Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00029 * 2 1 4 4 C 1.34773 * 120.00019 * 179.97438 * 2 1 3 5 5 O 1.21586 * 120.00144 * 3.53568 * 4 2 1 6 6 C 1.47605 * 119.99915 * 183.53754 * 4 2 1 7 7 C 1.39732 * 120.08793 * 328.73842 * 6 4 2 8 8 C 1.37704 * 119.91068 * 179.78971 * 7 6 4 9 9 C 1.38994 * 120.08601 * 0.48913 * 8 7 6 10 10 O 1.35719 * 119.91167 * 179.76151 * 9 8 7 11 11 C 1.42901 * 116.99865 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.47284 * 179.97438 * 11 10 9 13 13 C 1.50701 * 115.54735 * 59.17065 * 12 11 10 14 14 H 1.08004 * 120.00269 * 264.80256 * 13 12 11 15 15 C 1.37874 * 120.00058 * 84.80101 * 13 12 11 16 16 N 1.31516 * 119.99964 * 2.00725 * 15 13 12 17 17 Si 1.86805 * 120.00218 * 182.00459 * 15 13 12 18 18 H 1.48502 * 109.46812 * 60.00356 * 17 15 13 19 19 H 1.48497 * 109.47266 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47258 * 300.00097 * 17 15 13 21 21 C 1.53001 * 117.50222 * 273.50452 * 12 11 10 22 22 C 1.52990 * 117.50169 * 204.84244 * 12 11 10 23 23 C 1.38991 * 120.18114 * 359.74283 * 9 8 7 24 24 C 1.37706 * 120.08780 * 0.02562 * 23 9 8 25 25 H 1.08997 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46939 * 300.00553 * 1 2 3 27 27 H 1.09000 * 109.46640 * 60.00091 * 1 2 3 28 28 H 1.09003 * 109.47051 * 274.58988 * 3 2 1 29 29 H 1.09003 * 109.47535 * 34.58791 * 3 2 1 30 30 H 1.09000 * 109.47639 * 154.58754 * 3 2 1 31 31 H 1.07995 * 120.04396 * 0.02562 * 7 6 4 32 32 H 1.08005 * 119.95669 * 180.23621 * 8 7 6 33 33 H 1.08995 * 109.47106 * 299.99900 * 11 10 9 34 34 H 1.09000 * 109.47176 * 59.99510 * 11 10 9 35 35 H 0.96998 * 119.99957 * 179.97438 * 16 15 13 36 36 H 1.09002 * 117.49499 * 359.97438 * 21 12 11 37 37 H 1.08991 * 117.50154 * 145.01973 * 21 12 11 38 38 H 1.09004 * 117.50020 * 214.98100 * 22 12 11 39 39 H 1.08998 * 117.49998 * 359.97438 * 22 12 11 40 40 H 1.08002 * 119.96096 * 179.97438 * 23 9 8 41 41 H 1.07999 * 120.04913 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5327 -2.2192 -0.0639 6 6 3.6128 -1.1683 0.0794 7 6 4.3450 -0.1168 -0.4780 8 6 5.7198 -0.1194 -0.3985 9 6 6.3796 -1.1712 0.2262 10 8 7.7348 -1.1726 0.2982 11 6 8.4168 -0.0627 -0.2891 12 6 9.9261 -0.2386 -0.1101 13 6 10.5115 -1.4870 -0.7184 14 1 10.6502 -2.3696 -0.1115 15 6 10.8699 -1.5026 -2.0496 16 7 10.7378 -0.4161 -2.7789 17 14 11.5433 -3.0667 -2.8175 18 1 10.5317 -4.1481 -2.7057 19 1 11.8512 -2.8224 -4.2495 20 1 12.7827 -3.4729 -2.1075 21 6 10.5474 0.2711 1.1918 22 6 10.7905 1.0236 -0.1188 23 6 5.6552 -2.2215 0.7776 24 6 4.2800 -2.2240 0.7065 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 2.3080 1.6245 -1.0244 29 1 1.6466 2.0065 0.5834 30 1 3.1831 1.1194 0.4410 31 1 3.8332 0.6988 -0.9671 32 1 6.2862 0.6949 -0.8257 33 1 8.1801 -0.0118 -1.3518 34 1 8.0985 0.8588 0.1985 35 1 10.9904 -0.4269 -3.7153 36 1 9.8809 0.7322 1.9207 37 1 11.3797 -0.2962 1.6082 38 1 11.7828 0.9511 -0.5641 39 1 10.2840 1.9795 -0.2524 40 1 6.1716 -3.0372 1.2618 41 1 3.7178 -3.0406 1.1348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853652504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -17.961730 kcal Electronic energy + Delta-G solvation = -22460.904572 eV Core-core repulsion = 19114.281211 eV Total energy + Delta-G solvation = -3346.623361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62659 -40.53976 -38.64371 -37.40139 -36.69366 -34.00424 -32.41360 -31.48903 -29.06521 -28.30996 -27.39953 -27.04281 -23.81343 -23.51705 -22.88357 -21.16510 -20.74615 -19.03054 -18.32424 -18.24667 -17.39035 -16.94473 -16.76630 -16.39838 -16.23315 -15.74489 -15.48065 -15.19346 -14.76171 -14.51423 -14.28293 -13.95276 -13.71490 -13.59852 -13.32890 -13.30137 -13.13096 -12.91379 -12.85557 -12.74063 -12.40596 -12.10470 -11.86983 -11.76020 -11.36786 -11.01782 -10.86990 -10.44501 -10.07448 -10.03538 -9.74227 -9.15675 -8.13479 -6.23217 -0.03883 0.31387 1.40400 1.42137 1.48689 1.70409 2.02175 2.31877 2.42954 2.75649 3.15950 3.50758 3.52974 3.74850 3.87893 4.12924 4.20556 4.28984 4.38672 4.42194 4.44974 4.50093 4.50675 4.56667 4.68579 4.72996 4.85966 4.89466 4.92502 4.96550 5.00358 5.13280 5.22842 5.26608 5.32766 5.47989 5.53287 5.63666 5.71451 5.75827 6.24432 6.36305 6.60361 6.80077 7.05349 7.44706 8.94235 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.003556 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.021660 B = 7871.726835 C = 8305.484410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.052 3.948 4 C 0.561 3.439 5 O -0.585 6.585 6 C -0.200 4.200 7 C -0.043 4.043 8 C -0.227 4.227 9 C 0.147 3.853 10 O -0.312 6.312 11 C 0.117 3.883 12 C 0.003 3.997 13 C -0.505 4.505 14 H 0.045 0.955 15 C 0.029 3.971 16 N -0.904 5.904 17 Si 0.943 3.057 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.272 1.272 21 C -0.187 4.187 22 C -0.138 4.138 23 C -0.177 4.177 24 C -0.024 4.024 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.142 0.858 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.671 7.269 5.568 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C -0.090 4.090 4 C 0.352 3.648 5 O -0.467 6.467 6 C -0.203 4.203 7 C -0.060 4.060 8 C -0.246 4.246 9 C 0.100 3.900 10 O -0.225 6.225 11 C 0.042 3.958 12 C 0.002 3.998 13 C -0.543 4.543 14 H 0.063 0.937 15 C -0.172 4.172 16 N -0.542 5.542 17 Si 0.769 3.231 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.224 4.224 22 C -0.176 4.176 23 C -0.195 4.195 24 C -0.043 4.043 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.156 0.844 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.830 6.707 5.426 18.912 hybrid contribution 0.692 -0.822 -0.774 1.325 sum -16.137 5.885 4.652 17.796 Atomic orbital electron populations 1.21848 0.77750 1.03585 1.03363 1.47730 1.08117 1.06410 1.72480 1.22699 0.98625 0.84086 1.03548 1.18419 0.87349 0.83625 0.75415 1.90726 1.70612 1.32646 1.52708 1.19707 0.92490 0.99079 1.09045 1.21885 0.92636 0.96765 0.94760 1.21448 0.95921 1.00664 1.06552 1.19863 0.83408 0.94336 0.92423 1.86143 1.15473 1.47086 1.73762 1.22349 0.92090 0.85398 0.95938 1.18859 0.88611 0.95000 0.97293 1.20580 1.41527 0.97254 0.94929 0.93681 1.25562 0.95534 0.98512 0.97546 1.70044 1.48321 1.28198 1.07603 0.85850 0.78924 0.80746 0.77568 1.20384 1.20643 1.19703 1.23040 1.03511 1.04797 0.91051 1.22430 1.00621 0.94985 0.99530 1.20503 0.93404 0.99437 1.06190 1.21009 0.92581 0.96278 0.94438 0.91592 0.89899 0.90123 0.90101 0.88578 0.89333 0.80880 0.84019 0.93672 0.91998 0.92987 0.88782 0.90590 0.91641 0.89660 0.84358 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.71 127.77 1.37 2.49 16 2 N -0.62 -11.82 3.27 -875.62 -2.87 -14.69 16 3 C 0.05 0.61 8.83 127.77 1.13 1.73 16 4 C 0.56 15.41 7.44 86.72 0.65 16.06 16 5 O -0.58 -20.25 16.06 -3.99 -0.06 -20.32 16 6 C -0.20 -5.48 5.48 -20.08 -0.11 -5.59 16 7 C -0.04 -1.03 7.43 22.50 0.17 -0.86 16 8 C -0.23 -6.68 9.01 22.32 0.20 -6.48 16 9 C 0.15 5.21 6.70 22.63 0.15 5.36 16 10 O -0.31 -13.25 9.95 -90.41 -0.90 -14.15 16 11 C 0.12 4.94 4.58 71.98 0.33 5.27 16 12 C 0.00 0.13 1.69 -52.93 -0.09 0.04 16 13 C -0.51 -27.55 8.66 25.60 0.22 -27.33 16 14 H 0.04 2.53 7.81 -2.91 -0.02 2.50 16 15 C 0.03 1.57 5.43 84.65 0.46 2.03 16 16 N -0.90 -49.84 12.72 21.45 0.27 -49.57 16 17 Si 0.94 43.55 29.54 68.60 2.03 45.57 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C -0.19 -7.65 9.95 30.62 0.30 -7.35 16 22 C -0.14 -6.04 9.24 30.61 0.28 -5.76 16 23 C -0.18 -5.66 9.97 22.32 0.22 -5.43 16 24 C -0.02 -0.71 9.59 22.51 0.22 -0.49 16 25 H 0.07 1.29 6.90 -2.39 -0.02 1.27 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.69 7.41 -2.39 -0.02 0.68 16 29 H 0.10 0.66 8.11 -2.39 -0.02 0.64 16 30 H 0.09 1.20 4.75 -2.39 -0.01 1.19 16 31 H 0.17 2.89 4.75 -2.91 -0.01 2.88 16 32 H 0.14 3.94 6.28 -2.91 -0.02 3.92 16 33 H 0.05 2.07 7.65 -2.39 -0.02 2.05 16 34 H 0.06 2.21 7.62 -2.39 -0.02 2.19 16 35 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.14 3.81 7.94 -2.91 -0.02 3.78 16 Total: -1.00 -67.23 341.99 5.00 -62.23 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.03 Total: 17.22 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 5.50 Total: -26.30 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -2.59 Total: -64.25 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.96 Total: -34.47 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.23 5.00 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853652504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.267 kcal (2) G-P(sol) polarization free energy of solvation -67.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds