Wall clock time and date at job start Tue Mar 31 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47237 * 297.53709 * 3 2 1 5 5 C 1.36942 * 120.00450 * 276.48630 * 4 3 2 6 6 H 1.07999 * 119.99776 * 179.88610 * 5 4 3 7 7 C 1.38811 * 119.99698 * 359.89422 * 5 4 3 8 8 N 1.31617 * 120.00127 * 27.76907 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 207.76274 * 7 5 4 10 10 H 1.48503 * 109.46867 * 90.00114 * 9 7 5 11 11 H 1.48491 * 109.47270 * 210.00307 * 9 7 5 12 12 H 1.48503 * 109.46866 * 330.00404 * 9 7 5 13 13 C 1.46503 * 119.99588 * 96.49051 * 4 3 2 14 14 C 1.53005 * 109.47063 * 269.99610 * 13 4 3 15 15 O 1.42898 * 109.46839 * 65.00239 * 14 13 4 16 16 C 1.42899 * 114.00011 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47119 * 180.02562 * 16 15 14 18 18 C 1.38271 * 119.94144 * 269.72624 * 17 16 15 19 19 C 1.38146 * 120.05326 * 179.72407 * 18 17 16 20 20 C 1.38732 * 119.94553 * 0.57452 * 19 18 17 21 21 O 1.35896 * 120.05499 * 179.68159 * 20 19 18 22 22 C 1.42897 * 117.00420 * 0.02562 * 21 20 19 23 23 C 1.38731 * 119.88717 * 359.69741 * 20 19 18 24 24 C 1.38150 * 119.94230 * 0.02562 * 23 20 19 25 25 H 4.40634 * 5.51421 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46884 * 177.54175 * 3 2 1 27 27 H 1.09001 * 109.47217 * 57.54318 * 3 2 1 28 28 H 0.96999 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47158 * 150.00111 * 13 4 3 30 30 H 1.08995 * 109.47615 * 29.99809 * 13 4 3 31 31 H 1.09001 * 109.47157 * 305.00307 * 14 13 4 32 32 H 1.08992 * 109.47244 * 185.00063 * 14 13 4 33 33 H 1.08996 * 109.47145 * 300.00239 * 16 15 14 34 34 H 1.09006 * 109.47260 * 60.00097 * 16 15 14 35 35 H 1.08001 * 119.97145 * 359.97438 * 18 17 16 36 36 H 1.08008 * 120.02752 * 180.24866 * 19 18 17 37 37 H 1.08998 * 109.46819 * 59.99715 * 22 21 20 38 38 H 1.08994 * 109.47275 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47029 * 300.00094 * 22 21 20 40 40 H 1.07998 * 120.02940 * 179.97438 * 23 20 19 41 41 H 1.08007 * 119.97137 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6377 1.2247 5 6 3.2363 0.0881 2.3815 6 1 3.5948 -0.3831 3.2848 7 6 2.8784 1.4292 2.3932 8 7 1.9744 1.8764 1.5476 9 14 3.6796 2.5992 3.6091 10 1 4.9002 3.1864 3.0002 11 1 2.7266 3.6848 3.9530 12 1 4.0492 1.8564 4.8408 13 6 3.5147 -2.0525 1.2118 14 6 2.2958 -2.9111 1.5556 15 8 1.3119 -2.7745 0.5284 16 6 0.1267 -3.5405 0.7532 17 6 -0.8359 -3.3226 -0.3857 18 6 -1.7663 -2.3020 -0.3172 19 6 -2.6460 -2.0966 -1.3624 20 6 -2.6033 -2.9226 -2.4761 21 8 -3.4719 -2.7266 -3.5027 22 6 -4.4024 -1.6504 -3.3687 23 6 -1.6725 -3.9494 -2.5399 24 6 -0.7911 -4.1471 -1.4946 25 1 -1.0498 0.0001 0.0003 26 1 3.0088 1.0276 -0.0441 27 1 3.0096 -0.5507 -0.8671 28 1 1.7240 2.8135 1.5559 29 1 4.2996 -2.2246 1.9481 30 1 3.8806 -2.3214 0.2210 31 1 1.8764 -2.5824 2.5065 32 1 2.5974 -3.9556 1.6333 33 1 0.3836 -4.5980 0.8139 34 1 -0.3379 -3.2253 1.6875 35 1 -1.8026 -1.6625 0.5523 36 1 -3.3700 -1.2968 -1.3101 37 1 -3.8591 -0.7116 -3.2613 38 1 -5.0355 -1.6051 -4.2547 39 1 -5.0227 -1.8141 -2.4874 40 1 -1.6374 -4.5941 -3.4057 41 1 -0.0666 -4.9466 -1.5436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:36 Heat of formation + Delta-G solvation = 39.828041 kcal Electronic energy + Delta-G solvation = -23071.480827 eV Core-core repulsion = 19727.363418 eV Total energy + Delta-G solvation = -3344.117409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02664 -38.01144 -36.90127 -35.52070 -31.86047 -31.31036 -30.82576 -30.62679 -28.18647 -27.48525 -25.84464 -24.93156 -23.15602 -22.50252 -21.03724 -20.44181 -18.18994 -17.36907 -16.38755 -16.25026 -15.77938 -15.69881 -15.51546 -15.13834 -14.59777 -14.32850 -13.76376 -13.50483 -13.38527 -13.08570 -12.99222 -12.63893 -12.39018 -11.96638 -11.68758 -11.51430 -11.20102 -11.07862 -11.03300 -10.83116 -10.69654 -10.60063 -10.28850 -10.17779 -9.81491 -8.94053 -8.80892 -8.59629 -8.53694 -8.05552 -7.93079 -7.01349 -5.72010 -3.01897 1.50600 1.57103 3.28214 3.41901 3.49810 3.50745 3.81228 4.42054 4.62687 4.68079 4.87173 4.90219 4.99208 5.06949 5.10125 5.27625 5.36981 5.38442 5.44408 5.53317 5.61128 5.66316 5.84036 5.87031 6.05335 6.11210 6.16858 6.20870 6.31481 6.40548 6.51075 6.53751 6.74974 6.87069 6.88300 6.90684 7.45122 7.53812 7.67630 7.83358 7.92810 8.31619 9.20680 9.62211 9.88293 10.32708 11.30019 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.004354 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.526103 B = 6428.744964 C = 7289.207981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.057 4.057 3 C 0.272 3.728 4 N -0.587 5.587 5 C -0.263 4.263 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.881 5.881 9 Si 0.890 3.110 10 H -0.288 1.288 11 H -0.295 1.295 12 H -0.282 1.282 13 C 0.153 3.847 14 C 0.037 3.963 15 O -0.355 6.355 16 C 0.108 3.892 17 C -0.111 4.111 18 C -0.042 4.042 19 C -0.211 4.211 20 C 0.125 3.875 21 O -0.322 6.322 22 C 0.028 3.972 23 C -0.160 4.160 24 C -0.063 4.063 25 H 0.179 0.821 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.252 0.748 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.126 0.874 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 -10.632 -6.740 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 C -0.060 4.060 3 C 0.147 3.853 4 N -0.307 5.307 5 C -0.392 4.392 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.525 5.525 9 Si 0.720 3.280 10 H -0.215 1.215 11 H -0.222 1.222 12 H -0.208 1.208 13 C 0.025 3.975 14 C -0.042 4.042 15 O -0.274 6.274 16 C 0.031 3.969 17 C -0.112 4.112 18 C -0.060 4.060 19 C -0.230 4.230 20 C 0.080 3.920 21 O -0.235 6.235 22 C -0.067 4.067 23 C -0.179 4.179 24 C -0.081 4.081 25 H 0.196 0.804 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.144 0.856 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.244 -10.433 -7.079 15.064 hybrid contribution -0.308 0.836 1.271 1.552 sum -8.552 -9.598 -5.808 14.106 Atomic orbital electron populations 1.23772 0.94818 1.08397 1.06748 1.23762 0.94713 0.93189 0.94371 1.17976 0.83538 0.97879 0.85884 1.44236 1.73883 1.04838 1.07789 1.19215 1.38724 0.91453 0.89780 0.90522 1.24741 0.98125 0.97776 0.98713 1.70250 1.28121 1.14440 1.39696 0.86461 0.79522 0.81298 0.80713 1.21549 1.22181 1.20772 1.20918 0.92742 0.84290 0.99557 1.23487 0.91888 0.97396 0.91477 1.88122 1.25671 1.67986 1.45575 1.21086 0.86482 0.94328 0.94960 1.19510 0.97519 0.97473 0.96664 1.20960 0.92404 0.94647 0.97957 1.21170 1.04052 1.02448 0.95300 1.19011 0.90758 0.95135 0.87123 1.86025 1.45402 1.51248 1.40863 1.23023 0.91629 0.89123 1.02968 1.20293 0.97456 0.99487 1.00661 1.20803 0.96733 0.98639 0.91947 0.80359 0.89132 0.94943 0.93697 0.91693 0.93294 0.93723 0.95566 0.93922 0.93462 0.85289 0.85676 0.92459 0.88543 0.92791 0.85581 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -7.55 16.99 29.55 0.50 -7.05 16 2 C -0.06 -1.45 9.53 -37.12 -0.35 -1.80 16 3 C 0.27 6.75 5.40 -6.83 -0.04 6.71 16 4 N -0.59 -14.42 2.47 -176.57 -0.44 -14.85 16 5 C -0.26 -7.06 9.65 -15.06 -0.15 -7.20 16 6 H 0.08 2.01 7.97 -52.49 -0.42 1.59 16 7 C 0.01 0.14 4.97 -17.43 -0.09 0.05 16 8 N -0.88 -25.14 8.92 55.49 0.49 -24.64 16 9 Si 0.89 21.52 29.63 -169.99 -5.04 16.48 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.15 3.05 6.11 -4.04 -0.02 3.02 16 14 C 0.04 0.69 6.28 37.16 0.23 0.93 16 15 O -0.35 -6.98 8.04 -35.23 -0.28 -7.27 16 16 C 0.11 1.77 6.06 36.01 0.22 1.99 16 17 C -0.11 -1.76 5.51 -104.60 -0.58 -2.34 16 18 C -0.04 -0.65 7.28 -39.60 -0.29 -0.94 16 19 C -0.21 -3.00 9.04 -39.43 -0.36 -3.36 16 20 C 0.12 1.77 6.69 -39.22 -0.26 1.51 16 21 O -0.32 -4.18 10.50 -19.41 -0.20 -4.39 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 C -0.16 -2.21 9.99 -39.43 -0.39 -2.60 16 24 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 16 25 H 0.18 3.71 5.97 -54.10 -0.32 3.39 16 26 H 0.09 2.44 6.25 -51.93 -0.32 2.12 16 27 H 0.03 0.74 7.82 -51.93 -0.41 0.33 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 30 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.13 2.09 6.57 -52.49 -0.35 1.75 16 36 H 0.13 1.52 6.30 -52.48 -0.33 1.19 16 37 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -31.28 341.02 -7.15 -38.42 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.86 Total: 2.22 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.96 Total: -11.11 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.06 Total: -39.49 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.49 Total: -11.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.28 -7.15 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.251 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds