Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47045 * 2 1 4 4 C 1.42897 * 113.99671 * 179.97438 * 3 2 1 5 5 C 1.53499 * 114.20522 * 209.99939 * 4 3 2 6 6 N 1.47063 * 87.98739 * 220.14763 * 5 4 3 7 7 C 1.34776 * 136.06178 * 207.08044 * 6 5 4 8 8 O 1.21280 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00288 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47024 * 180.02562 * 9 7 6 11 11 C 1.37635 * 120.12548 * 264.72495 * 10 9 7 12 12 C 1.38611 * 120.24604 * 180.28006 * 11 10 9 13 13 C 1.38665 * 120.50491 * 359.97438 * 12 11 10 14 14 C 1.37597 * 120.24402 * 0.02562 * 13 12 11 15 15 C 1.40695 * 120.12627 * 85.00255 * 10 9 7 16 16 C 1.41399 * 120.24625 * 359.70111 * 15 10 9 17 17 H 1.07999 * 119.99540 * 334.07374 * 16 15 10 18 18 C 1.39947 * 120.00059 * 154.07621 * 16 15 10 19 19 N 1.30819 * 119.99909 * 343.62915 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 163.63589 * 18 16 15 21 21 H 1.48508 * 109.47269 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47219 * 119.99743 * 20 18 16 23 23 H 1.48501 * 109.47311 * 239.99733 * 20 18 16 24 24 C 1.47069 * 87.88638 * 27.34266 * 6 5 4 25 25 H 1.08996 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47134 * 300.00424 * 1 2 3 27 27 H 1.09000 * 109.46712 * 59.99614 * 1 2 3 28 28 H 1.08996 * 109.46687 * 239.99863 * 2 1 3 29 29 H 1.08999 * 109.46923 * 119.99635 * 2 1 3 30 30 H 1.08996 * 113.28646 * 343.06324 * 4 3 2 31 31 H 1.08997 * 113.46871 * 105.36618 * 5 4 3 32 32 H 1.09004 * 113.52325 * 334.93582 * 5 4 3 33 33 H 1.09002 * 109.46963 * 60.00189 * 9 7 6 34 34 H 1.09001 * 109.47040 * 300.00578 * 9 7 6 35 35 H 1.07994 * 119.87908 * 0.25025 * 11 10 9 36 36 H 1.08000 * 119.74977 * 179.97438 * 12 11 10 37 37 H 1.07990 * 119.87834 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.12721 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99812 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.46994 * 87.43226 * 24 6 5 41 41 H 1.08990 * 113.47144 * 217.87802 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9623 2.7185 0.7006 6 7 4.9604 2.8315 -0.3735 7 6 6.1974 3.3519 -0.4980 8 8 6.7273 3.8901 0.4509 9 6 6.9223 3.2650 -1.8164 10 6 8.2754 3.9162 -1.6895 11 6 8.4475 5.2298 -2.0626 12 6 9.6923 5.8295 -1.9524 13 6 10.7769 5.1157 -1.4657 14 6 10.6280 3.8014 -1.0868 15 6 9.3689 3.1820 -1.1948 16 6 9.2038 1.8320 -0.8080 17 1 8.2354 1.4764 -0.4885 18 6 10.2953 0.9567 -0.8391 19 7 11.3706 1.2757 -1.5125 20 14 10.2168 -0.6672 0.0806 21 1 8.9013 -0.7889 0.7589 22 1 10.3851 -1.7882 -0.8788 23 1 11.3018 -0.7155 1.0934 24 6 4.0121 2.1328 -1.2540 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9359 0.5393 0.2926 31 1 4.3986 2.5193 1.6794 32 1 3.2477 3.5415 0.7175 33 1 6.3426 3.7774 -2.5842 34 1 7.0477 2.2183 -2.0938 35 1 7.6098 5.7952 -2.4431 36 1 9.8184 6.8606 -2.2479 37 1 11.7421 5.5931 -1.3837 38 1 11.4741 3.2471 -0.7084 39 1 12.1270 0.6689 -1.5344 40 1 3.3099 2.8007 -1.7530 41 1 4.4907 1.4345 -1.9404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819274816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -45.075490 kcal Electronic energy + Delta-G solvation = -22587.635546 eV Core-core repulsion = 19239.836444 eV Total energy + Delta-G solvation = -3347.799102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47319 -39.91303 -38.83413 -37.51604 -35.51494 -33.52099 -32.15105 -31.37332 -30.21622 -28.08599 -27.09462 -26.59070 -23.70374 -23.09863 -22.83024 -21.53032 -19.88992 -19.06535 -18.34530 -17.91704 -17.35336 -16.94575 -16.35965 -16.30535 -16.01501 -15.54361 -15.40205 -15.06350 -14.56178 -14.39324 -14.25146 -13.72416 -13.54794 -13.39008 -13.13445 -13.06104 -12.94758 -12.79307 -12.75747 -12.66342 -12.50209 -12.12516 -12.06889 -11.85112 -11.34416 -11.23479 -11.04270 -10.87706 -10.43518 -9.74863 -9.24612 -9.18687 -8.60853 -6.31072 0.96051 1.10047 1.34838 1.48321 1.51351 1.71120 1.81124 2.19209 2.75986 2.78390 3.26447 3.58442 3.84246 3.97090 4.13179 4.25341 4.26611 4.36667 4.43248 4.49327 4.53881 4.57271 4.58156 4.62285 4.68470 4.74826 4.76268 4.92154 5.02210 5.08032 5.10127 5.18386 5.34144 5.35108 5.52974 5.75611 6.02256 6.14788 6.19725 6.22411 6.40373 6.69242 6.72996 6.97689 7.09167 7.26067 8.36094 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.004539 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.555809 B = 6167.618841 C = 7613.604062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.379 6.379 4 C 0.069 3.931 5 C 0.093 3.907 6 N -0.658 5.658 7 C 0.548 3.452 8 O -0.575 6.575 9 C -0.057 4.057 10 C -0.191 4.191 11 C -0.092 4.092 12 C -0.242 4.242 13 C -0.116 4.116 14 C -0.193 4.193 15 C 0.096 3.904 16 C -0.483 4.483 17 H 0.069 0.931 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.269 1.269 24 C 0.086 3.914 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.107 0.893 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 -5.895 -0.586 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.297 6.297 4 C 0.009 3.991 5 C -0.030 4.030 6 N -0.396 5.396 7 C 0.340 3.660 8 O -0.454 6.454 9 C -0.096 4.096 10 C -0.193 4.193 11 C -0.110 4.110 12 C -0.261 4.261 13 C -0.134 4.134 14 C -0.213 4.213 15 C 0.093 3.907 16 C -0.513 4.513 17 H 0.087 0.913 18 C -0.178 4.178 19 N -0.452 5.452 20 Si 0.794 3.206 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.194 1.194 24 C -0.036 4.036 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.567 -5.456 -0.188 18.396 hybrid contribution 0.718 -0.574 0.519 1.056 sum -16.849 -6.031 0.331 17.899 Atomic orbital electron populations 1.21767 0.92700 1.03382 1.02830 1.22807 0.96422 0.82489 1.01306 1.87904 1.18961 1.28483 1.94379 1.23749 0.81959 0.97618 0.95724 1.23283 0.88697 0.98079 0.92926 1.49386 1.13525 1.59323 1.17402 1.20783 0.78839 0.75563 0.90811 1.90665 1.66796 1.45272 1.42621 1.20169 0.92993 1.03098 0.93388 1.19528 0.94754 0.95655 1.09376 1.20742 0.96782 0.94005 0.99474 1.20726 0.93629 0.99875 1.11913 1.20966 0.98069 0.94590 0.99807 1.21310 0.98563 0.94489 1.06914 1.17749 0.91448 0.93288 0.88170 1.19627 0.96451 0.94516 1.40667 0.91316 1.26676 0.93972 1.03578 0.93566 1.69883 1.05513 1.38202 1.31561 0.85302 0.79344 0.77097 0.78849 1.18661 1.18225 1.19412 1.23748 0.89468 0.95169 0.95255 0.89298 0.92327 0.91972 0.91906 0.92484 0.86988 0.91290 0.88455 0.87331 0.88543 0.86653 0.86539 0.87482 0.88404 0.90287 0.87497 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.61 6.50 71.98 0.47 1.08 16 3 O -0.38 -7.00 10.40 -148.98 -1.55 -8.55 16 4 C 0.07 1.37 4.68 31.02 0.15 1.51 16 5 C 0.09 2.40 8.45 83.18 0.70 3.10 16 6 N -0.66 -20.65 3.69 -858.32 -3.16 -23.81 16 7 C 0.55 22.89 7.70 87.66 0.67 23.57 16 8 O -0.58 -30.03 16.81 -3.03 -0.05 -30.08 16 9 C -0.06 -2.31 5.01 29.10 0.15 -2.16 16 10 C -0.19 -9.53 4.43 -19.41 -0.09 -9.62 16 11 C -0.09 -4.28 9.66 22.22 0.21 -4.06 16 12 C -0.24 -11.30 10.05 22.46 0.23 -11.08 16 13 C -0.12 -5.83 10.02 22.22 0.22 -5.61 16 14 C -0.19 -10.91 8.69 22.73 0.20 -10.71 16 15 C 0.10 5.38 5.56 -21.29 -0.12 5.26 16 16 C -0.48 -26.59 8.14 23.46 0.19 -26.40 16 17 H 0.07 3.71 6.67 -2.91 -0.02 3.69 16 18 C 0.04 1.89 5.16 85.26 0.44 2.33 16 19 N -0.83 -44.07 10.97 21.83 0.24 -43.83 16 20 Si 0.97 39.24 29.59 68.60 2.03 41.27 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 C 0.09 1.81 8.28 83.27 0.69 2.50 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 2.06 7.88 -2.39 -0.02 2.04 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.11 3.57 8.05 -2.39 -0.02 3.55 16 34 H 0.10 3.85 7.07 -2.39 -0.02 3.84 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.11 4.76 8.06 -2.92 -0.02 4.73 16 38 H 0.10 5.74 6.22 -2.91 -0.02 5.73 16 39 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.31 347.01 3.37 -67.94 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.01 Total: 28.21 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.85 Total: -31.15 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -2.92 Total: -67.64 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.60 Total: -38.63 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -71.31 3.37 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819274816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.867 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds