Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47145 * 2 1 4 4 C 1.35806 * 116.99783 * 180.02562 * 3 2 1 5 5 C 1.38919 * 119.90053 * 179.97438 * 4 3 2 6 6 C 1.37792 * 120.08919 * 180.02562 * 5 4 3 7 7 C 1.39697 * 119.90425 * 0.02562 * 6 5 4 8 8 C 1.47526 * 120.08843 * 180.02562 * 7 6 5 9 9 N 1.29394 * 119.99717 * 180.02562 * 8 7 6 10 10 O 1.41603 * 119.99916 * 179.97438 * 9 8 7 11 11 C 1.42901 * 114.00276 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47335 * 180.02562 * 11 10 9 13 13 C 1.50699 * 115.55047 * 65.11399 * 12 11 10 14 14 H 1.08000 * 119.99610 * 266.10564 * 13 12 11 15 15 C 1.37878 * 120.00275 * 86.10962 * 13 12 11 16 16 N 1.31521 * 119.99544 * 353.69988 * 15 13 12 17 17 Si 1.86797 * 120.00135 * 173.70166 * 15 13 12 18 18 H 1.48500 * 109.47185 * 89.99759 * 17 15 13 19 19 H 1.48497 * 109.46898 * 209.99898 * 17 15 13 20 20 H 1.48503 * 109.46942 * 329.99819 * 17 15 13 21 21 C 1.52999 * 117.49550 * 279.43958 * 12 11 10 22 22 C 1.52998 * 117.49687 * 210.78221 * 12 11 10 23 23 C 1.39693 * 119.81622 * 0.27408 * 7 6 5 24 24 C 1.37786 * 119.90628 * 359.46977 * 23 7 6 25 25 H 1.08998 * 109.47551 * 59.99615 * 1 2 3 26 26 H 1.09007 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47136 * 299.99760 * 1 2 3 28 28 H 1.09009 * 109.46813 * 240.00442 * 2 1 3 29 29 H 1.08995 * 109.47064 * 120.00287 * 2 1 3 30 30 H 1.07999 * 119.96019 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.04638 * 179.97438 * 6 5 4 32 32 H 1.08000 * 120.00630 * 359.97438 * 8 7 6 33 33 H 1.09004 * 109.47066 * 300.00931 * 11 10 9 34 34 H 1.08999 * 109.46533 * 59.99926 * 11 10 9 35 35 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 36 36 H 1.08997 * 117.50180 * 0.02562 * 21 12 11 37 37 H 1.09006 * 117.49525 * 145.02014 * 21 12 11 38 38 H 1.08995 * 117.50150 * 214.98008 * 22 12 11 39 39 H 1.09003 * 117.50225 * 359.97438 * 22 12 11 40 40 H 1.08004 * 120.04566 * 179.69895 * 23 7 6 41 41 H 1.07995 * 119.95260 * 180.25083 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5252 -0.0005 5 6 3.8815 2.8098 -0.0011 6 6 5.2469 2.9948 -0.0022 7 6 6.0997 1.8883 -0.0033 8 6 7.5622 2.0816 -0.0039 9 7 8.3504 1.0554 -0.0053 10 8 9.7542 1.2410 -0.0065 11 6 10.5016 0.0229 -0.0075 12 6 11.9978 0.3426 -0.0080 13 6 12.5144 1.0372 1.2255 14 1 12.5810 2.1148 1.2505 15 6 12.9023 0.2970 2.3222 16 7 12.7065 -1.0035 2.3404 17 14 13.7056 1.1411 3.7822 18 1 12.6590 1.5624 4.7478 19 1 14.6409 0.1979 4.4461 20 1 14.4555 2.3340 3.3131 21 6 12.6414 0.7085 -1.3469 22 6 12.9318 -0.6497 -0.7035 23 6 5.5636 0.5983 -0.0090 24 6 4.1971 0.4221 -0.0026 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2216 3.6647 -0.0015 31 1 5.6573 3.9938 -0.0031 32 1 7.9751 3.0796 -0.0039 33 1 10.2542 -0.5558 0.8825 34 1 10.2528 -0.5551 -0.8974 35 1 12.9790 -1.5242 3.1120 36 1 11.9989 0.7220 -2.2272 37 1 13.4389 1.4516 -1.3355 38 1 13.9202 -0.7998 -0.2692 39 1 12.4805 -1.5305 -1.1604 40 1 6.2195 -0.2598 -0.0148 41 1 3.7819 -0.5748 -0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853641109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = 21.684393 kcal Electronic energy + Delta-G solvation = -21372.235173 eV Core-core repulsion = 18027.330997 eV Total energy + Delta-G solvation = -3344.904176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29207 -37.98731 -37.19821 -35.74921 -33.36817 -31.99229 -31.88747 -31.13243 -29.15129 -26.12377 -24.98225 -24.26307 -23.40394 -21.80829 -21.10618 -20.10682 -19.15126 -18.46704 -16.92150 -16.39234 -16.22703 -15.77730 -15.44472 -14.72504 -14.59839 -14.24981 -14.02075 -13.72289 -13.68014 -13.51036 -13.15567 -12.88585 -12.65170 -12.42150 -12.03840 -11.93822 -11.59174 -11.40163 -10.96736 -10.95958 -10.90269 -10.72974 -10.47152 -10.22344 -9.73222 -9.32061 -9.25261 -9.14161 -8.72209 -8.42275 -8.16638 -7.88081 -6.03846 -4.08201 0.91890 1.26585 2.66395 2.92520 3.25653 3.31466 3.37022 3.41042 3.83169 4.41785 4.54934 4.56930 4.70218 4.79614 4.89250 4.92906 5.09831 5.23388 5.26260 5.29027 5.38227 5.41450 5.56550 5.65484 5.71372 5.94004 6.12265 6.15812 6.22678 6.34759 6.41409 6.45167 6.57331 6.60173 6.71803 6.77872 7.07265 7.17863 7.20030 7.43141 7.51485 7.89344 8.13732 8.44269 8.92644 9.56914 11.05614 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002652 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.992290 B =10555.998861 C =10785.829302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.317 6.317 4 C 0.135 3.865 5 C -0.157 4.157 6 C -0.053 4.053 7 C -0.081 4.081 8 C 0.120 3.880 9 N -0.338 5.338 10 O -0.208 6.208 11 C 0.119 3.881 12 C 0.042 3.958 13 C -0.488 4.488 14 H 0.061 0.939 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.207 4.207 22 C -0.144 4.144 23 C -0.043 4.043 24 C -0.213 4.213 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.137 0.863 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 2.739 -5.303 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.231 6.231 4 C 0.089 3.911 5 C -0.175 4.175 6 C -0.074 4.074 7 C -0.082 4.082 8 C -0.090 4.090 9 N -0.079 5.079 10 O -0.228 6.228 11 C 0.042 3.958 12 C 0.040 3.960 13 C -0.526 4.526 14 H 0.079 0.921 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.245 4.245 22 C -0.181 4.181 23 C -0.063 4.063 24 C -0.232 4.232 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.154 0.846 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.219 1.904 -5.184 21.926 hybrid contribution 0.745 0.631 0.877 1.312 sum -20.474 2.534 -4.307 21.075 Atomic orbital electron populations 1.21777 0.92754 1.02881 1.03487 1.22807 0.95828 0.81967 1.01662 1.86031 1.19216 1.29400 1.88437 1.19149 0.82113 0.94237 0.95577 1.20279 0.94915 0.94736 1.07590 1.21029 0.91820 0.98464 0.96038 1.18415 0.90223 0.93524 1.06034 1.23919 0.91428 0.96627 0.96982 1.76167 0.93267 1.28855 1.09578 1.90002 1.07200 1.32846 1.92712 1.22289 0.90514 0.84197 0.98754 1.18769 0.86973 0.99187 0.91084 1.20385 1.42515 0.92747 0.96909 0.92078 1.24999 0.95380 0.94870 0.98165 1.70008 1.46302 1.05456 1.30088 0.86599 0.79410 0.79444 0.82620 1.20642 1.21148 1.19770 1.23011 1.04323 0.99566 0.97572 1.22518 1.01460 0.90951 1.03207 1.21245 0.94133 0.97302 0.93604 1.21198 0.94170 0.98087 1.09731 0.91542 0.90357 0.91516 0.91883 0.91846 0.84902 0.84555 0.86410 0.91964 0.95793 0.93005 0.91587 0.90211 0.89504 0.91690 0.84558 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.28 10.13 -19.13 -0.19 -3.48 16 4 C 0.14 1.52 6.69 -39.08 -0.26 1.26 16 5 C -0.16 -1.65 9.97 -39.49 -0.39 -2.04 16 6 C -0.05 -0.58 9.78 -39.20 -0.38 -0.96 16 7 C -0.08 -1.09 5.87 -105.02 -0.62 -1.71 16 8 C 0.12 1.95 10.90 -14.79 -0.16 1.79 16 9 N -0.34 -6.82 10.46 32.11 0.34 -6.48 16 10 O -0.21 -4.97 11.29 -11.47 -0.13 -5.10 16 11 C 0.12 2.93 6.22 37.16 0.23 3.16 16 12 C 0.04 1.07 1.62 -155.66 -0.25 0.82 16 13 C -0.49 -13.74 8.77 -34.44 -0.30 -14.05 16 14 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 15 C 0.07 1.92 5.38 -17.82 -0.10 1.83 16 16 N -0.88 -25.28 12.88 55.43 0.71 -24.57 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.21 -4.70 9.96 -26.69 -0.27 -4.97 16 22 C -0.14 -3.42 9.37 -26.69 -0.25 -3.67 16 23 C -0.04 -0.57 9.57 -39.20 -0.38 -0.94 16 24 C -0.21 -2.42 9.02 -39.50 -0.36 -2.77 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 7.65 -51.92 -0.40 0.02 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.14 1.91 7.55 -52.48 -0.40 1.52 16 41 H 0.13 1.18 6.28 -52.49 -0.33 0.85 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -31.33 357.14 -7.95 -39.28 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.14 Total: 0.56 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.90 Total: -22.11 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 1.05 Total: -31.05 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.32 Total: -8.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.33 -7.95 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853641109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.964 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds