Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.47585 * 2 1 4 4 C 1.35907 * 117.00236 * 180.02562 * 3 2 1 5 5 C 1.38898 * 119.97190 * 0.25690 * 4 3 2 6 6 C 1.38290 * 120.28940 * 180.30075 * 5 4 3 7 7 C 1.37940 * 120.23101 * 359.71840 * 6 5 4 8 8 C 1.39832 * 119.93938 * 0.02562 * 7 6 5 9 9 C 1.47209 * 120.14444 * 179.97438 * 8 7 6 10 10 C 1.34814 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.46435 * 119.99844 * 179.97438 * 10 9 8 12 12 O 1.21692 * 119.99783 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00148 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47456 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.47341 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99782 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00245 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47077 * 90.00186 * 20 18 16 22 22 H 1.48496 * 109.47376 * 210.00554 * 20 18 16 23 23 H 1.48503 * 109.46818 * 330.00771 * 20 18 16 24 24 C 1.38381 * 119.96963 * 179.97438 * 4 3 2 25 25 H 1.08994 * 109.47501 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46845 * 299.99789 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99303 * 1 2 3 28 28 H 1.09004 * 109.46845 * 240.00210 * 2 1 3 29 29 H 1.09007 * 109.47620 * 120.00117 * 2 1 3 30 30 H 1.08001 * 119.85674 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.88519 * 179.70089 * 6 5 4 32 32 H 1.08006 * 120.03093 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.00436 * 180.02562 * 9 8 7 34 34 H 1.08000 * 119.99502 * 359.97438 * 10 9 8 35 35 H 0.97008 * 120.00268 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.47653 * 300.00403 * 14 13 11 37 37 H 1.09002 * 109.46887 * 60.00319 * 14 13 11 38 38 H 1.09003 * 109.47342 * 300.00217 * 15 14 13 39 39 H 1.09001 * 109.47196 * 60.00623 * 15 14 13 40 40 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.11922 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1993 0.4233 -0.0065 6 6 5.5712 0.5968 -0.0008 7 6 6.1107 1.8663 0.0050 8 6 5.2684 2.9825 0.0056 9 6 5.8393 4.3394 0.0123 10 6 7.1769 4.5080 0.0173 11 6 7.7447 5.8577 0.0233 12 8 7.0092 6.8272 0.0234 13 7 9.0818 6.0262 0.0289 14 6 9.6500 7.3765 0.0344 15 6 11.1773 7.2872 0.0407 16 6 11.7618 8.6762 0.0470 17 1 11.1091 9.5367 0.0461 18 6 13.1297 8.8486 0.0527 19 7 13.6397 10.0608 0.0577 20 14 14.2587 7.3603 0.0535 21 1 14.5633 6.9695 -1.3464 22 1 15.5210 7.6969 0.7594 23 1 13.5890 6.2314 0.7480 24 6 3.8820 2.8043 -0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7834 -0.5734 -0.0102 31 1 6.2226 -0.2647 -0.0005 32 1 7.1827 1.9981 0.0098 33 1 5.1867 5.1999 0.0131 34 1 7.8295 3.6475 0.0168 35 1 9.6681 5.2533 0.0285 36 1 9.3207 7.9129 -0.8554 37 1 9.3139 7.9084 0.9245 38 1 11.5063 6.7509 0.9308 39 1 11.5138 6.7551 -0.8492 40 1 14.6021 10.1821 0.0622 41 1 3.2255 3.6618 -0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860745916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -69.414658 kcal Electronic energy + Delta-G solvation = -20777.137685 eV Core-core repulsion = 17428.283157 eV Total energy + Delta-G solvation = -3348.854528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16645 -40.65183 -38.74613 -36.69411 -34.82865 -34.77624 -32.92461 -32.20833 -31.12630 -30.00105 -27.21105 -25.41549 -23.90063 -23.58967 -22.62188 -21.88646 -20.51614 -19.06627 -18.78413 -18.27852 -17.16903 -17.04530 -16.91770 -16.47073 -16.27547 -16.19684 -15.58768 -14.93737 -14.81044 -14.65726 -14.53391 -14.38294 -14.24930 -13.41468 -13.35101 -13.26391 -13.19604 -13.03684 -12.71083 -12.37380 -12.17588 -12.16287 -11.78390 -11.75969 -11.75210 -11.51986 -11.17744 -11.00409 -10.78333 -10.09621 -9.50507 -9.10294 -8.29524 -6.37188 -0.51281 0.45374 0.97186 1.39948 1.42915 1.54218 2.16230 2.28478 2.35577 2.37736 2.87870 3.05509 3.60773 3.79902 3.96855 4.02091 4.06250 4.16186 4.19870 4.31936 4.37401 4.38077 4.42272 4.45469 4.52096 4.74837 4.84738 4.91870 4.93945 5.08356 5.14211 5.18848 5.24470 5.33114 5.40570 5.43824 5.44662 5.62438 5.64854 5.76283 6.22399 6.44061 6.62341 6.71615 7.26637 7.28147 8.87300 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043946 B = 0.002087 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.997302 B =13413.233726 C =14019.155144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.337 6.337 4 C 0.114 3.886 5 C -0.199 4.199 6 C -0.080 4.080 7 C -0.142 4.142 8 C -0.043 4.043 9 C -0.025 4.025 10 C -0.194 4.194 11 C 0.533 3.467 12 O -0.600 6.600 13 N -0.708 5.708 14 C 0.143 3.857 15 C -0.013 4.013 16 C -0.542 4.542 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 C -0.150 4.150 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.417 0.583 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.304 -30.782 -0.116 37.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.068 3.932 5 C -0.217 4.217 6 C -0.098 4.098 7 C -0.160 4.160 8 C -0.043 4.043 9 C -0.045 4.045 10 C -0.214 4.214 11 C 0.324 3.676 12 O -0.483 6.483 13 N -0.359 5.359 14 C 0.019 3.981 15 C -0.050 4.050 16 C -0.580 4.580 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.158 1.158 24 C -0.169 4.169 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.185 0.815 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.798 -29.856 -0.110 36.967 hybrid contribution 0.840 0.201 -0.022 0.864 sum -20.958 -29.656 -0.132 36.314 Atomic orbital electron populations 1.21818 0.91843 1.04180 1.03032 1.23079 0.96705 0.80627 1.02497 1.86073 1.18826 1.31561 1.88734 1.18982 0.82951 0.94145 0.97084 1.21699 0.94648 0.98606 1.06784 1.21266 0.94503 0.97858 0.96142 1.21658 1.00936 0.91671 1.01741 1.18745 0.92405 0.92628 1.00544 1.22315 0.95270 0.95560 0.91317 1.22982 0.96646 0.95200 1.06619 1.18990 0.82256 0.90495 0.75887 1.90781 1.60699 1.44010 1.52812 1.45944 1.06652 1.09795 1.73502 1.21049 0.94383 0.82764 0.99941 1.19657 0.91145 0.96006 0.98228 1.21270 0.92462 0.92575 1.51692 0.95474 1.26108 1.00071 0.99596 0.93602 1.70081 1.12995 1.24080 1.51924 0.85515 0.77410 0.79462 0.79345 1.18953 1.21273 1.15787 1.20717 0.94480 0.95861 1.05826 0.88061 0.92087 0.92078 0.90805 0.90812 0.83046 0.82340 0.83179 0.86133 0.81450 0.74621 0.93832 0.93840 0.94289 0.94428 0.92333 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 71.98 0.74 -0.35 16 2 C 0.05 0.44 5.46 71.98 0.39 0.83 16 3 O -0.34 -5.96 10.13 -92.51 -0.94 -6.89 16 4 C 0.11 2.05 6.68 22.46 0.15 2.20 16 5 C -0.20 -2.62 9.04 22.44 0.20 -2.42 16 6 C -0.08 -0.95 10.02 22.21 0.22 -0.73 16 7 C -0.14 -2.11 9.41 22.59 0.21 -1.89 16 8 C -0.04 -0.84 5.87 -20.16 -0.12 -0.96 16 9 C -0.02 -0.56 9.46 23.84 0.23 -0.34 16 10 C -0.19 -4.42 9.41 23.62 0.22 -4.20 16 11 C 0.53 17.56 7.74 86.38 0.67 18.23 16 12 O -0.60 -25.52 16.23 -4.32 -0.07 -25.59 16 13 N -0.71 -22.63 5.55 -467.37 -2.59 -25.22 16 14 C 0.14 5.95 5.61 86.38 0.48 6.44 16 15 C -0.01 -0.56 4.16 29.85 0.12 -0.44 16 16 C -0.54 -31.23 9.66 25.60 0.25 -30.99 16 17 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 18 C 0.00 0.19 5.47 84.65 0.46 0.65 16 19 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 20 Si 0.96 42.21 27.47 68.60 1.88 44.10 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 24 C -0.15 -3.05 9.73 22.68 0.22 -2.83 16 25 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.52 7.64 -2.38 -0.02 0.50 16 29 H 0.07 0.52 7.67 -2.38 -0.02 0.50 16 30 H 0.15 1.17 6.28 -2.91 -0.02 1.15 16 31 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.15 1.55 6.16 -2.91 -0.02 1.54 16 33 H 0.12 3.14 7.52 -2.91 -0.02 3.12 16 34 H 0.17 2.41 6.07 -2.91 -0.02 2.40 16 35 H 0.42 9.96 8.45 -92.70 -0.78 9.17 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 39 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -76.97 349.78 3.24 -73.73 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.20 Total: 16.00 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.46 Total: -16.81 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.30 Total: -84.54 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.01 Total: -32.48 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Total: -76.97 3.24 -73.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.315 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds