Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47191 * 2 1 4 4 C 1.35914 * 117.00160 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.96841 * 359.72823 * 4 3 2 6 6 C 1.38296 * 120.29821 * 179.76407 * 5 4 3 7 7 C 1.37932 * 120.23310 * 0.51210 * 6 5 4 8 8 C 1.39876 * 119.93010 * 359.73963 * 7 6 5 9 9 C 1.47160 * 120.14166 * 180.02562 * 8 7 6 10 10 C 1.34970 * 119.99836 * 132.08793 * 9 8 7 11 11 C 1.46227 * 120.00165 * 348.04293 * 10 9 8 12 12 O 1.21764 * 120.00220 * 354.56399 * 11 10 9 13 13 N 1.34780 * 120.00429 * 174.56204 * 11 10 9 14 14 C 1.36712 * 120.00365 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00243 * 323.52324 * 14 13 11 16 16 C 1.39132 * 119.99900 * 143.51817 * 14 13 11 17 17 N 1.31315 * 119.99783 * 156.81970 * 16 14 13 18 18 Si 1.86798 * 119.99779 * 336.82579 * 16 14 13 19 19 H 1.48496 * 109.47388 * 90.95774 * 18 16 14 20 20 H 1.48510 * 109.46828 * 210.95568 * 18 16 14 21 21 H 1.48501 * 109.47099 * 330.95230 * 18 16 14 22 22 C 1.46502 * 119.99811 * 0.02562 * 13 11 10 23 23 C 1.52997 * 109.47287 * 83.73481 * 22 13 11 24 24 C 1.38370 * 119.96891 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47449 * 300.00031 * 1 2 3 27 27 H 1.09001 * 109.47202 * 60.00010 * 1 2 3 28 28 H 1.09003 * 109.47449 * 239.99969 * 2 1 3 29 29 H 1.09001 * 109.47202 * 119.99990 * 2 1 3 30 30 H 1.08001 * 119.85082 * 0.02562 * 5 4 3 31 31 H 1.07994 * 119.88550 * 180.25378 * 6 5 4 32 32 H 1.07996 * 120.03654 * 179.76850 * 7 6 5 33 33 H 1.08001 * 119.99770 * 312.08322 * 9 8 7 34 34 H 1.08002 * 120.00162 * 168.03859 * 10 9 8 35 35 H 0.97007 * 119.99986 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47105 * 203.73895 * 22 13 11 37 37 H 1.09008 * 109.46710 * 323.73479 * 22 13 11 38 38 H 1.08995 * 109.47305 * 59.99934 * 23 22 13 39 39 H 1.08999 * 109.47273 * 180.02562 * 23 22 13 40 40 H 1.09004 * 109.47093 * 300.00399 * 23 22 13 41 41 H 1.08000 * 120.11679 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4233 0.0068 6 6 5.5713 0.5966 0.0024 7 6 6.1110 1.8660 0.0026 8 6 5.2686 2.9826 0.0015 9 6 5.8394 4.3389 0.0011 10 6 5.3794 5.2644 -0.8671 11 6 4.5112 4.8620 -1.9727 12 8 4.2831 3.6822 -2.1695 13 7 3.9633 5.7969 -2.7741 14 6 3.1520 5.4206 -3.8081 15 1 3.3687 4.5209 -4.3648 16 6 2.0469 6.1967 -4.1432 17 7 1.5408 6.1307 -5.3531 18 14 1.2834 7.3328 -2.8721 19 1 1.9155 8.6734 -2.9631 20 1 -0.1742 7.4543 -3.1288 21 1 1.5019 6.7737 -1.5138 22 6 4.2381 7.2164 -2.5378 23 6 5.5637 7.5964 -3.2004 24 6 3.8819 2.8043 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7834 -0.5734 0.0108 31 1 6.2225 -0.2649 0.0032 32 1 7.1830 1.9976 0.0029 33 1 6.6263 4.5938 0.6955 34 1 5.6526 6.3021 -0.7452 35 1 0.7701 6.6715 -5.5867 36 1 3.4341 7.8176 -2.9624 37 1 4.3019 7.4004 -1.4653 38 1 5.4999 7.4124 -4.2728 39 1 5.7684 8.6525 -3.0242 40 1 6.3677 6.9951 -2.7758 41 1 3.2252 3.6618 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858754827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -29.266888 kcal Electronic energy + Delta-G solvation = -23237.908211 eV Core-core repulsion = 19890.794621 eV Total energy + Delta-G solvation = -3347.113590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17932 -40.47882 -38.54334 -36.95905 -34.62660 -34.18065 -32.88514 -31.33160 -30.77755 -30.24753 -27.40543 -25.14266 -24.46335 -23.85084 -23.10481 -21.92208 -19.90201 -18.99496 -18.61000 -17.97612 -17.24298 -17.04384 -17.01579 -16.69303 -15.77326 -15.67791 -15.12672 -14.87072 -14.68669 -14.37113 -14.29701 -14.18143 -13.98287 -13.79521 -13.49550 -13.38140 -13.02768 -12.83569 -12.70667 -12.61772 -12.50560 -12.37348 -11.97485 -11.74962 -11.63769 -11.59632 -11.04001 -10.68173 -10.31660 -9.69462 -9.04709 -8.99589 -8.54951 -6.08227 -0.08967 0.66700 0.97448 1.14977 1.30895 1.40178 2.14194 2.34142 2.51365 2.81839 2.96983 3.08694 3.84869 3.94025 3.99861 4.00347 4.11075 4.15607 4.18797 4.32373 4.42674 4.43855 4.49278 4.50695 4.59262 4.71460 4.82579 4.87547 4.94599 5.00588 5.13137 5.15390 5.22908 5.31811 5.40497 5.47377 5.54065 5.61525 5.74302 5.99414 6.04782 6.58795 6.61633 6.98764 7.35358 7.98681 8.63108 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.006008 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.940755 B = 4659.256402 C = 6028.972733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.349 6.349 4 C 0.096 3.904 5 C -0.212 4.212 6 C -0.094 4.094 7 C -0.147 4.147 8 C -0.029 4.029 9 C -0.043 4.043 10 C -0.198 4.198 11 C 0.470 3.530 12 O -0.595 6.595 13 N -0.471 5.471 14 C -0.324 4.324 15 H 0.039 0.961 16 C 0.012 3.988 17 N -0.908 5.908 18 Si 0.944 3.056 19 H -0.231 1.231 20 H -0.288 1.288 21 H -0.267 1.267 22 C 0.072 3.928 23 C -0.154 4.154 24 C -0.104 4.104 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.280 0.720 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -4.234 15.610 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.265 6.265 4 C 0.051 3.949 5 C -0.230 4.230 6 C -0.112 4.112 7 C -0.165 4.165 8 C -0.029 4.029 9 C -0.063 4.063 10 C -0.218 4.218 11 C 0.263 3.737 12 O -0.480 6.480 13 N -0.192 5.192 14 C -0.453 4.453 15 H 0.057 0.943 16 C -0.190 4.190 17 N -0.546 5.546 18 Si 0.767 3.233 19 H -0.155 1.155 20 H -0.215 1.215 21 H -0.192 1.192 22 C -0.050 4.050 23 C -0.212 4.212 24 C -0.123 4.123 25 H 0.127 0.873 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.203 0.797 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.978 -4.589 15.316 17.445 hybrid contribution -1.061 0.170 -0.628 1.245 sum 5.917 -4.418 14.688 16.440 Atomic orbital electron populations 1.21813 0.91751 1.04309 1.02694 1.23016 0.96822 0.80941 1.01969 1.86059 1.19722 1.31422 1.89248 1.19037 0.82568 0.94662 0.98593 1.21460 0.94963 0.97612 1.09008 1.21138 0.94023 0.98087 0.97902 1.21423 1.00308 0.91439 1.03363 1.18948 0.91501 0.95000 0.97444 1.22727 0.96537 0.89969 0.97053 1.23382 1.00745 1.01683 0.95994 1.19197 0.84328 0.85874 0.84351 1.90751 1.64822 1.18707 1.73743 1.43826 1.42887 1.05818 1.26681 1.18544 1.07698 1.10721 1.08331 0.94289 1.26131 0.96026 0.99410 0.97434 1.69845 1.24223 1.41341 1.19147 0.85959 0.77599 0.79918 0.79785 1.15525 1.21507 1.19203 1.22180 0.99148 0.82053 1.01608 1.22085 0.95884 1.02884 1.00341 1.20295 0.94957 0.94108 1.02942 0.87294 0.91540 0.93366 0.92340 0.90079 0.83868 0.82625 0.83099 0.79730 0.81874 0.91076 0.91973 0.88369 0.94651 0.88573 0.91426 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 10.28 71.98 0.74 -2.66 16 2 C 0.05 1.29 5.46 71.98 0.39 1.68 16 3 O -0.35 -13.71 10.13 -92.58 -0.94 -14.65 16 4 C 0.10 3.80 6.68 22.46 0.15 3.95 16 5 C -0.21 -6.71 9.04 22.44 0.20 -6.51 16 6 C -0.09 -2.61 10.02 22.21 0.22 -2.39 16 7 C -0.15 -4.33 9.79 22.59 0.22 -4.11 16 8 C -0.03 -1.01 4.34 -20.16 -0.09 -1.10 16 9 C -0.04 -1.25 9.78 23.86 0.23 -1.02 16 10 C -0.20 -6.69 8.58 23.59 0.20 -6.48 16 11 C 0.47 22.75 6.76 86.32 0.58 23.34 16 12 O -0.60 -33.88 12.31 -4.55 -0.06 -33.94 16 13 N -0.47 -23.72 2.20 -640.56 -1.41 -25.13 16 14 C -0.32 -19.90 9.36 84.15 0.79 -19.12 16 15 H 0.04 2.82 7.88 -2.91 -0.02 2.80 16 16 C 0.01 0.71 5.26 84.98 0.45 1.16 16 17 N -0.91 -55.79 13.95 21.69 0.30 -55.49 16 18 Si 0.94 43.75 25.23 68.60 1.73 45.48 16 19 H -0.23 -9.09 6.47 99.48 0.64 -8.45 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.07 2.78 4.34 86.38 0.38 3.15 16 23 C -0.15 -4.88 10.02 71.98 0.72 -4.16 16 24 C -0.10 -4.40 6.72 22.68 0.15 -4.25 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.57 7.67 -2.39 -0.02 1.55 16 29 H 0.08 1.76 7.64 -2.39 -0.02 1.75 16 30 H 0.14 3.63 6.28 -2.91 -0.02 3.61 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.16 4.11 6.00 -2.91 -0.02 4.09 16 35 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 36 H 0.06 2.55 3.40 -2.39 -0.01 2.54 16 37 H 0.10 3.01 6.55 -2.38 -0.02 3.00 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 1.94 7.34 -2.39 -0.02 1.92 16 41 H 0.08 4.06 7.47 -2.91 -0.02 4.04 16 Total: -1.00 -83.29 334.35 5.94 -77.35 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.96 Total: 24.88 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.34 Total: -18.51 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.10 Total: -80.61 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.99 Total: -48.58 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.73 Total: 45.48 kcal Total: -83.29 5.94 -77.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858754827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.084 kcal (2) G-P(sol) polarization free energy of solvation -83.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds