.157 12 C -0.079 4.079 13 C 0.066 3.934 14 C -0.511 4.511 15 H 0.074 0.926 16 C -0.130 4.130 17 N -0.513 5.513 18 Si 0.722 3.278 19 H -0.210 1.210 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.248 4.248 23 C -0.245 4.245 24 C -0.133 4.133 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.231 0.769 33 H 0.160 0.840 34 H 0.049 0.951 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.778 -8.739 -9.123 13.186 hybrid contribution 0.616 -1.285 0.430 1.488 sum -3.162 -10.024 -8.694 13.640 Atomic orbital electron populations 1.21764 0.93121 1.02436 1.03555 1.22686 0.95582 0.82632 1.01032 1.86085 1.19364 1.28522 1.89148 1.18716 0.81890 0.93895 0.98174 1.20921 0.93725 0.97498 1.09487 1.20988 0.94565 0.96591 1.01442 1.18324 0.82716 0.91213 1.03317 1.84923 1.17016 1.94973 1.32655 1.20007 0.91965 0.95463 0.96852 1.24219 0.97536 0.86011 0.98139 1.71858 1.09165 1.32486 1.02233 1.22803 0.88174 1.05273 0.91658 1.18836 0.91070 0.90050 0.93423 1.20465 1.12133 0.93908 1.24630 0.92581 1.24893 0.96540 0.95895 0.95637 1.69575 1.41308 1.00001 1.40366 0.86554 0.82443 0.77831 0.80969 1.20963 1.21046 1.20047 1.23008 0.97848 1.05767 0.98154 1.22832 1.07593 0.94627 0.99433 1.20696 0.94287 0.95116 1.03158 0.91416 0.91678 0.90729 0.92482 0.92223 0.86055 0.85985 0.76938 0.83958 0.95106 0.84538 0.92880 0.91913 0.90489 0.90937 0.91635 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.66 5.46 37.16 0.20 0.86 16 3 O -0.32 -5.18 10.13 -19.70 -0.20 -5.38 16 4 C 0.12 2.07 6.68 -39.31 -0.26 1.81 16 5 C -0.20 -3.04 9.03 -39.38 -0.36 -3.39 16 6 C -0.12 -1.83 9.97 -39.50 -0.39 -2.22 16 7 C 0.09 1.59 6.72 -38.74 -0.26 1.33 16 8 O -0.49 -7.79 12.88 -19.08 -0.25 -8.04 16 9 C -0.04 -0.77 4.47 -104.92 -0.47 -1.24 16 10 C 0.15 3.15 10.41 -14.84 -0.15 3.00 16 11 N -0.45 -10.70 10.38 -59.09 -0.61 -11.32 16 12 C 0.05 1.19 3.39 -4.05 -0.01 1.18 16 13 C 0.07 1.75 2.13 -155.66 -0.33 1.41 16 14 C -0.47 -13.39 8.85 -34.43 -0.30 -13.69 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.07 2.00 5.38 -17.82 -0.10 1.91 16 17 N -0.87 -23.90 9.10 55.43 0.50 -23.39 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.21 -4.98 9.95 -26.70 -0.27 -5.24 16 23 C -0.21 -4.88 9.95 -26.69 -0.27 -5.14 16 24 C -0.11 -2.19 7.40 -39.02 -0.29 -2.48 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 29 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 30 H 0.12 1.52 6.27 -52.49 -0.33 1.19 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.38 3.74 9.06 45.56 0.41 4.15 16 33 H 0.14 2.53 7.95 -52.49 -0.42 2.11 16 34 H 0.03 0.73 7.09 -51.92 -0.37 0.36 16 35 H 0.14 3.51 2.78 -51.93 -0.14 3.37 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.14 2.80 5.17 -52.49 -0.27 2.53 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -31.85 338.18 -8.19 -40.04 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.84 Total: 8.91 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.88 Total: -22.97 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.11 Total: -34.71 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.45 Total: -13.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.85 -8.19 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797399192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.130 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds