Wall clock time and date at job start Tue Mar 31 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.47395 * 2 1 4 4 C 1.34840 * 116.99779 * 180.02562 * 3 2 1 5 5 C 1.34426 * 119.99707 * 180.02562 * 4 3 2 6 6 C 1.41765 * 120.00275 * 179.97438 * 5 4 3 7 7 O 1.21743 * 119.99406 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00398 * 5.57651 * 8 6 5 10 10 C 1.50695 * 109.46994 * 270.00061 * 9 8 6 11 11 H 1.08001 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99864 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00210 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99831 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46983 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47115 * 120.00267 * 14 12 10 17 17 H 1.48502 * 109.47267 * 240.00447 * 14 12 10 18 18 C 1.39845 * 119.99884 * 185.57520 * 8 6 5 19 19 C 1.38889 * 120.07254 * 55.97362 * 18 8 6 20 20 C 1.38108 * 119.92985 * 179.97438 * 19 18 8 21 21 C 1.38287 * 120.07272 * 0.25682 * 20 19 18 22 22 C 1.50698 * 119.93298 * 179.72008 * 21 20 19 23 23 C 1.38292 * 120.14193 * 359.49324 * 21 20 19 24 24 C 1.38102 * 120.07088 * 0.50248 * 23 21 20 25 25 H 1.09005 * 109.46546 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47079 * 300.00680 * 1 2 3 28 28 H 1.09003 * 109.47508 * 239.99642 * 2 1 3 29 29 H 1.09004 * 109.46998 * 119.99955 * 2 1 3 30 30 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.00240 * 359.97438 * 5 4 3 32 32 H 1.09000 * 109.46850 * 29.99928 * 9 8 6 33 33 H 1.08994 * 109.47101 * 149.99939 * 9 8 6 34 34 H 0.96998 * 120.00412 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.03760 * 359.95575 * 19 18 8 36 36 H 1.08001 * 119.96602 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47320 * 89.99842 * 22 21 20 38 38 H 1.08997 * 109.47587 * 210.00076 * 22 21 20 39 39 H 1.09004 * 109.46982 * 330.00387 * 22 21 20 40 40 H 1.08005 * 119.96258 * 180.23813 * 23 21 20 41 41 H 1.07997 * 120.03573 * 179.77359 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3509 1.5455 -0.0005 5 6 3.8647 2.7877 0.0000 6 6 5.2701 2.9735 -0.0001 7 8 6.0117 2.0079 0.0000 8 7 5.7853 4.2189 -0.0001 9 6 4.8985 5.3785 0.1232 10 6 4.4668 5.8288 -1.2486 11 1 4.8183 5.3040 -2.1247 12 6 3.6233 6.9108 -1.3853 13 7 3.1957 7.5501 -0.3186 14 14 3.0876 7.4685 -3.0857 15 1 3.7026 6.5886 -4.1118 16 1 1.6083 7.3901 -3.1893 17 1 3.5258 8.8699 -3.3079 18 6 7.1664 4.4042 -0.1178 19 6 7.8509 3.8673 -1.2004 20 6 9.2148 4.0526 -1.3140 21 6 9.8998 4.7674 -0.3484 22 6 11.3889 4.9623 -0.4722 23 6 9.2204 5.3077 0.7281 24 6 7.8566 5.1261 0.8475 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0087 0.6890 -0.0005 31 1 3.2069 3.6443 0.0004 32 1 4.0208 5.1041 0.7084 33 1 5.4286 6.1898 0.6219 34 1 2.6020 8.3111 -0.4147 35 1 7.3173 3.3052 -1.9525 36 1 9.7477 3.6350 -2.1554 37 1 11.5906 5.8757 -1.0318 38 1 11.8291 5.0406 0.5219 39 1 11.8244 4.1115 -0.9964 40 1 9.7577 5.8687 1.4785 41 1 7.3272 5.5452 1.6904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847401544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:44 Heat of formation + Delta-G solvation = -52.141464 kcal Electronic energy + Delta-G solvation = -22431.444794 eV Core-core repulsion = 19083.339289 eV Total energy + Delta-G solvation = -3348.105506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57494 -40.08897 -39.41420 -36.87931 -34.78103 -33.81938 -32.74341 -31.86656 -31.35031 -29.35215 -27.34499 -25.30842 -24.43881 -23.76983 -23.44071 -21.93945 -19.99694 -19.08401 -18.69385 -18.03869 -17.21392 -16.91946 -16.51638 -16.40913 -16.33539 -15.92675 -15.24417 -14.91443 -14.50019 -14.45453 -14.36360 -14.26868 -13.90388 -13.61071 -13.38706 -13.14104 -12.99155 -12.92698 -12.79631 -12.60250 -12.46899 -12.23907 -12.08694 -11.96798 -11.92003 -11.73423 -11.00195 -10.62754 -10.21886 -9.83396 -9.68722 -8.90056 -8.22654 -6.38601 0.20935 0.50913 0.58509 1.36994 1.38296 1.50545 1.91591 2.32425 2.43530 2.56884 2.89081 3.05930 3.70161 3.96451 4.07146 4.08198 4.11989 4.13448 4.33627 4.36705 4.51563 4.54638 4.59187 4.73389 4.86088 4.90640 4.94358 4.94763 4.97407 5.06151 5.15601 5.18258 5.23000 5.26743 5.43701 5.56537 5.67402 5.70715 5.85466 6.00140 6.20237 6.29220 6.47020 6.73751 7.25895 7.36250 8.82352 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005569 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.668754 B = 5026.567772 C = 7164.864609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.336 6.336 4 C 0.168 3.832 5 C -0.320 4.320 6 C 0.570 3.430 7 O -0.597 6.597 8 N -0.559 5.559 9 C 0.257 3.743 10 C -0.542 4.542 11 H 0.047 0.953 12 C 0.021 3.979 13 N -0.920 5.920 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.273 1.273 17 H -0.274 1.274 18 C 0.136 3.864 19 C -0.130 4.130 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.106 4.106 24 C -0.145 4.145 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -11.129 0.754 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.247 6.247 4 C 0.100 3.900 5 C -0.342 4.342 6 C 0.367 3.633 7 O -0.483 6.483 8 N -0.284 5.284 9 C 0.137 3.863 10 C -0.580 4.580 11 H 0.065 0.935 12 C -0.179 4.179 13 N -0.559 5.559 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.198 1.198 17 H -0.199 1.199 18 C 0.044 3.956 19 C -0.150 4.150 20 C -0.128 4.128 21 C -0.105 4.105 22 C -0.159 4.159 23 C -0.124 4.124 24 C -0.165 4.165 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.165 0.835 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.699 -11.317 0.829 12.282 hybrid contribution -0.878 0.596 -0.725 1.285 sum 3.820 -10.721 0.105 11.382 Atomic orbital electron populations 1.21835 0.91512 1.04443 1.03132 1.23754 0.97269 0.78639 1.03615 1.86293 1.19763 1.33013 1.85670 1.22935 0.83638 0.97255 0.86185 1.20860 0.94501 0.98462 1.20422 1.16845 0.88933 0.82032 0.75517 1.90676 1.62924 1.40004 1.54733 1.45703 1.05224 1.07608 1.69880 1.19179 0.88363 0.81982 0.96781 1.21584 1.29336 1.14346 0.92780 0.93451 1.25670 0.95577 0.95905 1.00792 1.70013 1.34259 1.21383 1.30289 0.85476 0.78273 0.78203 0.79579 1.19758 1.19838 1.19919 1.17995 0.83284 0.99253 0.95066 1.21130 0.95994 1.01472 0.96426 1.21134 0.92393 0.99354 0.99929 1.20294 0.98135 0.97661 0.94399 1.20776 0.88412 1.03090 1.03664 1.21161 0.92441 0.99818 0.99015 1.21259 0.95654 1.01438 0.98160 0.92209 0.87326 0.91994 0.89864 0.89596 0.82972 0.86075 0.95068 0.95980 0.92161 0.88127 0.83526 0.90275 0.90167 0.90441 0.82956 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.29 71.98 0.74 -1.60 16 2 C 0.04 0.76 6.85 71.98 0.49 1.25 16 3 O -0.34 -10.20 10.18 -81.07 -0.82 -11.03 16 4 C 0.17 5.75 9.91 66.95 0.66 6.41 16 5 C -0.32 -13.91 8.91 22.27 0.20 -13.71 16 6 C 0.57 27.12 7.21 85.11 0.61 27.74 16 7 O -0.60 -29.00 15.43 -4.49 -0.07 -29.06 16 8 N -0.56 -27.51 2.56 -645.13 -1.65 -29.16 16 9 C 0.26 13.75 4.67 85.63 0.40 14.15 16 10 C -0.54 -30.87 9.25 25.60 0.24 -30.63 16 11 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 12 C 0.02 1.16 5.46 84.66 0.46 1.62 16 13 N -0.92 -53.35 13.29 21.45 0.28 -53.06 16 14 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 15 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C 0.14 6.14 5.19 38.18 0.20 6.34 16 19 C -0.13 -5.42 8.92 22.39 0.20 -5.22 16 20 C -0.11 -3.58 9.69 22.25 0.22 -3.37 16 21 C -0.10 -3.01 5.88 -19.84 -0.12 -3.13 16 22 C -0.10 -1.94 10.01 71.24 0.71 -1.23 16 23 C -0.11 -3.32 9.69 22.25 0.22 -3.10 16 24 C -0.15 -5.76 9.30 22.40 0.21 -5.55 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.15 4.54 7.39 -2.91 -0.02 4.52 16 31 H 0.12 5.88 6.16 -2.91 -0.02 5.86 16 32 H 0.03 1.74 6.34 -2.39 -0.02 1.72 16 33 H 0.02 1.24 7.29 -2.39 -0.02 1.22 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.10 4.40 8.03 -2.91 -0.02 4.37 16 36 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 40 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.12 4.60 7.78 -2.91 -0.02 4.58 16 Total: -1.00 -71.40 353.80 6.21 -65.18 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.01 Total: 20.86 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.44 Total: -10.03 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.37 Total: -82.22 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.89 Total: -40.09 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.40 6.21 -65.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847401544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.041 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds