Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21253 * 120.00627 * 2 1 4 4 C 1.47175 * 119.99926 * 179.97438 * 2 1 3 5 5 C 1.39874 * 120.18100 * 359.97438 * 4 2 1 6 6 C 1.37840 * 119.82641 * 180.02562 * 5 4 2 7 7 C 1.38405 * 120.26076 * 0.02562 * 6 5 4 8 8 C 1.38651 * 120.24081 * 0.02562 * 7 6 5 9 9 C 1.37853 * 120.14324 * 359.97438 * 8 7 6 10 10 C 1.51215 * 108.23420 * 179.97438 * 8 7 6 11 11 N 1.48034 * 105.67490 * 17.54288 * 10 8 7 12 12 C 1.46904 * 111.00104 * 212.93564 * 11 10 8 13 13 C 1.52999 * 109.47152 * 184.91383 * 12 11 10 14 14 O 1.42899 * 109.46889 * 64.99954 * 13 12 11 15 15 C 1.42905 * 113.99778 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 C 1.48036 * 103.91420 * 332.31129 * 11 10 8 25 25 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47532 * 300.00212 * 1 2 3 27 27 H 1.09004 * 109.46911 * 60.00375 * 1 2 3 28 28 H 1.08003 * 120.08403 * 0.04616 * 5 4 2 29 29 H 1.08003 * 119.87390 * 180.02562 * 6 5 4 30 30 H 1.07992 * 120.05139 * 180.02562 * 9 8 7 31 31 H 1.09001 * 110.20657 * 258.49381 * 10 8 7 32 32 H 1.08992 * 110.20822 * 136.59642 * 10 8 7 33 33 H 1.09004 * 109.46935 * 64.91490 * 12 11 10 34 34 H 1.08993 * 109.46751 * 304.91816 * 12 11 10 35 35 H 1.08997 * 109.47286 * 304.99937 * 13 12 11 36 36 H 1.08997 * 109.46848 * 185.00035 * 13 12 11 37 37 H 1.09000 * 109.47187 * 300.00233 * 15 14 13 38 38 H 1.09001 * 109.46558 * 60.00281 * 15 14 13 39 39 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 40 40 H 1.09005 * 110.20369 * 146.74362 * 24 11 10 41 41 H 1.09002 * 110.20761 * 268.63329 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5472 -2.4881 0.0017 6 6 2.2438 -3.6776 0.0027 7 6 3.6278 -3.6753 0.0032 8 6 4.3242 -2.4764 0.0033 9 6 3.6410 -1.2790 0.0022 10 6 5.8038 -2.7885 0.0045 11 7 5.9149 -4.2010 -0.4244 12 6 7.0530 -4.8616 0.2287 13 6 7.2096 -6.2775 -0.3292 14 8 7.5563 -6.2083 -1.7137 15 6 7.7277 -7.4840 -2.3345 16 6 8.0901 -7.2923 -3.7847 17 1 8.1801 -6.2960 -4.1917 18 6 8.3057 -8.3889 -4.5922 19 7 8.1946 -9.6022 -4.0969 20 14 8.7542 -8.1514 -6.3898 21 1 10.0196 -7.3803 -6.4867 22 1 8.9312 -9.4770 -7.0352 23 1 7.6677 -7.4079 -7.0770 24 6 4.6333 -4.8052 0.0046 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.4672 -2.4931 0.0013 29 1 1.7075 -4.6150 0.0031 30 1 4.1849 -0.3461 0.0018 31 1 6.2135 -2.6661 1.0072 32 1 6.3261 -2.1394 -0.6982 33 1 6.8762 -4.9119 1.3032 34 1 7.9625 -4.2925 0.0365 35 1 6.2701 -6.8185 -0.2166 36 1 7.9963 -6.7982 0.2168 37 1 8.5253 -8.0293 -1.8300 38 1 6.7990 -8.0502 -2.2634 39 1 8.3467 -10.3736 -4.6649 40 1 4.3289 -5.5808 -0.6981 41 1 4.7304 -5.2217 1.0072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839632724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = -66.515032 kcal Electronic energy + Delta-G solvation = -21783.811598 eV Core-core repulsion = 18435.082808 eV Total energy + Delta-G solvation = -3348.728790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65192 -40.28421 -38.73907 -37.52202 -34.94858 -33.44209 -32.59086 -31.30718 -29.75517 -28.78638 -28.44550 -25.13912 -24.42986 -23.73506 -22.60958 -21.95154 -20.39108 -18.61697 -17.89611 -17.57366 -17.36714 -16.85617 -16.50298 -16.26813 -16.19558 -15.96465 -15.71297 -15.16004 -14.74519 -14.62964 -14.53448 -14.13439 -13.98257 -13.77340 -13.28572 -13.22693 -13.01199 -12.93759 -12.85758 -12.70975 -12.60915 -12.38976 -12.20258 -11.89992 -11.72706 -11.26429 -10.85446 -10.82670 -10.18550 -10.06288 -9.95259 -9.22000 -8.31370 -6.43046 -0.42882 0.30161 1.34685 1.39607 1.44376 1.52741 2.35352 2.68649 2.83056 2.98064 3.02151 3.22609 3.42243 3.45902 3.90846 4.02621 4.08881 4.16371 4.21450 4.34198 4.37658 4.41001 4.49790 4.51470 4.57994 4.66519 4.72858 4.75201 4.83443 4.87387 4.94998 4.98832 5.06694 5.20318 5.22777 5.34771 5.40341 5.55857 5.78468 5.81293 5.93792 5.99511 6.50157 6.57455 6.86994 7.29050 8.80726 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002795 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.426351 B =10017.068940 C =10455.646896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.398 3.602 3 O -0.507 6.507 4 C -0.189 4.189 5 C -0.056 4.056 6 C -0.116 4.116 7 C -0.076 4.076 8 C -0.127 4.127 9 C -0.058 4.058 10 C 0.077 3.923 11 N -0.520 5.520 12 C 0.059 3.941 13 C 0.058 3.942 14 O -0.397 6.397 15 C 0.210 3.790 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.267 1.267 24 C 0.070 3.930 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.179 0.821 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.052 0.948 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.271 0.729 40 H 0.081 0.919 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 14.191 13.228 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.280 3.720 3 O -0.386 6.386 4 C -0.189 4.189 5 C -0.073 4.073 6 C -0.134 4.134 7 C -0.077 4.077 8 C -0.128 4.128 9 C -0.077 4.077 10 C -0.050 4.050 11 N -0.244 5.244 12 C -0.069 4.069 13 C -0.019 4.019 14 O -0.317 6.317 15 C 0.135 3.865 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.192 1.192 24 C -0.057 4.057 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.196 0.804 29 H 0.173 0.827 30 H 0.142 0.858 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.003 0.997 38 H 0.001 0.999 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.195 14.646 12.517 25.169 hybrid contribution 0.566 -0.532 0.157 0.792 sum -15.629 14.115 12.675 24.579 Atomic orbital electron populations 1.22284 0.89949 1.06962 1.05954 1.23095 0.93598 0.86445 0.68865 1.90530 1.73357 1.35660 1.39092 1.20664 0.93699 0.96223 1.08362 1.21817 1.01876 0.89612 0.94006 1.20866 0.91615 1.00201 1.00767 1.21130 0.95086 0.95070 0.96390 1.20608 0.96221 0.93723 1.02251 1.20757 0.93898 0.97027 0.96007 1.21635 0.92144 0.90428 1.00760 1.65184 1.02275 1.02096 1.54837 1.22361 0.94479 0.93705 0.96308 1.22555 0.98670 0.97069 0.83644 1.87908 1.90357 1.30643 1.22807 1.19776 0.93124 0.81071 0.92516 1.21355 1.48464 0.93601 0.95055 0.92374 1.25935 0.94644 0.94214 1.04379 1.70056 1.49789 0.98618 1.38504 0.85268 0.79196 0.77774 0.77383 1.19068 1.19794 1.19198 1.21776 0.87767 0.95535 1.00654 0.87108 0.87451 0.87777 0.80352 0.82681 0.85764 0.90368 0.89585 0.90019 0.89656 0.94137 0.92976 0.99691 0.99873 0.92043 0.90063 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 10.19 71.23 0.73 -0.83 16 2 C 0.40 7.25 7.23 28.03 0.20 7.45 16 3 O -0.51 -13.48 17.09 -2.94 -0.05 -13.53 16 4 C -0.19 -3.63 5.87 -20.15 -0.12 -3.74 16 5 C -0.06 -0.78 9.45 22.57 0.21 -0.56 16 6 C -0.12 -2.00 10.02 22.22 0.22 -1.78 16 7 C -0.08 -1.77 6.27 -19.55 -0.12 -1.89 16 8 C -0.13 -3.14 6.25 -19.69 -0.12 -3.27 16 9 C -0.06 -1.37 9.59 22.56 0.22 -1.16 16 10 C 0.08 1.95 6.61 85.50 0.56 2.51 16 11 N -0.52 -15.70 5.42 -897.03 -4.86 -20.56 16 12 C 0.06 1.68 5.02 86.30 0.43 2.11 16 13 C 0.06 2.12 6.08 71.98 0.44 2.55 16 14 O -0.40 -19.87 10.27 -148.98 -1.53 -21.40 16 15 C 0.21 12.05 5.69 71.24 0.41 12.45 16 16 C -0.55 -33.44 9.43 25.60 0.24 -33.20 16 17 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 20 Si 0.98 45.24 29.54 68.60 2.03 47.27 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.07 1.80 5.64 85.51 0.48 2.28 16 25 H 0.11 0.26 5.61 -2.39 -0.01 0.25 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.18 0.90 5.93 -2.91 -0.02 0.88 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.12 3.00 7.65 -2.91 -0.02 2.98 16 31 H 0.08 1.63 7.81 -2.39 -0.02 1.61 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 1.72 7.82 -2.38 -0.02 1.70 16 34 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 35 H 0.04 1.43 7.35 -2.39 -0.02 1.41 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.08 2.35 8.10 -2.38 -0.02 2.33 16 41 H 0.08 1.75 7.61 -2.39 -0.02 1.73 16 Total: -1.00 -76.79 344.77 1.14 -75.65 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.02 Total: 5.01 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.24 Total: -16.21 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -4.58 Total: -76.79 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.58 Total: -34.93 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.79 1.14 -75.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839632724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.136 kcal (2) G-P(sol) polarization free energy of solvation -76.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds