Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47237 * 297.53709 * 3 2 1 5 5 C 1.36942 * 120.00450 * 276.48630 * 4 3 2 6 6 H 1.07999 * 119.99776 * 179.88610 * 5 4 3 7 7 C 1.38811 * 119.99698 * 359.89422 * 5 4 3 8 8 N 1.31617 * 120.00127 * 27.76907 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 207.76274 * 7 5 4 10 10 H 1.48503 * 109.46867 * 90.00114 * 9 7 5 11 11 H 1.48491 * 109.47270 * 210.00307 * 9 7 5 12 12 H 1.48503 * 109.46866 * 330.00404 * 9 7 5 13 13 C 1.46503 * 119.99588 * 96.49051 * 4 3 2 14 14 C 1.53005 * 109.47063 * 269.99610 * 13 4 3 15 15 O 1.42898 * 109.46839 * 65.00239 * 14 13 4 16 16 C 1.42899 * 114.00011 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47119 * 180.02562 * 16 15 14 18 18 C 1.38271 * 119.94144 * 269.72624 * 17 16 15 19 19 C 1.38146 * 120.05326 * 179.72407 * 18 17 16 20 20 C 1.38732 * 119.94553 * 0.57452 * 19 18 17 21 21 O 1.35896 * 120.05499 * 179.68159 * 20 19 18 22 22 C 1.42897 * 117.00420 * 0.02562 * 21 20 19 23 23 C 1.38731 * 119.88717 * 359.69741 * 20 19 18 24 24 C 1.38150 * 119.94230 * 0.02562 * 23 20 19 25 25 H 4.40634 * 5.51421 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46884 * 177.54175 * 3 2 1 27 27 H 1.09001 * 109.47217 * 57.54318 * 3 2 1 28 28 H 0.96999 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47158 * 150.00111 * 13 4 3 30 30 H 1.08995 * 109.47615 * 29.99809 * 13 4 3 31 31 H 1.09001 * 109.47157 * 305.00307 * 14 13 4 32 32 H 1.08992 * 109.47244 * 185.00063 * 14 13 4 33 33 H 1.08996 * 109.47145 * 300.00239 * 16 15 14 34 34 H 1.09006 * 109.47260 * 60.00097 * 16 15 14 35 35 H 1.08001 * 119.97145 * 359.97438 * 18 17 16 36 36 H 1.08008 * 120.02752 * 180.24866 * 19 18 17 37 37 H 1.08998 * 109.46819 * 59.99715 * 22 21 20 38 38 H 1.08994 * 109.47275 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47029 * 300.00094 * 22 21 20 40 40 H 1.07998 * 120.02940 * 179.97438 * 23 20 19 41 41 H 1.08007 * 119.97137 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6377 1.2247 5 6 3.2363 0.0881 2.3815 6 1 3.5948 -0.3831 3.2848 7 6 2.8784 1.4292 2.3932 8 7 1.9744 1.8764 1.5476 9 14 3.6796 2.5992 3.6091 10 1 4.9002 3.1864 3.0002 11 1 2.7266 3.6848 3.9530 12 1 4.0492 1.8564 4.8408 13 6 3.5147 -2.0525 1.2118 14 6 2.2958 -2.9111 1.5556 15 8 1.3119 -2.7745 0.5284 16 6 0.1267 -3.5405 0.7532 17 6 -0.8359 -3.3226 -0.3857 18 6 -1.7663 -2.3020 -0.3172 19 6 -2.6460 -2.0966 -1.3624 20 6 -2.6033 -2.9226 -2.4761 21 8 -3.4719 -2.7266 -3.5027 22 6 -4.4024 -1.6504 -3.3687 23 6 -1.6725 -3.9494 -2.5399 24 6 -0.7911 -4.1471 -1.4946 25 1 -1.0498 0.0001 0.0003 26 1 3.0088 1.0276 -0.0441 27 1 3.0096 -0.5507 -0.8671 28 1 1.7240 2.8135 1.5559 29 1 4.2996 -2.2246 1.9481 30 1 3.8806 -2.3214 0.2210 31 1 1.8764 -2.5824 2.5065 32 1 2.5974 -3.9556 1.6333 33 1 0.3836 -4.5980 0.8139 34 1 -0.3379 -3.2253 1.6875 35 1 -1.8026 -1.6625 0.5523 36 1 -3.3700 -1.2968 -1.3101 37 1 -3.8591 -0.7116 -3.2613 38 1 -5.0355 -1.6051 -4.2547 39 1 -5.0227 -1.8141 -2.4874 40 1 -1.6374 -4.5941 -3.4057 41 1 -0.0666 -4.9466 -1.5436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = 22.768508 kcal Electronic energy + Delta-G solvation = -23072.220584 eV Core-core repulsion = 19727.363418 eV Total energy + Delta-G solvation = -3344.857166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05871 -39.27291 -38.25381 -37.20741 -33.55588 -33.15474 -32.05931 -31.91138 -29.77260 -28.41800 -27.80564 -26.13625 -24.91486 -23.58231 -22.30607 -22.00332 -19.49083 -19.00573 -18.11148 -17.36770 -17.28490 -16.99362 -16.63038 -16.55161 -16.17007 -15.52805 -15.40229 -15.16241 -14.75832 -14.45410 -14.25841 -14.02074 -13.54592 -13.36974 -13.32143 -12.88851 -12.76736 -12.64816 -12.55055 -12.35178 -12.17001 -11.98210 -11.78349 -11.68050 -11.66744 -10.64248 -10.45504 -10.29304 -10.01875 -9.81864 -9.11471 -8.93234 -7.77584 -5.07199 0.40466 0.45300 1.49161 1.53066 1.59050 2.38696 2.49291 2.65702 2.74323 2.98051 3.28217 3.36369 3.84060 3.91758 3.95954 4.08307 4.23057 4.29732 4.38206 4.39197 4.43356 4.51932 4.57864 4.65155 4.66621 4.72704 4.75917 4.78897 4.99561 5.00773 5.11761 5.22918 5.31434 5.41288 5.53769 5.69914 5.74220 5.82153 5.86120 6.30509 6.45231 6.55475 7.17303 7.71150 7.93278 8.34524 9.22939 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.004354 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.526103 B = 6428.744964 C = 7289.207981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.087 4.087 3 C 0.277 3.723 4 N -0.600 5.600 5 C -0.266 4.266 6 H 0.080 0.920 7 C -0.045 4.045 8 N -0.907 5.907 9 Si 0.951 3.049 10 H -0.288 1.288 11 H -0.305 1.305 12 H -0.273 1.273 13 C 0.146 3.854 14 C 0.045 3.955 15 O -0.379 6.379 16 C 0.108 3.892 17 C -0.131 4.131 18 C -0.057 4.057 19 C -0.215 4.215 20 C 0.119 3.881 21 O -0.332 6.332 22 C 0.018 3.982 23 C -0.165 4.165 24 C -0.063 4.063 25 H 0.201 0.799 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.244 0.756 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.056 0.944 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.146 0.854 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -12.010 -7.247 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.090 4.090 3 C 0.152 3.848 4 N -0.321 5.321 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.241 4.241 8 N -0.553 5.553 9 Si 0.781 3.219 10 H -0.216 1.216 11 H -0.233 1.233 12 H -0.198 1.198 13 C 0.020 3.980 14 C -0.034 4.034 15 O -0.298 6.298 16 C 0.032 3.968 17 C -0.131 4.131 18 C -0.075 4.075 19 C -0.234 4.234 20 C 0.074 3.926 21 O -0.246 6.246 22 C -0.076 4.076 23 C -0.184 4.184 24 C -0.080 4.080 25 H 0.218 0.782 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.083 0.917 40 H 0.164 0.836 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.409 -11.846 -7.579 16.386 hybrid contribution -0.331 1.192 1.366 1.843 sum -8.740 -10.654 -6.214 15.117 Atomic orbital electron populations 1.24319 0.95505 1.07252 1.05773 1.24053 0.95358 0.94270 0.95349 1.17797 0.83602 0.96699 0.86735 1.44397 1.73989 1.06758 1.06911 1.19507 1.37501 0.91907 0.90585 0.90255 1.25363 0.98822 0.99089 1.00788 1.70408 1.29455 1.13825 1.41598 0.85507 0.78095 0.79140 0.79204 1.21561 1.23265 1.19822 1.21163 0.93684 0.82162 1.00996 1.23295 0.91043 0.99067 0.90032 1.88083 1.26744 1.69203 1.45765 1.21196 0.85520 0.95329 0.94803 1.19605 0.97783 0.98346 0.97356 1.20944 0.93441 0.95043 0.98113 1.21329 1.04097 1.02994 0.94982 1.19201 0.91030 0.95087 0.87283 1.86019 1.45656 1.52453 1.40440 1.23314 0.91344 0.88040 1.04884 1.20602 0.97030 0.99577 1.01167 1.21030 0.97041 0.98701 0.91278 0.78222 0.91956 0.93314 0.94662 0.90222 0.91767 0.96311 0.91748 0.91240 0.94632 0.86645 0.84112 0.92571 0.85934 0.91743 0.83636 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.73 16.99 74.32 1.26 -13.47 16 2 C -0.09 -4.45 9.53 31.13 0.30 -4.15 16 3 C 0.28 13.84 5.40 84.58 0.46 14.30 16 4 N -0.60 -29.27 2.47 -712.55 -1.76 -31.03 16 5 C -0.27 -14.21 9.65 84.03 0.81 -13.40 16 6 H 0.08 4.11 7.97 -2.91 -0.02 4.09 16 7 C -0.04 -2.46 4.97 84.86 0.42 -2.04 16 8 N -0.91 -52.68 8.92 21.65 0.19 -52.49 16 9 Si 0.95 44.75 29.63 68.60 2.03 46.79 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.15 5.61 6.11 86.38 0.53 6.14 16 14 C 0.04 1.60 6.28 71.98 0.45 2.06 16 15 O -0.38 -14.47 8.04 -148.98 -1.20 -15.67 16 16 C 0.11 3.41 6.06 71.24 0.43 3.84 16 17 C -0.13 -4.01 5.51 -19.85 -0.11 -4.12 16 18 C -0.06 -1.78 7.28 22.26 0.16 -1.62 16 19 C -0.22 -5.93 9.04 22.37 0.20 -5.73 16 20 C 0.12 3.21 6.69 22.51 0.15 3.36 16 21 O -0.33 -8.01 10.50 -92.38 -0.97 -8.98 16 22 C 0.02 0.30 9.81 113.37 1.11 1.42 16 23 C -0.17 -4.24 9.99 22.37 0.22 -4.01 16 24 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 25 H 0.20 8.28 5.97 -4.43 -0.03 8.25 16 26 H 0.06 3.45 6.25 -2.39 -0.01 3.44 16 27 H 0.05 2.21 7.82 -2.39 -0.02 2.19 16 28 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.08 2.79 8.04 -2.39 -0.02 2.77 16 30 H 0.06 2.26 7.85 -2.39 -0.02 2.25 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 34 H 0.04 1.18 8.08 -2.38 -0.02 1.16 16 35 H 0.12 3.81 6.57 -2.91 -0.02 3.79 16 36 H 0.14 3.26 6.30 -2.91 -0.02 3.25 16 37 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 40 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -66.52 341.02 5.92 -60.59 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.01 Total: 19.65 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 6.62 Total: -18.86 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.57 Total: -83.52 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -2.17 Total: -24.65 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.52 5.92 -60.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.362 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds