Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47191 * 2 1 4 4 C 1.35914 * 117.00160 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.96841 * 359.72823 * 4 3 2 6 6 C 1.38296 * 120.29821 * 179.76407 * 5 4 3 7 7 C 1.37932 * 120.23310 * 0.51210 * 6 5 4 8 8 C 1.39876 * 119.93010 * 359.73963 * 7 6 5 9 9 C 1.47160 * 120.14166 * 180.02562 * 8 7 6 10 10 C 1.34970 * 119.99836 * 132.08793 * 9 8 7 11 11 C 1.46227 * 120.00165 * 348.04293 * 10 9 8 12 12 O 1.21764 * 120.00220 * 354.56399 * 11 10 9 13 13 N 1.34780 * 120.00429 * 174.56204 * 11 10 9 14 14 C 1.36712 * 120.00365 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00243 * 323.52324 * 14 13 11 16 16 C 1.39132 * 119.99900 * 143.51817 * 14 13 11 17 17 N 1.31315 * 119.99783 * 156.81970 * 16 14 13 18 18 Si 1.86798 * 119.99779 * 336.82579 * 16 14 13 19 19 H 1.48496 * 109.47388 * 90.95774 * 18 16 14 20 20 H 1.48510 * 109.46828 * 210.95568 * 18 16 14 21 21 H 1.48501 * 109.47099 * 330.95230 * 18 16 14 22 22 C 1.46502 * 119.99811 * 0.02562 * 13 11 10 23 23 C 1.52997 * 109.47287 * 83.73481 * 22 13 11 24 24 C 1.38370 * 119.96891 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47449 * 300.00031 * 1 2 3 27 27 H 1.09001 * 109.47202 * 60.00010 * 1 2 3 28 28 H 1.09003 * 109.47449 * 239.99969 * 2 1 3 29 29 H 1.09001 * 109.47202 * 119.99990 * 2 1 3 30 30 H 1.08001 * 119.85082 * 0.02562 * 5 4 3 31 31 H 1.07994 * 119.88550 * 180.25378 * 6 5 4 32 32 H 1.07996 * 120.03654 * 179.76850 * 7 6 5 33 33 H 1.08001 * 119.99770 * 312.08322 * 9 8 7 34 34 H 1.08002 * 120.00162 * 168.03859 * 10 9 8 35 35 H 0.97007 * 119.99986 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47105 * 203.73895 * 22 13 11 37 37 H 1.09008 * 109.46710 * 323.73479 * 22 13 11 38 38 H 1.08995 * 109.47305 * 59.99934 * 23 22 13 39 39 H 1.08999 * 109.47273 * 180.02562 * 23 22 13 40 40 H 1.09004 * 109.47093 * 300.00399 * 23 22 13 41 41 H 1.08000 * 120.11679 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4233 0.0068 6 6 5.5713 0.5966 0.0024 7 6 6.1110 1.8660 0.0026 8 6 5.2686 2.9826 0.0015 9 6 5.8394 4.3389 0.0011 10 6 5.3794 5.2644 -0.8671 11 6 4.5112 4.8620 -1.9727 12 8 4.2831 3.6822 -2.1695 13 7 3.9633 5.7969 -2.7741 14 6 3.1520 5.4206 -3.8081 15 1 3.3687 4.5209 -4.3648 16 6 2.0469 6.1967 -4.1432 17 7 1.5408 6.1307 -5.3531 18 14 1.2834 7.3328 -2.8721 19 1 1.9155 8.6734 -2.9631 20 1 -0.1742 7.4543 -3.1288 21 1 1.5019 6.7737 -1.5138 22 6 4.2381 7.2164 -2.5378 23 6 5.5637 7.5964 -3.2004 24 6 3.8819 2.8043 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7834 -0.5734 0.0108 31 1 6.2225 -0.2649 0.0032 32 1 7.1830 1.9976 0.0029 33 1 6.6263 4.5938 0.6955 34 1 5.6526 6.3021 -0.7452 35 1 0.7701 6.6715 -5.5867 36 1 3.4341 7.8176 -2.9624 37 1 4.3019 7.4004 -1.4653 38 1 5.4999 7.4124 -4.2728 39 1 5.7684 8.6525 -3.0242 40 1 6.3677 6.9951 -2.7758 41 1 3.2252 3.6618 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858754827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -7.540831 kcal Electronic energy + Delta-G solvation = -23236.966098 eV Core-core repulsion = 19890.794621 eV Total energy + Delta-G solvation = -3346.171477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77278 -38.82373 -37.17565 -35.18288 -33.09090 -32.24622 -31.77864 -29.70803 -29.42769 -28.91404 -25.54830 -23.81742 -22.94523 -22.47942 -21.73486 -20.45563 -18.41246 -17.27379 -16.85526 -16.32136 -15.82246 -15.74009 -15.50473 -15.33260 -14.08834 -14.02121 -13.58268 -13.36981 -13.15492 -13.11564 -12.85668 -12.56645 -12.52328 -12.35204 -12.27161 -11.86751 -11.65778 -11.53412 -11.33176 -11.15917 -10.95431 -10.73331 -10.55097 -10.39502 -10.08365 -9.86253 -9.35342 -9.02070 -8.60895 -7.81302 -7.62452 -7.50286 -6.42919 -3.89866 1.28098 2.00857 2.34679 3.02835 3.22896 3.28398 3.55170 4.13355 4.29046 4.33265 4.52067 5.01953 5.03435 5.04864 5.14472 5.29152 5.30043 5.43490 5.47107 5.55736 5.59237 5.68821 5.84662 5.87220 5.91619 5.92780 5.96938 6.02871 6.13066 6.24396 6.42564 6.47352 6.59628 6.66513 6.77207 6.80218 6.86787 7.07456 7.25967 7.56420 7.88581 8.31906 8.56013 9.01164 9.33839 9.87365 10.69044 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.006008 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.940755 B = 4659.256402 C = 6028.972733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.316 6.316 4 C 0.121 3.879 5 C -0.209 4.209 6 C -0.096 4.096 7 C -0.146 4.146 8 C -0.003 4.003 9 C -0.080 4.080 10 C -0.173 4.173 11 C 0.474 3.526 12 O -0.550 6.550 13 N -0.453 5.453 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.060 3.940 17 N -0.857 5.857 18 Si 0.874 3.126 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.080 3.920 23 C -0.162 4.162 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.274 0.726 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -4.802 12.391 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.230 6.230 4 C 0.077 3.923 5 C -0.228 4.228 6 C -0.115 4.115 7 C -0.165 4.165 8 C -0.004 4.004 9 C -0.101 4.101 10 C -0.194 4.194 11 C 0.265 3.735 12 O -0.432 6.432 13 N -0.173 5.173 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.147 4.147 17 N -0.493 5.493 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.187 1.187 22 C -0.044 4.044 23 C -0.220 4.220 24 C -0.089 4.089 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.569 -5.180 12.090 13.924 hybrid contribution -0.411 0.638 0.301 0.817 sum 4.158 -4.541 12.391 13.837 Atomic orbital electron populations 1.21764 0.93160 1.02350 1.03641 1.22665 0.95601 0.82716 1.00836 1.86096 1.19480 1.28383 1.89050 1.18717 0.81877 0.93995 0.97742 1.21097 0.94431 0.97289 1.10017 1.20592 0.94041 0.96779 1.00054 1.20972 0.98803 0.91870 1.04808 1.18521 0.92036 0.92785 0.97025 1.22083 0.97773 0.91825 0.98381 1.23472 1.00001 0.99131 0.96812 1.18149 0.85132 0.86594 0.83658 1.90780 1.63488 1.16537 1.72438 1.43730 1.42769 1.03555 1.27219 1.19039 1.05442 1.12036 1.06838 0.87658 1.25392 0.96284 0.97327 0.95678 1.69736 1.23259 1.39158 1.17123 0.87056 0.78839 0.80243 0.83730 1.20066 1.21329 1.18655 1.21933 0.98133 0.85198 0.99122 1.22145 0.97172 1.00041 1.02664 1.20310 0.93941 0.94499 1.00125 0.90773 0.91752 0.91287 0.92302 0.92650 0.86474 0.86617 0.86574 0.85413 0.85935 0.91522 0.90505 0.92095 0.91532 0.92737 0.92821 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.15 0.38 -1.36 16 2 C 0.06 0.78 5.46 37.15 0.20 0.99 16 3 O -0.32 -5.90 10.13 -19.47 -0.20 -6.10 16 4 C 0.12 2.33 6.68 -39.28 -0.26 2.07 16 5 C -0.21 -3.44 9.04 -39.31 -0.36 -3.80 16 6 C -0.10 -1.49 10.02 -39.67 -0.40 -1.88 16 7 C -0.15 -2.37 9.79 -39.08 -0.38 -2.75 16 8 C 0.00 -0.06 4.34 -105.07 -0.46 -0.52 16 9 C -0.08 -1.30 9.78 -37.12 -0.36 -1.66 16 10 C -0.17 -3.14 8.58 -37.54 -0.32 -3.46 16 11 C 0.47 11.22 6.76 -13.05 -0.09 11.13 16 12 O -0.55 -14.82 12.31 5.13 0.06 -14.76 16 13 N -0.45 -11.08 2.20 -116.46 -0.26 -11.33 16 14 C -0.31 -8.74 9.36 -15.04 -0.14 -8.88 16 15 H 0.11 3.41 7.88 -52.49 -0.41 2.99 16 16 C 0.06 1.66 5.26 -17.44 -0.09 1.57 16 17 N -0.86 -24.83 13.95 55.51 0.77 -24.06 16 18 Si 0.87 20.72 25.23 -169.99 -4.29 16.43 16 19 H -0.27 -5.95 6.47 56.52 0.37 -5.58 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.08 1.60 4.34 -4.04 -0.02 1.58 16 23 C -0.16 -2.75 10.02 37.16 0.37 -2.38 16 24 C -0.07 -1.43 6.72 -38.94 -0.26 -1.69 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.78 7.67 -51.93 -0.40 0.39 16 29 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 30 H 0.12 1.60 6.28 -52.49 -0.33 1.27 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.12 1.83 6.00 -52.49 -0.31 1.52 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.65 3.40 -51.93 -0.18 1.47 16 37 H 0.06 1.05 6.55 -51.92 -0.34 0.71 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 41 H 0.12 2.67 7.47 -52.49 -0.39 2.27 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -33.23 334.35 -6.74 -39.98 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.70 Total: 5.85 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.18 Total: -11.05 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.52 Total: -35.39 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.13 Total: -20.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.29 Total: 16.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.23 -6.74 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858754827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.434 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds