Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47045 * 2 1 4 4 C 1.42897 * 113.99671 * 179.97438 * 3 2 1 5 5 C 1.53499 * 114.20522 * 209.99939 * 4 3 2 6 6 N 1.47063 * 87.98739 * 220.14763 * 5 4 3 7 7 C 1.34776 * 136.06178 * 207.08044 * 6 5 4 8 8 O 1.21280 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00288 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47024 * 180.02562 * 9 7 6 11 11 C 1.37635 * 120.12548 * 264.72495 * 10 9 7 12 12 C 1.38611 * 120.24604 * 180.28006 * 11 10 9 13 13 C 1.38665 * 120.50491 * 359.97438 * 12 11 10 14 14 C 1.37597 * 120.24402 * 0.02562 * 13 12 11 15 15 C 1.40695 * 120.12627 * 85.00255 * 10 9 7 16 16 C 1.41399 * 120.24625 * 359.70111 * 15 10 9 17 17 H 1.07999 * 119.99540 * 334.07374 * 16 15 10 18 18 C 1.39947 * 120.00059 * 154.07621 * 16 15 10 19 19 N 1.30819 * 119.99909 * 343.62915 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 163.63589 * 18 16 15 21 21 H 1.48508 * 109.47269 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47219 * 119.99743 * 20 18 16 23 23 H 1.48501 * 109.47311 * 239.99733 * 20 18 16 24 24 C 1.47069 * 87.88638 * 27.34266 * 6 5 4 25 25 H 1.08996 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47134 * 300.00424 * 1 2 3 27 27 H 1.09000 * 109.46712 * 59.99614 * 1 2 3 28 28 H 1.08996 * 109.46687 * 239.99863 * 2 1 3 29 29 H 1.08999 * 109.46923 * 119.99635 * 2 1 3 30 30 H 1.08996 * 113.28646 * 343.06324 * 4 3 2 31 31 H 1.08997 * 113.46871 * 105.36618 * 5 4 3 32 32 H 1.09004 * 113.52325 * 334.93582 * 5 4 3 33 33 H 1.09002 * 109.46963 * 60.00189 * 9 7 6 34 34 H 1.09001 * 109.47040 * 300.00578 * 9 7 6 35 35 H 1.07994 * 119.87908 * 0.25025 * 11 10 9 36 36 H 1.08000 * 119.74977 * 179.97438 * 12 11 10 37 37 H 1.07990 * 119.87834 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.12721 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99812 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.46994 * 87.43226 * 24 6 5 41 41 H 1.08990 * 113.47144 * 217.87802 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9623 2.7185 0.7006 6 7 4.9604 2.8315 -0.3735 7 6 6.1974 3.3519 -0.4980 8 8 6.7273 3.8901 0.4509 9 6 6.9223 3.2650 -1.8164 10 6 8.2754 3.9162 -1.6895 11 6 8.4475 5.2298 -2.0626 12 6 9.6923 5.8295 -1.9524 13 6 10.7769 5.1157 -1.4657 14 6 10.6280 3.8014 -1.0868 15 6 9.3689 3.1820 -1.1948 16 6 9.2038 1.8320 -0.8080 17 1 8.2354 1.4764 -0.4885 18 6 10.2953 0.9567 -0.8391 19 7 11.3706 1.2757 -1.5125 20 14 10.2168 -0.6672 0.0806 21 1 8.9013 -0.7889 0.7589 22 1 10.3851 -1.7882 -0.8788 23 1 11.3018 -0.7155 1.0934 24 6 4.0121 2.1328 -1.2540 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9359 0.5393 0.2926 31 1 4.3986 2.5193 1.6794 32 1 3.2477 3.5415 0.7175 33 1 6.3426 3.7774 -2.5842 34 1 7.0477 2.2183 -2.0938 35 1 7.6098 5.7952 -2.4431 36 1 9.8184 6.8606 -2.2479 37 1 11.7421 5.5931 -1.3837 38 1 11.4741 3.2471 -0.7084 39 1 12.1270 0.6689 -1.5344 40 1 3.3099 2.8007 -1.7530 41 1 4.4907 1.4345 -1.9404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819274816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -26.113649 kcal Electronic energy + Delta-G solvation = -22586.813298 eV Core-core repulsion = 19239.836444 eV Total energy + Delta-G solvation = -3346.976855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26229 -38.40219 -37.29003 -36.33489 -33.60277 -31.79892 -31.38726 -29.45959 -28.83691 -26.54915 -25.82195 -24.84762 -23.09100 -21.91340 -20.90813 -19.82840 -18.53403 -17.38625 -17.13850 -16.58064 -16.03321 -15.48788 -14.99422 -14.97307 -14.46384 -14.29813 -13.89289 -13.51421 -13.18294 -13.02784 -12.68842 -12.57613 -12.47385 -12.17600 -11.95292 -11.69443 -11.54922 -11.37535 -11.15955 -11.05627 -11.00935 -10.95173 -10.65805 -10.37340 -9.65001 -9.46230 -9.35259 -9.20106 -9.14404 -8.44131 -7.29110 -7.27173 -6.72161 -4.32489 2.74347 2.87933 3.07290 3.12556 3.16168 3.24485 3.28047 3.68579 3.94579 4.22813 4.66618 4.72988 4.79642 4.83807 5.05808 5.12153 5.26260 5.36710 5.48000 5.51935 5.62458 5.69179 5.74691 5.78795 5.86396 5.92187 6.06967 6.29897 6.34999 6.45101 6.53977 6.82657 6.99345 7.10561 7.31874 7.44413 7.66665 7.93900 8.04566 8.12246 8.15386 8.33665 8.66532 8.80270 8.93673 9.03585 10.22189 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.004539 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.555809 B = 6167.618841 C = 7613.604062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.049 3.951 5 C 0.102 3.898 6 N -0.654 5.654 7 C 0.549 3.451 8 O -0.515 6.515 9 C -0.061 4.061 10 C -0.183 4.183 11 C -0.081 4.081 12 C -0.239 4.239 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.795 5.795 20 Si 0.903 3.097 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.272 1.272 24 C 0.086 3.914 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.088 0.912 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.007 -4.890 0.100 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.289 6.289 4 C -0.010 4.010 5 C -0.021 4.021 6 N -0.395 5.395 7 C 0.341 3.659 8 O -0.388 6.388 9 C -0.101 4.101 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.258 4.258 13 C -0.125 4.125 14 C -0.178 4.178 15 C 0.126 3.874 16 C -0.486 4.486 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.421 5.421 20 Si 0.727 3.273 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.038 4.038 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.348 -4.429 0.532 15.983 hybrid contribution 0.174 -0.948 0.340 1.022 sum -15.174 -5.377 0.871 16.122 Atomic orbital electron populations 1.21750 0.93738 1.02244 1.03153 1.22559 0.95556 0.83676 1.00406 1.87914 1.19843 1.26665 1.94449 1.24050 0.81240 0.98560 0.97175 1.23037 0.89275 0.96086 0.93723 1.49498 1.14152 1.60949 1.14933 1.20938 0.77601 0.75805 0.91603 1.90699 1.64827 1.42178 1.41073 1.20198 0.94435 1.03072 0.92361 1.19057 0.93463 0.95073 1.10898 1.20306 0.95684 0.94014 0.99906 1.20311 0.93964 0.98518 1.13050 1.20682 0.96490 0.95182 1.00153 1.21293 0.98621 0.93257 1.04648 1.17346 0.90507 0.92366 0.87140 1.19499 0.95942 0.94020 1.39145 0.90827 1.25873 0.94680 1.00171 0.93300 1.69828 1.04806 1.36659 1.30776 0.86354 0.79606 0.81214 0.80095 1.18593 1.20016 1.19679 1.23462 0.90382 0.94985 0.94998 0.91131 0.91861 0.91797 0.93026 0.93136 0.87854 0.90265 0.89605 0.90617 0.88598 0.89733 0.89606 0.89529 0.86509 0.91024 0.89386 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.44 6.50 37.16 0.24 0.68 16 3 O -0.37 -3.92 10.40 -35.23 -0.37 -4.29 16 4 C 0.05 0.54 4.68 -26.08 -0.12 0.42 16 5 C 0.10 1.38 8.45 -8.51 -0.07 1.31 16 6 N -0.65 -10.68 3.69 -185.07 -0.68 -11.36 16 7 C 0.55 11.51 7.70 -10.98 -0.08 11.43 16 8 O -0.51 -13.11 16.81 5.56 0.09 -13.02 16 9 C -0.06 -1.26 5.01 -29.03 -0.15 -1.40 16 10 C -0.18 -4.53 4.43 -103.92 -0.46 -4.99 16 11 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 13 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 14 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 15 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 16 C -0.46 -12.20 8.14 -37.74 -0.31 -12.51 16 17 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 18 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 19 N -0.79 -20.67 10.97 55.55 0.61 -20.06 16 20 Si 0.90 18.97 29.59 -169.99 -5.03 13.94 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.09 1.02 8.28 -8.36 -0.07 0.95 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 34 H 0.10 1.93 7.07 -51.93 -0.37 1.57 16 35 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.25 6.22 -52.49 -0.33 2.92 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -31.81 347.01 -9.06 -40.87 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.08 Total: 4.74 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.83 Total: -16.04 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: -0.07 Total: -31.43 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.27 Total: -17.31 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.81 -9.06 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819274816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.752 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds