Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47006 * 2 1 4 4 C 1.35910 * 116.99649 * 180.02562 * 3 2 1 5 5 C 1.38900 * 119.97289 * 0.02562 * 4 3 2 6 6 C 1.38290 * 120.29090 * 180.02562 * 5 4 3 7 7 C 1.37940 * 120.23010 * 359.95001 * 6 5 4 8 8 C 1.39828 * 119.93815 * 0.02988 * 7 6 5 9 9 C 1.47220 * 120.14339 * 180.02562 * 8 7 6 10 10 C 1.34809 * 119.99777 * 131.95503 * 9 8 7 11 11 C 1.46430 * 120.00132 * 348.73553 * 10 9 8 12 12 O 1.21694 * 120.00135 * 353.31305 * 11 10 9 13 13 N 1.34775 * 119.99828 * 173.30592 * 11 10 9 14 14 C 1.46500 * 120.00158 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.46907 * 35.00186 * 14 13 11 16 16 C 1.53001 * 109.47469 * 275.00535 * 14 13 11 17 17 C 1.50699 * 109.47529 * 154.99822 * 14 13 11 18 18 H 1.08002 * 119.99702 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00187 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00046 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99725 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47083 * 90.00064 * 21 19 17 23 23 H 1.48502 * 109.46784 * 209.99643 * 21 19 17 24 24 H 1.48490 * 109.47435 * 330.00005 * 21 19 17 25 25 C 1.38385 * 119.97069 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46904 * 300.00088 * 1 2 3 28 28 H 1.09005 * 109.46983 * 60.00276 * 1 2 3 29 29 H 1.08997 * 109.47340 * 239.99846 * 2 1 3 30 30 H 1.09005 * 109.46983 * 119.99724 * 2 1 3 31 31 H 1.07998 * 119.85628 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.88432 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.03259 * 180.30271 * 7 6 5 34 34 H 1.07995 * 120.00326 * 311.95781 * 9 8 7 35 35 H 1.08005 * 119.99682 * 168.74380 * 10 9 8 36 36 H 0.96998 * 120.00403 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.46772 * 299.99735 * 16 14 13 38 38 H 1.09004 * 109.47192 * 59.99462 * 16 14 13 39 39 H 1.08992 * 109.47259 * 179.97438 * 16 14 13 40 40 H 0.96999 * 120.00187 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.10982 * 359.96972 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4234 -0.0016 6 6 5.5712 0.5969 -0.0016 7 6 6.1107 1.8664 -0.0016 8 6 5.2684 2.9826 -0.0010 9 6 5.8393 4.3396 -0.0016 10 6 5.3805 5.2634 -0.8695 11 6 4.4997 4.8621 -1.9683 12 8 4.2794 3.6828 -2.1719 13 7 3.9328 5.7990 -2.7540 14 6 3.0512 5.3976 -3.8530 15 1 2.4852 4.5132 -3.5603 16 6 3.8919 5.0782 -5.0908 17 6 2.0986 6.5217 -4.1691 18 1 2.1455 7.4432 -3.6078 19 6 1.1671 6.3738 -5.1749 20 7 1.1097 5.2516 -5.8580 21 14 -0.0132 7.7676 -5.5670 22 1 0.5904 8.6528 -6.5954 23 1 -1.2875 7.2065 -6.0832 24 1 -0.2806 8.5514 -4.3346 25 6 3.8820 2.8044 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7835 -0.5734 -0.0024 32 1 6.2226 -0.2646 -0.0029 33 1 7.1826 1.9983 -0.0066 34 1 6.6257 4.5949 0.6932 35 1 5.6626 6.2996 -0.7544 36 1 4.1086 6.7390 -2.5920 37 1 4.4579 5.9626 -5.3836 38 1 4.5809 4.2651 -4.8622 39 1 3.2360 4.7792 -5.9083 40 1 0.4542 5.1474 -6.5654 41 1 3.2254 3.6618 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858919142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -31.662469 kcal Electronic energy + Delta-G solvation = -22758.921996 eV Core-core repulsion = 19411.704526 eV Total energy + Delta-G solvation = -3347.217470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94450 -38.86405 -37.22480 -34.83236 -33.24443 -32.31578 -31.86581 -29.83020 -29.22990 -28.41976 -25.21952 -24.31863 -23.08391 -22.14725 -21.24080 -19.92964 -19.06111 -17.97513 -16.48944 -16.02804 -15.90356 -15.88097 -15.42379 -15.11165 -14.32845 -14.10532 -13.81957 -13.39540 -13.22018 -13.07310 -12.94619 -12.57005 -12.41576 -12.24979 -11.79585 -11.64134 -11.52339 -11.33505 -11.06010 -10.91346 -10.72385 -10.63759 -10.54693 -10.27848 -10.19751 -9.59391 -9.05788 -8.98568 -8.50998 -7.97463 -7.87840 -7.64684 -6.08215 -4.17211 1.06977 1.83512 2.13507 3.26545 3.33235 3.35756 3.43197 4.06763 4.13000 4.23021 4.46611 4.89772 4.96198 4.97756 5.17682 5.20812 5.23938 5.30487 5.37803 5.49162 5.54731 5.66192 5.80378 5.82780 5.85857 6.08631 6.24409 6.37442 6.43652 6.62241 6.69368 6.85303 6.89065 7.02663 7.07011 7.21239 7.54090 7.63499 7.73819 7.75667 7.97947 8.20117 8.75327 8.84496 9.23568 9.50683 10.97777 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.004735 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.904240 B = 5911.567165 C = 7258.141616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.315 6.315 4 C 0.124 3.876 5 C -0.205 4.205 6 C -0.095 4.095 7 C -0.143 4.143 8 C -0.015 4.015 9 C -0.054 4.054 10 C -0.187 4.187 11 C 0.518 3.482 12 O -0.538 6.538 13 N -0.703 5.703 14 C 0.265 3.735 15 H 0.049 0.951 16 C -0.145 4.145 17 C -0.532 4.532 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.074 4.074 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.387 0.613 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.089 0.911 40 H 0.263 0.737 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -6.921 13.367 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.229 6.229 4 C 0.079 3.921 5 C -0.224 4.224 6 C -0.113 4.113 7 C -0.161 4.161 8 C -0.015 4.015 9 C -0.074 4.074 10 C -0.208 4.208 11 C 0.305 3.695 12 O -0.418 6.418 13 N -0.350 5.350 14 C 0.163 3.837 15 H 0.067 0.933 16 C -0.204 4.204 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.728 3.272 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.093 4.093 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.220 0.780 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.182 -7.706 13.013 16.338 hybrid contribution -0.420 1.061 -0.427 1.219 sum 5.762 -6.645 12.586 15.354 Atomic orbital electron populations 1.21771 0.92977 1.02465 1.03756 1.22697 0.95771 0.82475 1.00890 1.86106 1.19246 1.28651 1.88887 1.18728 0.82082 0.93946 0.97363 1.21163 0.94440 0.97506 1.09306 1.20641 0.94098 0.96874 0.99653 1.20977 0.98908 0.91828 1.04434 1.18543 0.92168 0.92777 0.98029 1.22211 0.96562 0.91626 0.96966 1.23356 1.01009 0.99642 0.96826 1.18409 0.81221 0.86627 0.83268 1.90863 1.61853 1.16988 1.72054 1.46510 1.47496 1.08449 1.32567 1.18712 0.86729 0.96691 0.81551 0.93323 1.22061 0.98978 0.97433 1.01931 1.21227 1.16833 1.00663 1.18355 0.92149 1.24883 0.97206 0.95935 0.95682 1.69907 1.35352 1.24696 1.22162 0.86463 0.80279 0.81859 0.78581 1.20583 1.21095 1.19859 1.20308 0.93819 0.94667 1.00504 0.90693 0.91695 0.91163 0.92217 0.92569 0.86230 0.86370 0.86366 0.84922 0.85365 0.78049 0.95609 0.96690 0.89284 0.92650 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.06 0.73 5.46 37.16 0.20 0.93 16 3 O -0.31 -5.49 10.13 -19.46 -0.20 -5.68 16 4 C 0.12 2.18 6.68 -39.28 -0.26 1.92 16 5 C -0.21 -3.09 9.04 -39.32 -0.36 -3.44 16 6 C -0.09 -1.31 10.02 -39.67 -0.40 -1.71 16 7 C -0.14 -2.06 9.79 -39.10 -0.38 -2.45 16 8 C -0.01 -0.24 4.34 -105.08 -0.46 -0.70 16 9 C -0.05 -0.74 9.78 -37.15 -0.36 -1.10 16 10 C -0.19 -2.81 9.92 -37.50 -0.37 -3.19 16 11 C 0.52 10.59 6.92 -12.96 -0.09 10.50 16 12 O -0.54 -12.87 12.14 5.19 0.06 -12.80 16 13 N -0.70 -15.05 5.06 -56.32 -0.29 -15.34 16 14 C 0.27 6.92 2.56 -69.08 -0.18 6.75 16 15 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 16 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 17 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 21 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.07 -1.36 6.72 -38.95 -0.26 -1.62 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.12 1.49 6.28 -52.49 -0.33 1.16 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.39 7.15 8.52 -40.82 -0.35 6.80 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.12 2.39 7.45 -52.49 -0.39 1.99 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -32.71 344.51 -8.12 -40.83 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.92 Total: 8.39 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.58 Total: -11.77 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.34 Total: -40.10 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.13 Total: -18.49 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.71 -8.12 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.171 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds