Wall clock time and date at job start Tue Mar 31 2020 06:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35974 * 116.99663 * 2 1 4 4 C 1.38747 * 119.98072 * 359.72715 * 3 2 1 5 5 C 1.37995 * 119.84399 * 180.36586 * 4 3 2 6 6 C 1.39024 * 120.11361 * 359.97438 * 5 4 3 7 7 C 1.38565 * 120.12799 * 359.86369 * 6 5 4 8 8 C 1.38495 * 119.60992 * 0.19016 * 7 6 5 9 9 C 1.50595 * 121.50196 * 180.33628 * 7 6 5 10 10 C 1.52841 * 110.52376 * 339.30209 * 9 7 6 11 11 C 1.53429 * 108.86680 * 51.44684 * 10 9 7 12 12 N 1.40382 * 119.08151 * 179.75307 * 6 5 4 13 13 C 1.34774 * 120.56298 * 346.63993 * 12 6 5 14 14 O 1.21295 * 119.99829 * 353.92695 * 13 12 6 15 15 C 1.50697 * 120.00128 * 173.91874 * 13 12 6 16 16 C 1.52997 * 109.47447 * 185.45480 * 15 13 12 17 17 C 1.50701 * 109.47191 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00207 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99925 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47015 * 90.00408 * 21 19 17 23 23 H 1.48504 * 109.46872 * 210.00525 * 21 19 17 24 24 H 1.48504 * 109.46985 * 330.00214 * 21 19 17 25 25 H 1.08998 * 109.47699 * 60.00320 * 1 2 3 26 26 H 1.09006 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47521 * 299.99678 * 1 2 3 28 28 H 1.07997 * 120.07866 * 0.34376 * 4 3 2 29 29 H 1.08004 * 119.94720 * 180.02562 * 5 4 3 30 30 H 1.07993 * 119.86430 * 179.91634 * 8 7 6 31 31 H 1.09002 * 109.26471 * 99.56967 * 9 7 6 32 32 H 1.09001 * 109.26722 * 219.06866 * 9 7 6 33 33 H 1.09003 * 109.57074 * 171.26045 * 10 9 7 34 34 H 1.09002 * 109.57545 * 291.51041 * 10 9 7 35 35 H 1.09002 * 109.79661 * 56.31382 * 11 10 9 36 36 H 1.09003 * 109.80200 * 177.10793 * 11 10 9 37 37 H 1.09004 * 109.47465 * 305.45663 * 15 13 12 38 38 H 1.09009 * 109.47004 * 65.45330 * 15 13 12 39 39 H 1.09004 * 109.46937 * 300.00506 * 16 15 13 40 40 H 1.08995 * 109.47124 * 59.99900 * 16 15 13 41 41 H 0.96998 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2901 2.3749 -0.0057 5 6 1.9194 3.6030 -0.0134 6 6 3.3078 3.6752 -0.0148 7 6 4.0647 2.5146 -0.0057 8 6 3.4298 1.2837 0.0008 9 6 5.5700 2.5568 0.0006 10 6 6.0703 3.9078 -0.5099 11 6 5.3620 5.0251 0.2672 12 7 3.9254 4.9358 -0.0279 13 6 3.2129 6.0452 -0.3069 14 8 2.0554 5.9504 -0.6570 15 6 3.8541 7.4034 -0.1840 16 6 2.8015 8.4879 -0.4224 17 6 3.4430 9.8460 -0.3001 18 1 4.4960 9.9276 -0.0743 19 6 2.6853 10.9846 -0.4753 20 7 3.2449 12.1699 -0.3680 21 14 0.8638 10.8435 -0.8650 22 1 0.0872 10.8212 0.4004 23 1 0.4414 12.0076 -1.6846 24 1 0.6150 9.5897 -1.6208 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2115 2.3195 -0.0046 29 1 1.3325 4.5096 -0.0174 30 1 4.0157 0.3765 0.0066 31 1 5.9299 2.4010 1.0177 32 1 5.9547 1.7651 -0.6422 33 1 7.1468 3.9809 -0.3547 34 1 5.8474 4.0019 -1.5727 35 1 5.5281 4.8937 1.3364 36 1 5.7452 5.9952 -0.0493 37 1 4.2738 7.5180 0.8155 38 1 4.6482 7.4987 -0.9246 39 1 2.3818 8.3733 -1.4219 40 1 2.0075 8.3926 0.3181 41 1 2.7119 12.9708 -0.4916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812534035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:29 Heat of formation + Delta-G solvation = -66.064141 kcal Electronic energy + Delta-G solvation = -22776.097823 eV Core-core repulsion = 19427.388585 eV Total energy + Delta-G solvation = -3348.709238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17900 -40.60118 -39.01090 -36.83311 -35.62360 -34.52939 -33.43010 -31.36260 -30.87255 -28.55883 -27.61837 -26.54398 -24.36707 -23.93842 -22.91493 -21.30944 -20.09733 -19.17957 -18.63138 -18.22979 -17.92192 -16.98491 -16.62369 -16.55027 -16.19169 -15.83638 -15.45859 -15.10097 -14.83763 -14.68454 -14.61685 -14.23949 -14.15206 -13.86961 -13.60914 -13.40169 -13.21273 -12.93798 -12.63920 -12.24734 -12.18946 -12.03052 -11.93312 -11.82924 -11.77244 -11.75448 -11.39523 -10.79363 -10.73646 -10.37676 -9.77088 -8.53903 -8.32546 -6.35329 0.24604 0.34621 1.31641 1.34190 1.48583 1.55714 1.80849 2.33595 2.37523 2.74730 3.03263 3.48848 3.77138 3.83882 3.95667 4.01962 4.12575 4.17985 4.25131 4.34137 4.36225 4.41004 4.46642 4.54333 4.69163 4.72185 4.78887 4.84129 4.87979 5.02572 5.05817 5.14155 5.29235 5.30655 5.34162 5.39788 5.40268 5.51273 5.59008 5.90904 6.21627 6.30619 6.43551 6.70806 7.05355 7.30041 8.82979 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.003934 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.162183 B = 7116.570392 C = 8371.651050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.097 3.903 4 C -0.196 4.196 5 C -0.139 4.139 6 C 0.102 3.898 7 C -0.076 4.076 8 C -0.136 4.136 9 C -0.075 4.075 10 C -0.130 4.130 11 C 0.087 3.913 12 N -0.554 5.554 13 C 0.509 3.491 14 O -0.559 6.559 15 C -0.110 4.110 16 C 0.005 3.995 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.935 3.065 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.124 0.876 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.011 0.989 40 H 0.008 0.992 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -26.531 2.072 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.051 3.949 4 C -0.215 4.215 5 C -0.159 4.159 6 C 0.009 3.991 7 C -0.078 4.078 8 C -0.155 4.155 9 C -0.112 4.112 10 C -0.167 4.167 11 C -0.033 4.033 12 N -0.277 5.277 13 C 0.301 3.699 14 O -0.439 6.439 15 C -0.149 4.149 16 C -0.033 4.033 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.760 3.240 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.173 0.827 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.029 0.971 40 H 0.027 0.973 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.080 -26.503 1.878 26.747 hybrid contribution -1.474 0.831 -0.204 1.704 sum 1.606 -25.672 1.674 25.777 Atomic orbital electron populations 1.23286 0.76953 1.05493 1.01758 1.86022 1.22961 1.26309 1.89091 1.19088 0.92872 0.84201 0.98740 1.21291 1.00745 0.91546 1.07910 1.21950 0.94320 0.99608 1.00052 1.17913 0.91741 0.85238 1.04230 1.19640 0.97414 0.89746 1.01017 1.20384 0.91150 0.98108 1.05844 1.20546 0.87765 0.98890 1.04000 1.21898 1.02180 0.93071 0.99575 1.22415 0.76466 1.02460 1.01978 1.45936 1.11544 1.04085 1.66181 1.21555 0.86146 0.87054 0.75117 1.90456 1.19385 1.86942 1.47071 1.21542 1.00049 0.88319 1.04986 1.19234 0.94790 0.92809 0.96422 1.21385 0.96967 0.90330 1.47836 0.92808 1.25761 1.02746 0.95031 0.94688 1.70009 1.38169 0.98323 1.51757 0.85877 0.80888 0.78075 0.79172 1.19372 1.20362 1.18702 0.92563 0.85798 0.92296 0.84359 0.84030 0.82657 0.88137 0.87974 0.86086 0.92165 0.88859 0.87559 0.87571 0.87429 0.97087 0.97327 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.20 10.50 -93.26 -0.98 -8.18 16 3 C 0.10 2.40 6.68 22.47 0.15 2.55 16 4 C -0.20 -5.42 9.03 22.33 0.20 -5.22 16 5 C -0.14 -4.63 8.87 22.40 0.20 -4.43 16 6 C 0.10 3.06 6.32 38.04 0.24 3.30 16 7 C -0.08 -1.73 5.76 -19.76 -0.11 -1.84 16 8 C -0.14 -3.00 9.60 22.41 0.22 -2.79 16 9 C -0.08 -1.07 5.77 29.76 0.17 -0.90 16 10 C -0.13 -1.86 6.11 30.69 0.19 -1.67 16 11 C 0.09 1.70 6.17 86.44 0.53 2.23 16 12 N -0.55 -16.34 2.98 -629.17 -1.87 -18.21 16 13 C 0.51 18.96 7.55 87.66 0.66 19.62 16 14 O -0.56 -24.93 12.66 -3.07 -0.04 -24.97 16 15 C -0.11 -4.11 4.06 29.85 0.12 -3.99 16 16 C 0.01 0.27 3.35 29.85 0.10 0.37 16 17 C -0.53 -30.01 9.66 25.60 0.25 -29.76 16 18 H 0.05 3.20 7.99 -2.91 -0.02 3.17 16 19 C 0.02 0.92 5.47 84.66 0.46 1.39 16 20 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 21 Si 0.94 46.57 27.47 68.60 1.88 48.46 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.26 -13.06 6.54 99.48 0.65 -12.41 16 25 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 26 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 0.82 7.67 -2.38 -0.02 0.80 16 28 H 0.14 3.30 6.30 -2.91 -0.02 3.28 16 29 H 0.14 5.56 4.97 -21.15 -0.11 5.45 16 30 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.93 6.27 -2.39 -0.01 1.91 16 37 H 0.11 3.58 8.06 -2.38 -0.02 3.56 16 38 H 0.11 3.64 7.60 -2.38 -0.02 3.62 16 39 H 0.01 0.56 7.10 -2.38 -0.02 0.55 16 40 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -75.25 328.88 4.67 -70.59 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.88 Total: 10.30 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.49 Total: -19.74 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -1.57 Total: -76.46 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.02 Total: -33.15 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.88 Total: 48.46 kcal Total: -75.25 4.67 -70.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812534035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.523 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds