Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00029 * 2 1 4 4 C 1.34773 * 120.00019 * 179.97438 * 2 1 3 5 5 O 1.21586 * 120.00144 * 3.53568 * 4 2 1 6 6 C 1.47605 * 119.99915 * 183.53754 * 4 2 1 7 7 C 1.39732 * 120.08793 * 328.73842 * 6 4 2 8 8 C 1.37704 * 119.91068 * 179.78971 * 7 6 4 9 9 C 1.38994 * 120.08601 * 0.48913 * 8 7 6 10 10 O 1.35719 * 119.91167 * 179.76151 * 9 8 7 11 11 C 1.42901 * 116.99865 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.47284 * 179.97438 * 11 10 9 13 13 C 1.50701 * 115.54735 * 59.17065 * 12 11 10 14 14 H 1.08004 * 120.00269 * 264.80256 * 13 12 11 15 15 C 1.37874 * 120.00058 * 84.80101 * 13 12 11 16 16 N 1.31516 * 119.99964 * 2.00725 * 15 13 12 17 17 Si 1.86805 * 120.00218 * 182.00459 * 15 13 12 18 18 H 1.48502 * 109.46812 * 60.00356 * 17 15 13 19 19 H 1.48497 * 109.47266 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47258 * 300.00097 * 17 15 13 21 21 C 1.53001 * 117.50222 * 273.50452 * 12 11 10 22 22 C 1.52990 * 117.50169 * 204.84244 * 12 11 10 23 23 C 1.38991 * 120.18114 * 359.74283 * 9 8 7 24 24 C 1.37706 * 120.08780 * 0.02562 * 23 9 8 25 25 H 1.08997 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46939 * 300.00553 * 1 2 3 27 27 H 1.09000 * 109.46640 * 60.00091 * 1 2 3 28 28 H 1.09003 * 109.47051 * 274.58988 * 3 2 1 29 29 H 1.09003 * 109.47535 * 34.58791 * 3 2 1 30 30 H 1.09000 * 109.47639 * 154.58754 * 3 2 1 31 31 H 1.07995 * 120.04396 * 0.02562 * 7 6 4 32 32 H 1.08005 * 119.95669 * 180.23621 * 8 7 6 33 33 H 1.08995 * 109.47106 * 299.99900 * 11 10 9 34 34 H 1.09000 * 109.47176 * 59.99510 * 11 10 9 35 35 H 0.96998 * 119.99957 * 179.97438 * 16 15 13 36 36 H 1.09002 * 117.49499 * 359.97438 * 21 12 11 37 37 H 1.08991 * 117.50154 * 145.01973 * 21 12 11 38 38 H 1.09004 * 117.50020 * 214.98100 * 22 12 11 39 39 H 1.08998 * 117.49998 * 359.97438 * 22 12 11 40 40 H 1.08002 * 119.96096 * 179.97438 * 23 9 8 41 41 H 1.07999 * 120.04913 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5327 -2.2192 -0.0639 6 6 3.6128 -1.1683 0.0794 7 6 4.3450 -0.1168 -0.4780 8 6 5.7198 -0.1194 -0.3985 9 6 6.3796 -1.1712 0.2262 10 8 7.7348 -1.1726 0.2982 11 6 8.4168 -0.0627 -0.2891 12 6 9.9261 -0.2386 -0.1101 13 6 10.5115 -1.4870 -0.7184 14 1 10.6502 -2.3696 -0.1115 15 6 10.8699 -1.5026 -2.0496 16 7 10.7378 -0.4161 -2.7789 17 14 11.5433 -3.0667 -2.8175 18 1 10.5317 -4.1481 -2.7057 19 1 11.8512 -2.8224 -4.2495 20 1 12.7827 -3.4729 -2.1075 21 6 10.5474 0.2711 1.1918 22 6 10.7905 1.0236 -0.1188 23 6 5.6552 -2.2215 0.7776 24 6 4.2800 -2.2240 0.7065 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 2.3080 1.6245 -1.0244 29 1 1.6466 2.0065 0.5834 30 1 3.1831 1.1194 0.4410 31 1 3.8332 0.6988 -0.9671 32 1 6.2862 0.6949 -0.8257 33 1 8.1801 -0.0118 -1.3518 34 1 8.0985 0.8588 0.1985 35 1 10.9904 -0.4269 -3.7153 36 1 9.8809 0.7322 1.9207 37 1 11.3797 -0.2962 1.6082 38 1 11.7828 0.9511 -0.5641 39 1 10.2840 1.9795 -0.2524 40 1 6.1716 -3.0372 1.2618 41 1 3.7178 -3.0406 1.1348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853652504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -0.817380 kcal Electronic energy + Delta-G solvation = -22460.161137 eV Core-core repulsion = 19114.281211 eV Total energy + Delta-G solvation = -3345.879926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49496 -39.24504 -37.18006 -35.88369 -35.69400 -31.99599 -31.27753 -30.30512 -28.12271 -26.95989 -26.17705 -25.32735 -22.65566 -22.29673 -21.17901 -19.87517 -19.20035 -17.68068 -17.28389 -16.65709 -16.16053 -15.85324 -15.11320 -15.00675 -14.63922 -14.53558 -14.25419 -13.90370 -13.45928 -13.26226 -13.03833 -12.85756 -12.69210 -12.34905 -12.26817 -12.12730 -11.78351 -11.59954 -11.06992 -10.95333 -10.62284 -10.56171 -10.42923 -10.23345 -9.89341 -9.60451 -9.00813 -8.97110 -8.82160 -8.49491 -8.26555 -7.86046 -6.10816 -4.16316 1.15935 1.48045 2.80225 2.91350 3.29364 3.33640 3.37565 3.76290 3.94419 4.37177 4.49869 4.72120 4.98103 5.04165 5.05759 5.15982 5.19120 5.25129 5.31663 5.39065 5.46649 5.57432 5.59316 5.77671 5.81153 6.05769 6.10161 6.16487 6.23128 6.30018 6.38203 6.47776 6.54679 6.58425 6.68118 6.91795 6.96662 7.18084 7.24958 7.40933 7.82683 7.99665 8.09065 8.34401 8.85235 9.50093 10.98099 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.003556 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.021660 B = 7871.726835 C = 8305.484410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.621 5.621 3 C 0.061 3.939 4 C 0.568 3.432 5 O -0.545 6.545 6 C -0.200 4.200 7 C -0.058 4.058 8 C -0.227 4.227 9 C 0.179 3.821 10 O -0.285 6.285 11 C 0.102 3.898 12 C 0.037 3.963 13 C -0.487 4.487 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.207 4.207 22 C -0.141 4.141 23 C -0.171 4.171 24 C -0.021 4.021 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.039 5.612 5.377 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.355 5.355 3 C -0.082 4.082 4 C 0.359 3.641 5 O -0.423 6.423 6 C -0.203 4.203 7 C -0.076 4.076 8 C -0.245 4.245 9 C 0.130 3.870 10 O -0.196 6.196 11 C 0.028 3.972 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.244 4.244 22 C -0.178 4.178 23 C -0.190 4.190 24 C -0.040 4.040 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.185 5.009 5.225 16.821 hybrid contribution 0.323 -0.342 -0.767 0.900 sum -14.862 4.667 4.458 16.203 Atomic orbital electron populations 1.21661 0.79193 1.04207 1.01089 1.47574 1.07008 1.06427 1.74502 1.22466 0.98836 0.85078 1.01789 1.18391 0.87460 0.83031 0.75205 1.90743 1.70080 1.31026 1.50473 1.19488 0.91969 0.99094 1.09779 1.21570 0.93608 0.96470 0.95956 1.21319 0.95026 1.01176 1.07011 1.19582 0.84497 0.92633 0.90307 1.86213 1.13605 1.46784 1.72989 1.22690 0.93522 0.84085 0.96934 1.18705 0.86958 0.95464 0.95199 1.20342 1.41228 0.96377 0.94555 0.91990 1.24986 0.95071 0.96169 0.97128 1.69973 1.47525 1.27047 1.07588 0.86645 0.79558 0.83705 0.78092 1.20018 1.21261 1.20152 1.23037 1.03893 1.06066 0.91425 1.22518 1.01931 0.94503 0.98898 1.20418 0.92958 0.99564 1.06057 1.20882 0.93049 0.95680 0.94349 0.89482 0.92309 0.92351 0.92111 0.91396 0.88638 0.84358 0.84684 0.91367 0.94737 0.92899 0.91569 0.90091 0.89230 0.91801 0.84553 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.71 59.85 0.64 1.35 16 2 N -0.62 -6.87 3.27 -190.73 -0.62 -7.49 16 3 C 0.06 0.48 8.83 59.85 0.53 1.01 16 4 C 0.57 8.23 7.44 -12.44 -0.09 8.14 16 5 O -0.54 -9.53 16.06 5.29 0.08 -9.44 16 6 C -0.20 -2.88 5.48 -104.96 -0.57 -3.46 16 7 C -0.06 -0.76 7.43 -39.22 -0.29 -1.05 16 8 C -0.23 -3.48 9.01 -39.50 -0.36 -3.84 16 9 C 0.18 3.17 6.70 -39.02 -0.26 2.91 16 10 O -0.29 -5.99 9.95 -18.86 -0.19 -6.18 16 11 C 0.10 2.17 4.58 37.16 0.17 2.34 16 12 C 0.04 0.88 1.69 -155.67 -0.26 0.62 16 13 C -0.49 -13.04 8.66 -34.44 -0.30 -13.34 16 14 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 16 N -0.88 -24.13 12.72 55.43 0.71 -23.43 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.21 -4.35 9.95 -26.69 -0.27 -4.61 16 22 C -0.14 -3.12 9.24 -26.70 -0.25 -3.37 16 23 C -0.17 -2.73 9.97 -39.50 -0.39 -3.12 16 24 C -0.02 -0.31 9.59 -39.21 -0.38 -0.68 16 25 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 7.41 -51.93 -0.38 0.02 16 29 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.10 0.83 4.75 -51.93 -0.25 0.58 16 31 H 0.14 1.42 4.75 -52.49 -0.25 1.17 16 32 H 0.14 1.99 6.28 -52.48 -0.33 1.66 16 33 H 0.07 1.55 7.65 -51.93 -0.40 1.15 16 34 H 0.03 0.64 7.62 -51.93 -0.40 0.25 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.13 1.80 7.94 -52.49 -0.42 1.38 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -30.60 341.99 -7.77 -38.37 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.70 Total: 2.42 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.18 Total: -15.35 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.08 Total: -30.92 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.10 Total: -15.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.60 -7.77 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.552 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds