Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47585 * 2 1 4 4 C 1.35907 * 117.00236 * 180.02562 * 3 2 1 5 5 C 1.38898 * 119.97190 * 0.25690 * 4 3 2 6 6 C 1.38290 * 120.28940 * 180.30075 * 5 4 3 7 7 C 1.37940 * 120.23101 * 359.71840 * 6 5 4 8 8 C 1.39832 * 119.93938 * 0.02562 * 7 6 5 9 9 C 1.47209 * 120.14444 * 179.97438 * 8 7 6 10 10 C 1.34814 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.46435 * 119.99844 * 179.97438 * 10 9 8 12 12 O 1.21692 * 119.99783 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00148 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47456 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.47341 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99782 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00245 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47077 * 90.00186 * 20 18 16 22 22 H 1.48496 * 109.47376 * 210.00554 * 20 18 16 23 23 H 1.48503 * 109.46818 * 330.00771 * 20 18 16 24 24 C 1.38381 * 119.96963 * 179.97438 * 4 3 2 25 25 H 1.08994 * 109.47501 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46845 * 299.99789 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99303 * 1 2 3 28 28 H 1.09004 * 109.46845 * 240.00210 * 2 1 3 29 29 H 1.09007 * 109.47620 * 120.00117 * 2 1 3 30 30 H 1.08001 * 119.85674 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.88519 * 179.70089 * 6 5 4 32 32 H 1.08006 * 120.03093 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.00436 * 180.02562 * 9 8 7 34 34 H 1.08000 * 119.99502 * 359.97438 * 10 9 8 35 35 H 0.97008 * 120.00268 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.47653 * 300.00403 * 14 13 11 37 37 H 1.09002 * 109.46887 * 60.00319 * 14 13 11 38 38 H 1.09003 * 109.47342 * 300.00217 * 15 14 13 39 39 H 1.09001 * 109.47196 * 60.00623 * 15 14 13 40 40 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.11922 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4233 -0.0065 6 6 5.5712 0.5968 -0.0008 7 6 6.1107 1.8663 0.0050 8 6 5.2684 2.9825 0.0056 9 6 5.8393 4.3394 0.0123 10 6 7.1769 4.5080 0.0173 11 6 7.7447 5.8577 0.0233 12 8 7.0092 6.8272 0.0234 13 7 9.0818 6.0262 0.0289 14 6 9.6500 7.3765 0.0344 15 6 11.1773 7.2872 0.0407 16 6 11.7618 8.6762 0.0470 17 1 11.1091 9.5367 0.0461 18 6 13.1297 8.8486 0.0527 19 7 13.6397 10.0608 0.0577 20 14 14.2587 7.3603 0.0535 21 1 14.5633 6.9695 -1.3464 22 1 15.5210 7.6969 0.7594 23 1 13.5890 6.2314 0.7480 24 6 3.8820 2.8043 -0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7834 -0.5734 -0.0102 31 1 6.2226 -0.2647 -0.0005 32 1 7.1827 1.9981 0.0098 33 1 5.1867 5.1999 0.0131 34 1 7.8295 3.6475 0.0168 35 1 9.6681 5.2533 0.0285 36 1 9.3207 7.9129 -0.8554 37 1 9.3139 7.9084 0.9245 38 1 11.5063 6.7509 0.9308 39 1 11.5138 6.7551 -0.8492 40 1 14.6021 10.1821 0.0622 41 1 3.2255 3.6618 -0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -47.275164 kcal Electronic energy + Delta-G solvation = -20776.177644 eV Core-core repulsion = 17428.283157 eV Total energy + Delta-G solvation = -3347.894487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50565 -39.33078 -38.05573 -35.06845 -33.91301 -32.78635 -32.45727 -30.76434 -30.10237 -29.17657 -25.65527 -24.47186 -23.07808 -22.85852 -21.04466 -20.73169 -19.46891 -18.12682 -17.19261 -16.86575 -16.54329 -16.52883 -15.94102 -15.09126 -14.93726 -14.70407 -14.20429 -13.95683 -13.86392 -13.78913 -13.31042 -13.27219 -13.02954 -12.61443 -12.57936 -12.52059 -12.07966 -11.70891 -11.49031 -11.31104 -11.20864 -11.14131 -10.44800 -10.34619 -10.28265 -9.96715 -9.58369 -9.30781 -8.81568 -8.63912 -8.55610 -8.34093 -6.10641 -4.10793 0.32172 1.11061 1.85980 2.74812 3.25416 3.32995 3.34250 3.38003 3.62773 3.69326 4.35940 4.37952 4.42545 4.43102 4.59453 4.64199 4.73777 4.84286 4.90775 5.06142 5.13173 5.19458 5.22227 5.29257 5.39749 5.54709 5.57832 5.85116 5.91690 6.02154 6.07863 6.21318 6.24293 6.40187 6.43062 6.56571 6.75298 7.03108 7.14423 7.23541 7.66916 7.91537 8.43842 8.56972 8.93781 9.49388 11.02395 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.002087 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.997302 B =13413.233726 C =14019.155144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.128 3.872 5 C -0.205 4.205 6 C -0.081 4.081 7 C -0.142 4.142 8 C -0.026 4.026 9 C -0.040 4.040 10 C -0.189 4.189 11 C 0.535 3.465 12 O -0.550 6.550 13 N -0.719 5.719 14 C 0.129 3.871 15 C -0.023 4.023 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.132 4.132 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.397 0.603 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 -25.791 -0.115 33.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.082 3.918 5 C -0.223 4.223 6 C -0.099 4.099 7 C -0.160 4.160 8 C -0.026 4.026 9 C -0.059 4.059 10 C -0.209 4.209 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.368 5.368 14 C 0.007 3.993 15 C -0.060 4.060 16 C -0.562 4.562 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.312 -24.820 -0.110 33.375 hybrid contribution 1.195 -1.371 -0.019 1.819 sum -21.117 -26.191 -0.129 33.644 Atomic orbital electron populations 1.21780 0.92629 1.02905 1.03685 1.22793 0.95987 0.81915 1.01387 1.86088 1.18905 1.29360 1.88693 1.18833 0.82369 0.93922 0.96635 1.21347 0.94474 0.97989 1.08534 1.20875 0.94238 0.97293 0.97456 1.21370 1.00096 0.91799 1.02750 1.18813 0.92176 0.93006 0.98608 1.22287 0.95443 0.94995 0.93215 1.23131 0.96267 0.96871 1.04653 1.18297 0.82791 0.89192 0.77398 1.90800 1.59692 1.41923 1.50599 1.46236 1.06174 1.10907 1.73522 1.21531 0.95359 0.80724 1.01731 1.19802 0.90345 0.99030 0.96855 1.20925 0.92383 0.91195 1.51652 0.90605 1.25002 0.98121 0.95791 0.94374 1.69904 1.12356 1.20972 1.50418 0.86748 0.80301 0.83515 0.78483 1.20234 1.21267 1.19086 1.20611 0.94204 0.95252 1.05030 0.90329 0.91426 0.91420 0.92007 0.92005 0.85501 0.85426 0.85141 0.84388 0.85340 0.76950 0.91839 0.91817 0.95961 0.96401 0.92556 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.15 0.38 -0.28 16 2 C 0.05 0.31 5.46 37.15 0.20 0.52 16 3 O -0.32 -2.93 10.13 -19.45 -0.20 -3.12 16 4 C 0.13 1.24 6.68 -39.28 -0.26 0.97 16 5 C -0.20 -1.67 9.04 -39.32 -0.36 -2.02 16 6 C -0.08 -0.64 10.02 -39.67 -0.40 -1.04 16 7 C -0.14 -1.29 9.41 -39.09 -0.37 -1.66 16 8 C -0.03 -0.27 5.87 -105.08 -0.62 -0.89 16 9 C -0.04 -0.47 9.46 -37.15 -0.35 -0.82 16 10 C -0.19 -2.32 9.41 -37.50 -0.35 -2.67 16 11 C 0.54 8.94 7.74 -12.96 -0.10 8.84 16 12 O -0.55 -11.33 16.23 5.20 0.08 -11.25 16 13 N -0.72 -11.98 5.55 -61.71 -0.34 -12.32 16 14 C 0.13 2.66 5.61 -4.05 -0.02 2.64 16 15 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 16 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 17 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 24 C -0.13 -1.36 9.73 -38.95 -0.38 -1.74 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 7.64 -51.93 -0.40 -0.10 16 29 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 30 H 0.13 0.74 6.28 -52.49 -0.33 0.41 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.98 6.16 -52.48 -0.32 0.65 16 33 H 0.14 1.71 7.52 -52.49 -0.39 1.32 16 34 H 0.13 1.19 6.07 -52.49 -0.32 0.87 16 35 H 0.40 5.39 8.45 -40.82 -0.35 5.04 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 39 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -33.74 349.78 -8.07 -41.81 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.82 Total: 1.81 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -3.17 Total: -11.95 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.43 Total: -38.95 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.11 Total: -14.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.74 -8.07 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.467 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds