Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47006 * 2 1 4 4 C 1.35910 * 116.99649 * 180.02562 * 3 2 1 5 5 C 1.38900 * 119.97289 * 0.02562 * 4 3 2 6 6 C 1.38290 * 120.29090 * 180.02562 * 5 4 3 7 7 C 1.37940 * 120.23010 * 359.95001 * 6 5 4 8 8 C 1.39828 * 119.93815 * 0.02988 * 7 6 5 9 9 C 1.47220 * 120.14339 * 180.02562 * 8 7 6 10 10 C 1.34809 * 119.99777 * 131.95503 * 9 8 7 11 11 C 1.46430 * 120.00132 * 348.73553 * 10 9 8 12 12 O 1.21694 * 120.00135 * 353.31305 * 11 10 9 13 13 N 1.34775 * 119.99828 * 173.30592 * 11 10 9 14 14 C 1.46500 * 120.00158 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.46907 * 35.00186 * 14 13 11 16 16 C 1.53001 * 109.47469 * 275.00535 * 14 13 11 17 17 C 1.50699 * 109.47529 * 154.99822 * 14 13 11 18 18 H 1.08002 * 119.99702 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00187 * 180.02562 * 17 14 13 20 20 N 1.31508 * 120.00046 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99725 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.47083 * 90.00064 * 21 19 17 23 23 H 1.48502 * 109.46784 * 209.99643 * 21 19 17 24 24 H 1.48490 * 109.47435 * 330.00005 * 21 19 17 25 25 C 1.38385 * 119.97069 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46904 * 300.00088 * 1 2 3 28 28 H 1.09005 * 109.46983 * 60.00276 * 1 2 3 29 29 H 1.08997 * 109.47340 * 239.99846 * 2 1 3 30 30 H 1.09005 * 109.46983 * 119.99724 * 2 1 3 31 31 H 1.07998 * 119.85628 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.88432 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.03259 * 180.30271 * 7 6 5 34 34 H 1.07995 * 120.00326 * 311.95781 * 9 8 7 35 35 H 1.08005 * 119.99682 * 168.74380 * 10 9 8 36 36 H 0.96998 * 120.00403 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.46772 * 299.99735 * 16 14 13 38 38 H 1.09004 * 109.47192 * 59.99462 * 16 14 13 39 39 H 1.08992 * 109.47259 * 179.97438 * 16 14 13 40 40 H 0.96999 * 120.00187 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.10982 * 359.96972 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4234 -0.0016 6 6 5.5712 0.5969 -0.0016 7 6 6.1107 1.8664 -0.0016 8 6 5.2684 2.9826 -0.0010 9 6 5.8393 4.3396 -0.0016 10 6 5.3805 5.2634 -0.8695 11 6 4.4997 4.8621 -1.9683 12 8 4.2794 3.6828 -2.1719 13 7 3.9328 5.7990 -2.7540 14 6 3.0512 5.3976 -3.8530 15 1 2.4852 4.5132 -3.5603 16 6 3.8919 5.0782 -5.0908 17 6 2.0986 6.5217 -4.1691 18 1 2.1455 7.4432 -3.6078 19 6 1.1671 6.3738 -5.1749 20 7 1.1097 5.2516 -5.8580 21 14 -0.0132 7.7676 -5.5670 22 1 0.5904 8.6528 -6.5954 23 1 -1.2875 7.2065 -6.0832 24 1 -0.2806 8.5514 -4.3346 25 6 3.8820 2.8044 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7835 -0.5734 -0.0024 32 1 6.2226 -0.2646 -0.0029 33 1 7.1826 1.9983 -0.0066 34 1 6.6257 4.5949 0.6932 35 1 5.6626 6.2996 -0.7544 36 1 4.1086 6.7390 -2.5920 37 1 4.4579 5.9626 -5.3836 38 1 4.5809 4.2651 -4.8622 39 1 3.2360 4.7792 -5.9083 40 1 0.4542 5.1474 -6.5654 41 1 3.2254 3.6618 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858919142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -52.721036 kcal Electronic energy + Delta-G solvation = -22759.835164 eV Core-core repulsion = 19411.704526 eV Total energy + Delta-G solvation = -3348.130638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20285 -40.38267 -38.48330 -36.69928 -34.51089 -34.28295 -32.89495 -31.37799 -30.50459 -29.94390 -27.35932 -25.56830 -24.33586 -23.43625 -22.63236 -21.62455 -20.55888 -19.35495 -18.20170 -17.50516 -17.09317 -17.02663 -17.00504 -16.71229 -15.96355 -15.64060 -15.19459 -14.77627 -14.48918 -14.40914 -14.35477 -14.09733 -13.68605 -13.61571 -13.39191 -13.00282 -12.87684 -12.85203 -12.71302 -12.57372 -12.45532 -12.29533 -12.14746 -11.76683 -11.63961 -11.11543 -10.83025 -10.64174 -10.53463 -9.67282 -9.14732 -9.00914 -8.18421 -6.36247 -0.12760 0.63480 0.94444 1.42652 1.44053 1.54650 2.32405 2.36284 2.57649 2.79233 2.93687 3.11927 3.81013 3.91701 4.00138 4.09891 4.14357 4.17643 4.31921 4.40616 4.47567 4.56734 4.68854 4.73688 4.82313 4.87658 4.90627 5.08661 5.09617 5.15161 5.19099 5.29449 5.43409 5.46682 5.55720 5.62507 5.68190 5.71512 5.92512 5.98692 6.10214 6.56118 6.72538 7.06880 7.32356 7.66577 8.88045 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.004735 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.904240 B = 5911.567165 C = 7258.141616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.348 6.348 4 C 0.097 3.903 5 C -0.211 4.211 6 C -0.093 4.093 7 C -0.145 4.145 8 C -0.034 4.034 9 C -0.028 4.028 10 C -0.203 4.203 11 C 0.510 3.490 12 O -0.580 6.580 13 N -0.704 5.704 14 C 0.274 3.726 15 H -0.008 1.008 16 C -0.130 4.130 17 C -0.547 4.547 18 H 0.072 0.928 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.974 3.026 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.107 4.107 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.403 0.597 37 H 0.040 0.960 38 H 0.009 0.991 39 H 0.064 0.936 40 H 0.265 0.735 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -6.397 14.765 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.264 6.264 4 C 0.052 3.948 5 C -0.230 4.230 6 C -0.111 4.111 7 C -0.163 4.163 8 C -0.034 4.034 9 C -0.048 4.048 10 C -0.223 4.223 11 C 0.299 3.701 12 O -0.462 6.462 13 N -0.353 5.353 14 C 0.170 3.830 15 H 0.010 0.990 16 C -0.188 4.188 17 C -0.585 4.585 18 H 0.090 0.910 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.126 4.126 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.204 0.796 35 H 0.188 0.812 36 H 0.238 0.762 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.074 -7.157 14.440 18.025 hybrid contribution -0.990 0.738 -0.800 1.471 sum 7.084 -6.419 13.639 16.656 Atomic orbital electron populations 1.21817 0.91836 1.04291 1.02702 1.23012 0.96769 0.80912 1.01986 1.86066 1.19723 1.31415 1.89178 1.19064 0.82570 0.94745 0.98429 1.21490 0.95028 0.97728 1.08719 1.21159 0.93991 0.98214 0.97738 1.21429 1.00422 0.91385 1.03057 1.18960 0.91494 0.95025 0.97922 1.22762 0.95932 0.89720 0.96346 1.23309 1.00930 1.02146 0.95930 1.19355 0.80944 0.85778 0.83984 1.90845 1.63323 1.18841 1.73217 1.46259 1.47344 1.09670 1.32009 1.18239 0.87238 0.94577 0.82913 0.99045 1.21860 0.98262 0.97680 1.01041 1.21559 1.17253 1.01085 1.18585 0.90965 1.25836 0.98953 0.98467 0.95458 1.70067 1.36144 1.26857 1.22683 0.85322 0.77592 0.78563 0.78720 1.19396 1.21204 1.18849 1.20316 0.94915 0.94170 1.03178 0.87365 0.91514 0.93402 0.92297 0.90056 0.83969 0.82672 0.82959 0.79587 0.81190 0.76187 0.94112 0.97225 0.91738 0.92607 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 10.28 71.98 0.74 -2.59 16 2 C 0.05 1.25 5.46 71.98 0.39 1.64 16 3 O -0.35 -13.00 10.13 -92.54 -0.94 -13.93 16 4 C 0.10 3.56 6.68 22.46 0.15 3.71 16 5 C -0.21 -6.23 9.04 22.44 0.20 -6.02 16 6 C -0.09 -2.37 10.02 22.21 0.22 -2.15 16 7 C -0.14 -3.81 9.79 22.58 0.22 -3.59 16 8 C -0.03 -1.06 4.34 -20.16 -0.09 -1.15 16 9 C -0.03 -0.70 9.78 23.84 0.23 -0.46 16 10 C -0.20 -5.73 9.92 23.62 0.23 -5.49 16 11 C 0.51 21.28 6.92 86.38 0.60 21.88 16 12 O -0.58 -29.14 12.14 -4.33 -0.05 -29.19 16 13 N -0.70 -30.81 5.06 -450.33 -2.28 -33.09 16 14 C 0.27 14.96 2.56 44.25 0.11 15.07 16 15 H -0.01 -0.55 7.58 -2.38 -0.02 -0.56 16 16 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 17 C -0.55 -30.11 8.73 25.60 0.22 -29.89 16 18 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 19 C 0.01 0.70 5.30 84.66 0.45 1.15 16 20 N -0.92 -54.62 11.32 21.45 0.24 -54.38 16 21 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 C -0.11 -4.11 6.72 22.68 0.15 -3.96 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 30 H 0.08 1.68 7.66 -2.38 -0.02 1.66 16 31 H 0.14 3.37 6.28 -2.91 -0.02 3.35 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.40 14.75 8.52 -92.71 -0.79 13.96 16 37 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.09 3.87 7.45 -2.91 -0.02 3.85 16 Total: -1.00 -77.04 344.51 3.75 -73.29 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.24 Total: 30.16 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.51 Total: -18.09 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -2.04 Total: -87.47 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.99 Total: -43.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -77.04 3.75 -73.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.569 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds