Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.47395 * 2 1 4 4 C 1.34840 * 116.99779 * 180.02562 * 3 2 1 5 5 C 1.34426 * 119.99707 * 180.02562 * 4 3 2 6 6 C 1.41765 * 120.00275 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99406 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00398 * 5.57651 * 8 6 5 10 10 C 1.50695 * 109.46994 * 270.00061 * 9 8 6 11 11 H 1.08001 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99864 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00210 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99831 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46983 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47115 * 120.00267 * 14 12 10 17 17 H 1.48502 * 109.47267 * 240.00447 * 14 12 10 18 18 C 1.39845 * 119.99884 * 185.57520 * 8 6 5 19 19 C 1.38889 * 120.07254 * 55.97362 * 18 8 6 20 20 C 1.38108 * 119.92985 * 179.97438 * 19 18 8 21 21 C 1.38287 * 120.07272 * 0.25682 * 20 19 18 22 22 C 1.50698 * 119.93298 * 179.72008 * 21 20 19 23 23 C 1.38292 * 120.14193 * 359.49324 * 21 20 19 24 24 C 1.38102 * 120.07088 * 0.50248 * 23 21 20 25 25 H 1.09005 * 109.46546 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47079 * 300.00680 * 1 2 3 28 28 H 1.09003 * 109.47508 * 239.99642 * 2 1 3 29 29 H 1.09004 * 109.46998 * 119.99955 * 2 1 3 30 30 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.00240 * 359.97438 * 5 4 3 32 32 H 1.09000 * 109.46850 * 29.99928 * 9 8 6 33 33 H 1.08994 * 109.47101 * 149.99939 * 9 8 6 34 34 H 0.96998 * 120.00412 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.03760 * 359.95575 * 19 18 8 36 36 H 1.08001 * 119.96602 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47320 * 89.99842 * 22 21 20 38 38 H 1.08997 * 109.47587 * 210.00076 * 22 21 20 39 39 H 1.09004 * 109.46982 * 330.00387 * 22 21 20 40 40 H 1.08005 * 119.96258 * 180.23813 * 23 21 20 41 41 H 1.07997 * 120.03573 * 179.77359 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3509 1.5455 -0.0005 5 6 3.8647 2.7877 0.0000 6 6 5.2701 2.9735 -0.0001 7 8 6.0117 2.0079 0.0000 8 7 5.7853 4.2189 -0.0001 9 6 4.8985 5.3785 0.1232 10 6 4.4668 5.8288 -1.2486 11 1 4.8183 5.3040 -2.1247 12 6 3.6233 6.9108 -1.3853 13 7 3.1957 7.5501 -0.3186 14 14 3.0876 7.4685 -3.0857 15 1 3.7026 6.5886 -4.1118 16 1 1.6083 7.3901 -3.1893 17 1 3.5258 8.8699 -3.3079 18 6 7.1664 4.4042 -0.1178 19 6 7.8509 3.8673 -1.2004 20 6 9.2148 4.0526 -1.3140 21 6 9.8998 4.7674 -0.3484 22 6 11.3889 4.9623 -0.4722 23 6 9.2204 5.3077 0.7281 24 6 7.8566 5.1261 0.8475 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0087 0.6890 -0.0005 31 1 3.2069 3.6443 0.0004 32 1 4.0208 5.1041 0.7084 33 1 5.4286 6.1898 0.6219 34 1 2.6020 8.3111 -0.4147 35 1 7.3173 3.3052 -1.9525 36 1 9.7477 3.6350 -2.1554 37 1 11.5906 5.8757 -1.0318 38 1 11.8291 5.0406 0.5219 39 1 11.8244 4.1115 -0.9964 40 1 9.7577 5.8687 1.4785 41 1 7.3272 5.5452 1.6904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847401544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -34.790048 kcal Electronic energy + Delta-G solvation = -22430.692380 eV Core-core repulsion = 19083.339289 eV Total energy + Delta-G solvation = -3347.353092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96517 -38.78175 -37.98880 -35.15033 -32.93198 -32.48089 -31.43921 -30.46797 -30.12276 -27.43913 -26.00853 -23.59550 -23.15619 -22.55565 -21.94264 -20.54162 -18.41991 -17.66761 -16.67571 -16.35741 -15.88184 -15.61812 -15.10934 -14.91197 -14.66946 -14.31937 -13.72371 -13.56657 -13.42080 -12.99391 -12.91662 -12.91113 -12.53625 -12.35278 -12.03342 -11.99109 -11.63985 -11.45197 -11.19806 -11.05228 -11.02561 -10.94475 -10.67330 -10.61264 -10.13418 -9.78813 -9.24707 -8.59204 -8.52519 -8.42105 -8.23565 -7.30503 -6.14301 -4.20864 1.68330 1.92304 2.04073 3.17490 3.25489 3.33389 3.38638 4.00021 4.10524 4.32264 4.41589 4.83329 4.84131 5.10524 5.18187 5.19391 5.23278 5.24478 5.44828 5.47692 5.62566 5.68675 5.77654 5.90600 5.91750 5.95030 6.02772 6.15529 6.22208 6.48334 6.50413 6.59818 6.71920 6.92188 7.02126 7.03780 7.22464 7.33829 7.56729 7.75463 7.83364 8.07395 8.26542 8.82531 9.02476 9.45923 10.92531 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005569 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.668754 B = 5026.567772 C = 7164.864609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.115 3.885 5 C -0.269 4.269 6 C 0.572 3.428 7 O -0.578 6.578 8 N -0.554 5.554 9 C 0.237 3.763 10 C -0.532 4.532 11 H 0.062 0.938 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.179 3.821 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.109 4.109 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -10.146 1.450 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.048 3.952 5 C -0.291 4.291 6 C 0.367 3.633 7 O -0.462 6.462 8 N -0.278 5.278 9 C 0.119 3.881 10 C -0.570 4.570 11 H 0.080 0.920 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.209 1.209 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.163 4.163 23 C -0.128 4.128 24 C -0.148 4.148 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.514 -10.325 1.521 11.013 hybrid contribution -0.476 0.437 -0.978 1.172 sum 3.038 -9.888 0.543 10.359 Atomic orbital electron populations 1.21768 0.92900 1.02571 1.03839 1.23251 0.96128 0.81205 1.01543 1.86291 1.20697 1.29031 1.87136 1.22839 0.82756 0.98054 0.91526 1.21175 0.95634 0.97770 1.14534 1.16632 0.88320 0.82342 0.76012 1.90728 1.62430 1.39962 1.53125 1.45809 1.04501 1.08133 1.69404 1.19621 0.88759 0.81702 0.98050 1.21474 1.28973 1.14092 0.92509 0.91993 1.24912 0.95727 0.95982 0.97136 1.69924 1.33776 1.20937 1.28424 0.86446 0.78407 0.78562 0.84130 1.19652 1.20791 1.20853 1.17601 0.83773 0.96736 0.93235 1.21086 0.94363 1.00591 0.96805 1.20764 0.93707 0.99701 0.98685 1.19754 0.95753 0.99982 0.95914 1.20689 0.91918 1.01714 1.01935 1.20739 0.93662 1.00350 0.98036 1.21102 0.94085 1.01136 0.98440 0.91348 0.90550 0.91392 0.91782 0.91802 0.85183 0.83365 0.93647 0.94211 0.92577 0.86382 0.86502 0.91715 0.92047 0.92084 0.86351 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.96 16 2 C 0.05 0.56 6.85 37.16 0.25 0.82 16 3 O -0.32 -4.95 10.18 -16.25 -0.17 -5.12 16 4 C 0.11 1.96 9.91 29.39 0.29 2.25 16 5 C -0.27 -5.53 8.91 -39.58 -0.35 -5.88 16 6 C 0.57 12.84 7.21 -14.91 -0.11 12.73 16 7 O -0.58 -13.51 15.43 5.15 0.08 -13.43 16 8 N -0.55 -12.72 2.56 -117.90 -0.30 -13.02 16 9 C 0.24 5.92 4.67 -5.19 -0.02 5.90 16 10 C -0.53 -14.41 9.25 -34.44 -0.32 -14.73 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 14 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.18 3.86 5.19 -83.72 -0.43 3.43 16 19 C -0.11 -2.18 8.92 -39.39 -0.35 -2.54 16 20 C -0.11 -1.86 9.69 -39.61 -0.38 -2.24 16 21 C -0.11 -1.77 5.88 -104.58 -0.62 -2.39 16 22 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 23 C -0.11 -1.79 9.69 -39.61 -0.38 -2.17 16 24 C -0.13 -2.45 9.30 -39.39 -0.37 -2.82 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.13 2.02 7.39 -52.49 -0.39 1.63 16 31 H 0.15 3.31 6.16 -52.49 -0.32 2.98 16 32 H 0.05 1.16 6.34 -51.93 -0.33 0.83 16 33 H 0.04 1.03 7.29 -51.93 -0.38 0.66 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.12 2.43 8.03 -52.49 -0.42 2.01 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.12 2.26 7.78 -52.49 -0.41 1.85 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -31.31 353.80 -7.50 -38.81 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.02 Total: 3.41 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.15 Total: -7.79 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.43 Total: -37.43 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.09 Total: -18.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.31 -7.50 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847401544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.022 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds