Wall clock time and date at job start Tue Mar 31 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47299 * 2 1 4 4 C 1.35987 * 117.00291 * 179.97438 * 3 2 1 5 5 C 1.38937 * 119.90672 * 359.97438 * 4 3 2 6 6 C 1.38079 * 120.33528 * 179.97438 * 5 4 3 7 7 C 1.38611 * 120.15423 * 0.02562 * 6 5 4 8 8 O 1.35788 * 120.09317 * 179.97438 * 7 6 5 9 9 C 1.40113 * 119.81784 * 359.97438 * 7 6 5 10 10 C 1.47387 * 120.17001 * 180.02562 * 9 7 6 11 11 N 1.29427 * 119.99916 * 209.28639 * 10 9 7 12 12 C 1.46498 * 120.00370 * 9.51189 * 11 10 9 13 13 C 1.52991 * 109.47436 * 139.39835 * 12 11 10 14 14 C 1.50709 * 115.55167 * 300.69432 * 13 12 11 15 15 H 1.07994 * 120.00230 * 145.08293 * 14 13 12 16 16 C 1.37882 * 119.99392 * 325.09018 * 14 13 12 17 17 N 1.31514 * 120.00196 * 2.32497 * 16 14 13 18 18 Si 1.86802 * 119.99601 * 182.32006 * 16 14 13 19 19 H 1.48497 * 109.46885 * 90.00358 * 18 16 14 20 20 H 1.48499 * 109.47096 * 209.99989 * 18 16 14 21 21 H 1.48502 * 109.47311 * 330.00104 * 18 16 14 22 22 C 1.52999 * 117.50177 * 155.02437 * 13 12 11 23 23 C 1.53002 * 117.50308 * 86.36482 * 13 12 11 24 24 C 1.38263 * 119.90873 * 179.72442 * 4 3 2 25 25 H 1.09000 * 109.47661 * 300.00915 * 1 2 3 26 26 H 1.09001 * 109.46609 * 60.00375 * 1 2 3 27 27 H 1.08996 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47522 * 239.99126 * 2 1 3 29 29 H 1.09004 * 109.46665 * 119.98854 * 2 1 3 30 30 H 1.07998 * 119.83359 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.92668 * 179.97438 * 6 5 4 32 32 H 0.96702 * 113.99838 * 84.99411 * 8 7 6 33 33 H 1.07995 * 119.99782 * 29.28729 * 10 9 7 34 34 H 1.09008 * 109.47010 * 259.39956 * 12 11 10 35 35 H 1.09001 * 109.46899 * 19.39360 * 12 11 10 36 36 H 0.97004 * 119.99624 * 180.02562 * 17 16 14 37 37 H 1.08998 * 117.49887 * 0.02562 * 22 13 12 38 38 H 1.09004 * 117.49979 * 145.01927 * 22 13 12 39 39 H 1.09007 * 117.49897 * 214.98144 * 23 13 12 40 40 H 1.08999 * 117.49528 * 359.97438 * 23 13 12 41 41 H 1.08000 * 120.07977 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1991 0.4222 0.0016 6 6 5.5693 0.5929 0.0016 7 6 6.1121 1.8684 0.0011 8 8 7.4597 2.0348 0.0017 9 6 5.2663 2.9854 0.0001 10 6 5.8351 4.3451 -0.0011 11 7 5.1829 5.3199 0.5463 12 6 3.9868 5.0434 1.3457 13 6 3.9813 5.9426 2.5834 14 6 5.1663 5.7910 3.5022 15 1 5.5605 6.6519 4.0216 16 6 5.7472 4.5532 3.6794 17 7 5.2964 3.5135 3.0120 18 14 7.1747 4.3530 4.8676 19 1 6.6521 4.0255 6.2184 20 1 8.0583 3.2553 4.3992 21 1 7.9484 5.6190 4.9296 22 6 2.6272 6.2562 3.2229 23 6 3.3731 7.3391 2.4395 24 6 3.8809 2.8039 -0.0052 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 3.7818 -0.5739 0.0016 31 1 6.2197 -0.2693 0.0029 32 1 7.8599 2.0060 -0.8782 33 1 6.7961 4.5281 -0.4586 34 1 3.0967 5.2419 0.7484 35 1 3.9906 3.9984 1.6557 36 1 5.7049 2.6426 3.1371 37 1 1.7403 5.8215 2.7621 38 1 2.5935 6.3532 4.3081 39 1 3.8299 8.1482 3.0096 40 1 2.9773 7.6174 1.4628 41 1 3.2229 3.6603 -0.0105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797399192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:45 Heat of formation + Delta-G solvation = -15.392112 kcal Electronic energy + Delta-G solvation = -23593.780473 eV Core-core repulsion = 20247.268539 eV Total energy + Delta-G solvation = -3346.511934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27606 -39.57215 -38.75690 -37.06752 -35.85541 -34.08937 -32.65772 -31.25896 -29.77020 -28.19083 -27.40184 -25.03741 -23.53456 -23.09823 -22.84952 -21.20423 -20.61646 -19.16162 -18.77940 -17.75577 -17.21919 -16.98596 -16.69682 -16.33838 -15.98482 -15.62698 -15.17560 -15.05388 -14.74185 -14.21953 -14.17687 -13.80190 -13.61036 -13.35909 -13.11090 -13.01984 -12.93167 -12.64871 -12.42349 -12.35320 -12.14145 -12.11633 -11.61110 -11.43781 -11.41342 -11.00137 -10.81870 -10.63568 -10.17317 -9.80418 -9.28552 -8.80108 -7.87994 -6.08867 0.12858 0.49510 1.38237 1.41841 1.49941 1.80058 2.34255 2.43653 2.86815 3.06913 3.43972 3.60093 3.86003 3.92161 3.99410 4.09661 4.20691 4.25198 4.34648 4.40154 4.44798 4.59272 4.60917 4.80712 4.83300 4.88302 4.92217 4.96640 5.06088 5.11212 5.17708 5.21868 5.37178 5.42863 5.49972 5.51335 5.60411 5.69810 5.88100 6.11345 6.46962 6.53619 6.85839 7.07681 7.30804 7.52082 8.96941 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.006594 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.767876 B = 4245.361747 C = 5128.876293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.339 6.339 4 C 0.107 3.893 5 C -0.185 4.185 6 C -0.114 4.114 7 C 0.091 3.909 8 O -0.500 6.500 9 C -0.065 4.065 10 C 0.164 3.836 11 N -0.496 5.496 12 C 0.063 3.937 13 C 0.033 3.967 14 C -0.499 4.499 15 H 0.039 0.961 16 C 0.038 3.962 17 N -0.873 5.873 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.279 1.279 22 C -0.202 4.202 23 C -0.195 4.195 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.404 0.596 33 H 0.166 0.834 34 H 0.025 0.975 35 H 0.126 0.874 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -12.187 -10.439 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.254 6.254 4 C 0.062 3.938 5 C -0.204 4.204 6 C -0.133 4.133 7 C 0.045 3.955 8 O -0.312 6.312 9 C -0.068 4.068 10 C -0.047 4.047 11 N -0.201 5.201 12 C -0.065 4.065 13 C 0.032 3.968 14 C -0.536 4.536 15 H 0.057 0.943 16 C -0.163 4.163 17 N -0.510 5.510 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.204 1.204 22 C -0.241 4.241 23 C -0.232 4.232 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.262 0.738 33 H 0.183 0.817 34 H 0.043 0.957 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.362 -11.168 -9.686 15.161 hybrid contribution 0.495 -0.638 0.515 0.958 sum -2.867 -11.807 -9.171 15.222 Atomic orbital electron populations 1.21809 0.91660 1.04214 1.02901 1.23070 0.96846 0.80810 1.02272 1.86075 1.18814 1.31486 1.89053 1.18817 0.82870 0.93816 0.98273 1.21301 0.93532 0.98341 1.07221 1.21340 0.95078 0.96802 1.00058 1.18415 0.83107 0.91359 1.02662 1.84842 1.16251 1.94976 1.35178 1.19954 0.92303 0.95409 0.99183 1.24721 0.97532 0.86600 0.95830 1.71848 1.09800 1.33815 1.04615 1.22527 0.88721 1.04108 0.91138 1.19064 0.91336 0.92030 0.94346 1.20552 1.13618 0.93744 1.25713 0.94316 1.25426 0.98311 0.95744 0.96825 1.69759 1.41318 0.99627 1.40288 0.85775 0.80162 0.77384 0.79557 1.20496 1.20872 1.20377 1.22984 0.97489 1.05592 0.98041 1.22806 1.06728 0.93782 0.99929 1.20602 0.94327 0.95544 1.04709 0.92696 0.91737 0.87677 0.90272 0.91710 0.82655 0.82764 0.73825 0.81666 0.95676 0.85668 0.93413 0.90624 0.90813 0.90984 0.90369 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.04 0.95 5.46 71.98 0.39 1.34 16 3 O -0.34 -10.88 10.13 -93.41 -0.95 -11.83 16 4 C 0.11 3.67 6.68 22.44 0.15 3.82 16 5 C -0.18 -5.18 9.03 22.40 0.20 -4.97 16 6 C -0.11 -3.21 9.97 22.32 0.22 -2.99 16 7 C 0.09 3.03 6.72 22.81 0.15 3.18 16 8 O -0.50 -14.78 12.88 -91.18 -1.17 -15.95 16 9 C -0.07 -2.52 4.47 -20.05 -0.09 -2.61 16 10 C 0.16 6.81 10.41 87.46 0.91 7.72 16 11 N -0.50 -23.94 10.38 -340.86 -3.54 -27.48 16 12 C 0.06 3.19 3.39 86.38 0.29 3.48 16 13 C 0.03 1.75 2.13 -52.93 -0.11 1.64 16 14 C -0.50 -28.70 8.85 25.60 0.23 -28.47 16 15 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 16 C 0.04 2.13 5.38 84.66 0.46 2.59 16 17 N -0.87 -47.78 9.10 21.45 0.20 -47.58 16 18 Si 0.94 45.32 29.54 68.60 2.03 47.35 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 22 C -0.20 -9.73 9.95 30.62 0.30 -9.42 16 23 C -0.20 -9.26 9.95 30.62 0.30 -8.96 16 24 C -0.13 -5.19 7.40 22.64 0.17 -5.03 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.33 7.66 -2.39 -0.02 1.31 16 29 H 0.06 1.31 7.65 -2.38 -0.02 1.29 16 30 H 0.16 3.21 6.27 -2.91 -0.02 3.19 16 31 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.40 6.86 9.06 -74.06 -0.67 6.19 16 33 H 0.17 5.78 7.95 -2.91 -0.02 5.76 16 34 H 0.03 1.25 7.09 -2.38 -0.02 1.23 16 35 H 0.13 6.60 2.78 -2.39 -0.01 6.60 16 36 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.07 3.37 8.14 -2.38 -0.02 3.35 16 40 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.11 4.88 5.17 -2.91 -0.02 4.87 16 Total: -1.00 -69.04 338.18 1.26 -67.78 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.38 Total: 28.21 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.32 Total: -40.49 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -3.34 Total: -75.06 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -2.12 Total: -27.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.04 1.26 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797399192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.387 kcal (2) G-P(sol) polarization free energy of solvation -69.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds