Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21253 * 120.00627 * 2 1 4 4 C 1.47175 * 119.99926 * 179.97438 * 2 1 3 5 5 C 1.39874 * 120.18100 * 359.97438 * 4 2 1 6 6 C 1.37840 * 119.82641 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.26076 * 0.02562 * 6 5 4 8 8 C 1.38651 * 120.24081 * 0.02562 * 7 6 5 9 9 C 1.37853 * 120.14324 * 359.97438 * 8 7 6 10 10 C 1.51215 * 108.23420 * 179.97438 * 8 7 6 11 11 N 1.48034 * 105.67490 * 17.54288 * 10 8 7 12 12 C 1.46904 * 111.00104 * 212.93564 * 11 10 8 13 13 C 1.52999 * 109.47152 * 184.91383 * 12 11 10 14 14 O 1.42899 * 109.46889 * 64.99954 * 13 12 11 15 15 C 1.42905 * 113.99778 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 C 1.48036 * 103.91420 * 332.31129 * 11 10 8 25 25 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47532 * 300.00212 * 1 2 3 27 27 H 1.09004 * 109.46911 * 60.00375 * 1 2 3 28 28 H 1.08003 * 120.08403 * 0.04616 * 5 4 2 29 29 H 1.08003 * 119.87390 * 180.02562 * 6 5 4 30 30 H 1.07992 * 120.05139 * 180.02562 * 9 8 7 31 31 H 1.09001 * 110.20657 * 258.49381 * 10 8 7 32 32 H 1.08992 * 110.20822 * 136.59642 * 10 8 7 33 33 H 1.09004 * 109.46935 * 64.91490 * 12 11 10 34 34 H 1.08993 * 109.46751 * 304.91816 * 12 11 10 35 35 H 1.08997 * 109.47286 * 304.99937 * 13 12 11 36 36 H 1.08997 * 109.46848 * 185.00035 * 13 12 11 37 37 H 1.09000 * 109.47187 * 300.00233 * 15 14 13 38 38 H 1.09001 * 109.46558 * 60.00281 * 15 14 13 39 39 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 40 40 H 1.09005 * 110.20369 * 146.74362 * 24 11 10 41 41 H 1.09002 * 110.20761 * 268.63329 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5472 -2.4881 0.0017 6 6 2.2438 -3.6776 0.0027 7 6 3.6278 -3.6753 0.0032 8 6 4.3242 -2.4764 0.0033 9 6 3.6410 -1.2790 0.0022 10 6 5.8038 -2.7885 0.0045 11 7 5.9149 -4.2010 -0.4244 12 6 7.0530 -4.8616 0.2287 13 6 7.2096 -6.2775 -0.3292 14 8 7.5563 -6.2083 -1.7137 15 6 7.7277 -7.4840 -2.3345 16 6 8.0901 -7.2923 -3.7847 17 1 8.1801 -6.2960 -4.1917 18 6 8.3057 -8.3889 -4.5922 19 7 8.1946 -9.6022 -4.0969 20 14 8.7542 -8.1514 -6.3898 21 1 10.0196 -7.3803 -6.4867 22 1 8.9312 -9.4770 -7.0352 23 1 7.6677 -7.4079 -7.0770 24 6 4.6333 -4.8052 0.0046 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.4672 -2.4931 0.0013 29 1 1.7075 -4.6150 0.0031 30 1 4.1849 -0.3461 0.0018 31 1 6.2135 -2.6661 1.0072 32 1 6.3261 -2.1394 -0.6982 33 1 6.8762 -4.9119 1.3032 34 1 7.9625 -4.2925 0.0365 35 1 6.2701 -6.8185 -0.2166 36 1 7.9963 -6.7982 0.2168 37 1 8.5253 -8.0293 -1.8300 38 1 6.7990 -8.0502 -2.2634 39 1 8.3467 -10.3736 -4.6649 40 1 4.3289 -5.5808 -0.6981 41 1 4.7304 -5.2217 1.0072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839632724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = -43.318893 kcal Electronic energy + Delta-G solvation = -21782.805738 eV Core-core repulsion = 18435.082808 eV Total energy + Delta-G solvation = -3347.722930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78119 -39.40415 -37.35428 -36.13895 -32.90041 -32.29320 -31.75544 -30.43114 -28.38896 -27.80242 -26.71810 -24.04204 -22.89128 -22.26965 -21.69286 -20.77938 -19.60401 -17.11979 -16.44637 -16.38876 -16.13332 -15.49990 -15.43545 -15.22497 -15.03195 -14.50887 -14.32891 -14.00669 -13.84645 -13.48004 -13.26070 -13.10462 -12.86124 -12.58655 -12.44267 -12.18963 -11.86462 -11.71712 -11.64774 -11.13870 -11.06442 -10.81578 -10.72289 -10.44604 -10.06425 -9.98305 -9.17824 -9.13306 -9.06184 -8.77791 -8.23268 -8.11645 -6.07596 -4.08538 0.37809 1.10556 2.11631 3.35198 3.37311 3.41892 3.48458 3.65778 3.92352 4.22320 4.34218 4.38101 4.62523 4.68894 4.77767 4.87746 5.03806 5.07199 5.12540 5.27155 5.28876 5.32400 5.35988 5.46901 5.52846 5.58924 5.70599 5.76907 5.78765 5.89049 6.00087 6.03247 6.09672 6.22348 6.29150 6.59578 6.80079 7.01005 7.13425 7.21975 7.46098 7.84062 8.19843 8.63817 9.05673 9.56176 11.04051 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002795 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.426351 B =10017.068940 C =10455.646896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.462 6.462 4 C -0.178 4.178 5 C -0.072 4.072 6 C -0.115 4.115 7 C -0.059 4.059 8 C -0.112 4.112 9 C -0.041 4.041 10 C 0.074 3.926 11 N -0.485 5.485 12 C 0.050 3.950 13 C 0.068 3.932 14 O -0.380 6.380 15 C 0.195 3.805 16 C -0.511 4.511 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.067 3.933 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 13.936 13.206 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.277 3.723 3 O -0.339 6.339 4 C -0.179 4.179 5 C -0.090 4.090 6 C -0.133 4.133 7 C -0.060 4.060 8 C -0.112 4.112 9 C -0.060 4.060 10 C -0.053 4.053 11 N -0.208 5.208 12 C -0.078 4.078 13 C -0.010 4.010 14 O -0.299 6.299 15 C 0.120 3.880 16 C -0.549 4.549 17 H 0.084 0.916 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.060 4.060 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.321 14.392 12.469 23.826 hybrid contribution 0.043 -0.451 0.078 0.460 sum -14.277 13.941 12.547 23.572 Atomic orbital electron populations 1.22237 0.93762 1.04884 1.04953 1.22463 0.91633 0.87517 0.70689 1.90539 1.72106 1.34393 1.36821 1.20361 0.94109 0.94851 1.08560 1.21392 0.99939 0.91121 0.96542 1.20495 0.92442 0.98565 1.01813 1.21036 0.94040 0.95878 0.95068 1.20613 0.96362 0.93255 1.01009 1.20673 0.92783 0.97512 0.95031 1.21693 0.91540 0.91992 1.00123 1.65310 1.01400 1.00671 1.53427 1.22454 0.94388 0.96305 0.94673 1.22189 0.98240 0.93989 0.86621 1.87957 1.90102 1.32531 1.19351 1.20176 0.94908 0.80015 0.92864 1.21029 1.46842 0.93505 0.93556 0.91554 1.24946 0.95511 0.94812 0.99297 1.69956 1.49873 0.97737 1.36479 0.86400 0.79162 0.77144 0.83797 1.20033 1.21223 1.19998 1.21851 0.88158 0.95610 1.00365 0.89713 0.88788 0.88703 0.84545 0.85088 0.84947 0.92141 0.88676 0.93680 0.89415 0.94616 0.94016 0.97975 0.97912 0.92682 0.88150 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 10.19 36.00 0.37 -0.77 16 2 C 0.40 3.90 7.23 -30.68 -0.22 3.68 16 3 O -0.46 -6.12 17.09 5.58 0.10 -6.03 16 4 C -0.18 -1.84 5.87 -105.06 -0.62 -2.45 16 5 C -0.07 -0.62 9.45 -39.12 -0.37 -0.98 16 6 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 7 C -0.06 -0.72 6.27 -104.14 -0.65 -1.37 16 8 C -0.11 -1.38 6.25 -104.36 -0.65 -2.03 16 9 C -0.04 -0.48 9.59 -39.13 -0.38 -0.86 16 10 C 0.07 0.92 6.61 -4.10 -0.03 0.90 16 11 N -0.48 -7.30 5.42 -234.88 -1.27 -8.57 16 12 C 0.05 0.72 5.02 -3.82 -0.02 0.70 16 13 C 0.07 1.23 6.08 37.16 0.23 1.45 16 14 O -0.38 -9.23 10.27 -35.23 -0.36 -9.59 16 15 C 0.19 5.39 5.69 36.01 0.20 5.59 16 16 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 16 17 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 20 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.07 0.88 5.64 -4.08 -0.02 0.86 16 25 H 0.08 0.31 5.61 -51.93 -0.29 0.02 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.14 0.70 5.93 -52.48 -0.31 0.39 16 29 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.13 1.50 7.65 -52.49 -0.40 1.10 16 31 H 0.06 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 34 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.04 0.62 7.35 -51.93 -0.38 0.24 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16 41 H 0.06 0.73 7.61 -51.93 -0.40 0.33 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -34.44 344.77 -9.55 -43.99 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -5.94 Total: -4.82 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.98 Total: -10.89 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.54 Total: -34.99 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.27 Total: -15.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.44 -9.55 -43.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839632724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.673 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds