Wall clock time and date at job start Tue Mar 31 2020 06:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99663 * 2 1 4 4 C 1.38747 * 119.98072 * 359.72715 * 3 2 1 5 5 C 1.37995 * 119.84399 * 180.36586 * 4 3 2 6 6 C 1.39024 * 120.11361 * 359.97438 * 5 4 3 7 7 C 1.38565 * 120.12799 * 359.86369 * 6 5 4 8 8 C 1.38495 * 119.60992 * 0.19016 * 7 6 5 9 9 C 1.50595 * 121.50196 * 180.33628 * 7 6 5 10 10 C 1.52841 * 110.52376 * 339.30209 * 9 7 6 11 11 C 1.53429 * 108.86680 * 51.44684 * 10 9 7 12 12 N 1.40382 * 119.08151 * 179.75307 * 6 5 4 13 13 C 1.34774 * 120.56298 * 346.63993 * 12 6 5 14 14 O 1.21295 * 119.99829 * 353.92695 * 13 12 6 15 15 C 1.50697 * 120.00128 * 173.91874 * 13 12 6 16 16 C 1.52997 * 109.47447 * 185.45480 * 15 13 12 17 17 C 1.50701 * 109.47191 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00207 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99925 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47015 * 90.00408 * 21 19 17 23 23 H 1.48504 * 109.46872 * 210.00525 * 21 19 17 24 24 H 1.48504 * 109.46985 * 330.00214 * 21 19 17 25 25 H 1.08998 * 109.47699 * 60.00320 * 1 2 3 26 26 H 1.09006 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47521 * 299.99678 * 1 2 3 28 28 H 1.07997 * 120.07866 * 0.34376 * 4 3 2 29 29 H 1.08004 * 119.94720 * 180.02562 * 5 4 3 30 30 H 1.07993 * 119.86430 * 179.91634 * 8 7 6 31 31 H 1.09002 * 109.26471 * 99.56967 * 9 7 6 32 32 H 1.09001 * 109.26722 * 219.06866 * 9 7 6 33 33 H 1.09003 * 109.57074 * 171.26045 * 10 9 7 34 34 H 1.09002 * 109.57545 * 291.51041 * 10 9 7 35 35 H 1.09002 * 109.79661 * 56.31382 * 11 10 9 36 36 H 1.09003 * 109.80200 * 177.10793 * 11 10 9 37 37 H 1.09004 * 109.47465 * 305.45663 * 15 13 12 38 38 H 1.09009 * 109.47004 * 65.45330 * 15 13 12 39 39 H 1.09004 * 109.46937 * 300.00506 * 16 15 13 40 40 H 1.08995 * 109.47124 * 59.99900 * 16 15 13 41 41 H 0.96998 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2901 2.3749 -0.0057 5 6 1.9194 3.6030 -0.0134 6 6 3.3078 3.6752 -0.0148 7 6 4.0647 2.5146 -0.0057 8 6 3.4298 1.2837 0.0008 9 6 5.5700 2.5568 0.0006 10 6 6.0703 3.9078 -0.5099 11 6 5.3620 5.0251 0.2672 12 7 3.9254 4.9358 -0.0279 13 6 3.2129 6.0452 -0.3069 14 8 2.0554 5.9504 -0.6570 15 6 3.8541 7.4034 -0.1840 16 6 2.8015 8.4879 -0.4224 17 6 3.4430 9.8460 -0.3001 18 1 4.4960 9.9276 -0.0743 19 6 2.6853 10.9846 -0.4753 20 7 3.2449 12.1699 -0.3680 21 14 0.8638 10.8435 -0.8650 22 1 0.0872 10.8212 0.4004 23 1 0.4414 12.0076 -1.6846 24 1 0.6150 9.5897 -1.6208 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2115 2.3195 -0.0046 29 1 1.3325 4.5096 -0.0174 30 1 4.0157 0.3765 0.0066 31 1 5.9299 2.4010 1.0177 32 1 5.9547 1.7651 -0.6422 33 1 7.1468 3.9809 -0.3547 34 1 5.8474 4.0019 -1.5727 35 1 5.5281 4.8937 1.3364 36 1 5.7452 5.9952 -0.0493 37 1 4.2738 7.5180 0.8155 38 1 4.6482 7.4987 -0.9246 39 1 2.3818 8.3733 -1.4219 40 1 2.0075 8.3926 0.3181 41 1 2.7119 12.9708 -0.4916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812534035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:29 Heat of formation + Delta-G solvation = -45.290459 kcal Electronic energy + Delta-G solvation = -22775.197009 eV Core-core repulsion = 19427.388585 eV Total energy + Delta-G solvation = -3347.808424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06158 -39.55034 -37.89340 -35.83336 -33.69112 -33.45687 -31.51016 -30.39824 -29.79178 -27.41037 -26.33651 -25.41875 -23.16981 -22.97244 -21.31983 -20.13620 -18.90316 -17.73258 -17.41480 -17.03435 -16.48430 -15.86807 -15.63016 -15.39762 -14.82944 -14.54046 -14.16038 -13.87255 -13.65060 -13.44489 -13.31732 -13.10094 -12.88949 -12.60347 -12.44652 -12.32916 -11.79958 -11.51370 -11.41919 -11.21557 -11.06166 -10.98053 -10.85174 -10.19649 -10.07342 -9.81612 -9.64150 -9.24157 -9.05876 -8.76904 -8.54884 -7.46565 -6.06860 -4.06134 1.26578 1.44000 2.88569 2.94799 3.20453 3.34778 3.41807 3.51866 3.78597 4.47196 4.49494 4.62287 4.75399 4.82497 4.88036 4.98965 5.00547 5.09676 5.13861 5.27966 5.28517 5.32075 5.40833 5.45036 5.62739 5.67974 5.73897 5.84225 5.95318 5.96640 5.98304 6.11791 6.34920 6.46433 6.51820 6.60063 6.98073 7.27580 7.36232 7.38800 7.47356 7.73815 8.36209 8.48827 8.95398 9.55829 11.05868 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.003934 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.162183 B = 7116.570392 C = 8371.651050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.097 3.903 4 C -0.187 4.187 5 C -0.113 4.113 6 C 0.131 3.869 7 C -0.085 4.085 8 C -0.134 4.134 9 C -0.075 4.075 10 C -0.136 4.136 11 C 0.101 3.899 12 N -0.561 5.561 13 C 0.512 3.488 14 O -0.518 6.518 15 C -0.119 4.119 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.018 0.982 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -23.831 1.790 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.052 3.948 4 C -0.206 4.206 5 C -0.133 4.133 6 C 0.037 3.963 7 C -0.088 4.088 8 C -0.153 4.153 9 C -0.112 4.112 10 C -0.174 4.174 11 C -0.021 4.021 12 N -0.286 5.286 13 C 0.304 3.696 14 O -0.394 6.394 15 C -0.159 4.159 16 C -0.037 4.037 17 C -0.564 4.564 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.188 0.812 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.959 -23.765 1.581 23.898 hybrid contribution -1.172 0.112 -0.148 1.186 sum 0.787 -23.653 1.434 23.710 Atomic orbital electron populations 1.23002 0.78727 1.03517 1.01409 1.86025 1.21087 1.27115 1.89408 1.18897 0.92233 0.84065 0.99631 1.21207 0.99950 0.91864 1.07599 1.22095 0.93448 0.99802 0.97953 1.17698 0.91746 0.84491 1.02368 1.19225 0.95409 0.90840 1.03305 1.19997 0.91194 0.97207 1.06869 1.20392 0.90551 0.98133 1.02173 1.21880 1.00478 0.94136 1.00880 1.22004 0.78788 1.00979 1.00373 1.45985 1.10163 1.04928 1.67517 1.21787 0.86560 0.86349 0.74856 1.90448 1.17752 1.86293 1.44865 1.21746 1.01404 0.89300 1.03436 1.19398 0.93781 0.92800 0.97704 1.21071 0.97643 0.88584 1.49084 0.90868 1.24963 0.98533 0.95197 0.94458 1.69902 1.36475 0.97544 1.50170 0.86810 0.85711 0.78086 0.79051 1.20224 1.21377 1.18511 0.92750 0.88541 0.92770 0.85453 0.81170 0.85280 0.90297 0.90195 0.89564 0.90816 0.90621 0.88118 0.89312 0.89093 0.95564 0.96321 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.84 10.50 -19.66 -0.21 -4.04 16 3 C 0.10 1.28 6.68 -39.28 -0.26 1.01 16 4 C -0.19 -2.58 9.03 -39.48 -0.36 -2.93 16 5 C -0.11 -1.82 8.87 -39.38 -0.35 -2.17 16 6 C 0.13 1.99 6.32 -83.53 -0.53 1.47 16 7 C -0.08 -1.07 5.76 -104.46 -0.60 -1.67 16 8 C -0.13 -1.65 9.60 -39.37 -0.38 -2.02 16 9 C -0.08 -0.69 5.77 -28.02 -0.16 -0.85 16 10 C -0.14 -1.21 6.11 -26.59 -0.16 -1.38 16 11 C 0.10 1.10 6.17 -3.59 -0.02 1.08 16 12 N -0.56 -8.46 2.98 -112.80 -0.34 -8.79 16 13 C 0.51 9.41 7.55 -10.99 -0.08 9.32 16 14 O -0.52 -11.06 12.66 5.54 0.07 -10.99 16 15 C -0.12 -2.25 4.06 -27.89 -0.11 -2.36 16 16 C 0.00 0.03 3.35 -27.88 -0.09 -0.07 16 17 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 21 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 25 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 28 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 29 H 0.17 3.11 4.97 -53.64 -0.27 2.84 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.62 8.12 -51.93 -0.42 0.19 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.03 6.27 -51.93 -0.33 0.70 16 37 H 0.09 1.53 8.06 -51.93 -0.42 1.11 16 38 H 0.09 1.57 7.60 -51.92 -0.39 1.18 16 39 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 40 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -33.76 328.88 -7.80 -41.56 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.84 Total: -0.95 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.55 Total: -12.47 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.44 Total: -35.66 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.14 Total: -15.03 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.76 -7.80 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.728 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds