Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47365 * 2 1 4 4 C 1.42900 * 114.00104 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.91806 * 32.44304 * 4 3 2 6 6 C 1.55157 * 111.00185 * 156.35263 * 4 3 2 7 7 C 1.54340 * 103.01995 * 153.37878 * 6 4 3 8 8 N 1.47027 * 107.26384 * 338.13850 * 7 6 4 9 9 C 1.34771 * 125.64349 * 178.85117 * 8 7 6 10 10 O 1.21613 * 119.99436 * 183.79130 * 9 8 7 11 11 C 1.47432 * 120.00390 * 3.78696 * 9 8 7 12 12 C 1.39230 * 120.28184 * 316.34344 * 11 9 8 13 13 C 1.38217 * 120.08865 * 180.27443 * 12 11 9 14 14 C 1.38826 * 120.67886 * 359.76670 * 13 12 11 15 15 C 1.37594 * 120.57011 * 359.95493 * 14 13 12 16 16 C 1.40705 * 119.88310 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.33053 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00060 * 141.18651 * 17 16 15 19 19 C 1.40274 * 119.99529 * 321.18443 * 17 16 15 20 20 N 1.30634 * 120.00069 * 349.00269 * 19 17 16 21 21 Si 1.86800 * 119.99530 * 168.72855 * 19 17 16 22 22 H 1.48505 * 109.46851 * 180.27759 * 21 19 17 23 23 H 1.48500 * 109.47117 * 300.27076 * 21 19 17 24 24 H 1.48501 * 109.47325 * 60.27758 * 21 19 17 25 25 C 1.47422 * 108.70358 * 358.58657 * 8 7 6 26 26 H 1.09002 * 109.47253 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47267 * 299.99619 * 1 2 3 29 29 H 1.09007 * 109.47384 * 240.00189 * 2 1 3 30 30 H 1.09003 * 109.47525 * 120.00451 * 2 1 3 31 31 H 1.09004 * 110.71620 * 271.93197 * 6 4 3 32 32 H 1.08992 * 110.72392 * 35.20823 * 6 4 3 33 33 H 1.08998 * 109.98967 * 218.66155 * 7 6 4 34 34 H 1.09004 * 109.77743 * 97.49032 * 7 6 4 35 35 H 1.07995 * 119.95073 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.66020 * 179.74099 * 13 12 11 37 37 H 1.08004 * 119.71573 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.05801 * 180.02562 * 15 14 13 39 39 H 0.96995 * 119.99637 * 353.77907 * 20 19 17 40 40 H 1.09002 * 110.36791 * 143.19793 * 25 8 7 41 41 H 1.09007 * 110.36409 * 265.41198 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8864 0.6344 -0.5471 6 6 3.8802 2.8268 -0.5816 7 6 5.2458 3.0615 0.0982 8 7 5.2725 2.2418 1.3184 9 6 6.3037 2.1513 2.1814 10 8 6.2415 1.3866 3.1251 11 6 7.5071 2.9791 1.9815 12 6 8.0575 3.1224 0.7107 13 6 9.1892 3.8949 0.5288 14 6 9.7872 4.5393 1.6032 15 6 9.2630 4.4213 2.8699 16 6 8.1115 3.6412 3.0822 17 6 7.5665 3.5142 4.3753 18 1 6.4952 3.5064 4.5114 19 6 8.4156 3.3980 5.4858 20 7 9.6937 3.1916 5.3120 21 14 7.7196 3.5461 7.2130 22 1 8.8159 3.3940 8.2031 23 1 7.0847 4.8783 7.3783 24 1 6.7051 2.4837 7.4307 25 6 3.9820 1.5403 1.4450 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9909 2.7678 -1.6644 32 1 3.1767 3.6127 -0.3069 33 1 5.3575 4.1145 0.3564 34 1 6.0490 2.7547 -0.5720 35 1 7.6024 2.6254 -0.1332 36 1 9.6128 3.9979 -0.4594 37 1 10.6713 5.1388 1.4434 38 1 9.7347 4.9265 3.6998 39 1 10.0420 3.0288 4.4215 40 1 4.1324 0.5394 1.8497 41 1 3.3025 2.1078 2.0809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885325897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -63.230634 kcal Electronic energy + Delta-G solvation = -23003.574046 eV Core-core repulsion = 19654.987678 eV Total energy + Delta-G solvation = -3348.586368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79652 -38.38109 -37.10832 -35.96675 -33.88661 -31.86535 -30.50023 -29.88793 -29.45192 -28.02393 -25.29247 -23.84719 -22.91084 -21.56305 -21.35038 -20.77255 -19.08448 -17.72398 -17.24427 -16.60868 -15.75247 -15.19759 -15.14352 -14.73316 -14.44575 -14.22586 -13.83591 -13.61722 -13.35203 -12.98646 -12.78172 -12.52279 -12.39073 -12.28775 -12.12779 -11.93150 -11.57515 -11.39756 -11.22956 -11.16527 -10.96652 -10.75986 -10.66602 -10.34425 -10.09180 -9.70924 -9.40498 -9.14951 -8.80067 -8.12826 -7.82731 -7.59001 -7.10549 -4.49391 2.27737 2.69350 3.21381 3.23490 3.30559 3.42003 3.69714 3.89940 4.08269 4.48878 4.63294 4.66874 4.85926 4.87855 5.02960 5.15691 5.20688 5.32537 5.35973 5.55325 5.61446 5.69519 5.73818 5.79692 5.84827 5.96249 5.99868 6.02060 6.11686 6.17875 6.35693 6.71091 6.79115 6.92177 7.09690 7.23391 7.45144 7.61843 7.68217 7.82199 8.01076 8.14734 8.21964 8.62970 8.83557 9.12725 10.15397 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.004637 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.439748 B = 6036.379780 C = 7349.775478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.374 6.374 4 C 0.076 3.924 5 H 0.076 0.924 6 C -0.126 4.126 7 C 0.106 3.894 8 N -0.627 5.627 9 C 0.595 3.405 10 O -0.530 6.530 11 C -0.245 4.245 12 C -0.056 4.056 13 C -0.249 4.249 14 C -0.077 4.077 15 C -0.199 4.199 16 C 0.130 3.870 17 C -0.488 4.488 18 H 0.075 0.925 19 C 0.037 3.963 20 N -0.808 5.808 21 Si 1.071 2.929 22 H -0.273 1.273 23 H -0.276 1.276 24 H -0.274 1.274 25 C 0.088 3.912 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.298 0.702 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 -2.167 -10.685 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.293 6.293 4 C 0.017 3.983 5 H 0.094 0.906 6 C -0.164 4.164 7 C -0.018 4.018 8 N -0.366 5.366 9 C 0.388 3.612 10 O -0.405 6.405 11 C -0.249 4.249 12 C -0.074 4.074 13 C -0.269 4.269 14 C -0.096 4.096 15 C -0.218 4.218 16 C 0.126 3.874 17 C -0.516 4.516 18 H 0.093 0.907 19 C -0.183 4.183 20 N -0.433 5.433 21 Si 0.895 3.105 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.035 4.035 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.101 -2.419 -8.479 14.177 hybrid contribution -0.216 -0.271 -1.838 1.870 sum -11.317 -2.690 -10.317 15.548 Atomic orbital electron populations 1.21738 0.93724 1.02197 1.03120 1.22537 0.95568 0.83857 1.00297 1.87908 1.20050 1.26436 1.94857 1.23244 0.81077 0.98401 0.95580 0.90591 1.22729 0.96607 0.96709 1.00344 1.22091 0.96426 0.96625 0.86613 1.48431 1.14661 1.47797 1.25694 1.18186 0.81531 0.81593 0.79858 1.90716 1.80977 1.38559 1.30293 1.19484 1.01686 1.08538 0.95214 1.20867 0.95601 0.96340 0.94620 1.20292 1.00890 1.08198 0.97471 1.20779 0.97654 0.97803 0.93339 1.21255 1.01070 1.03510 0.95997 1.17462 0.90148 0.87561 0.92231 1.20527 0.96610 1.42793 0.91667 0.90680 1.27044 0.93605 0.91677 1.05995 1.70373 1.13752 1.29541 1.29637 0.83550 0.76190 0.77850 0.72951 1.19789 1.20109 1.19971 1.22484 0.86004 0.98354 0.96697 0.91935 0.91157 0.91748 0.93350 0.93097 0.89770 0.89638 0.90921 0.91039 0.88345 0.88692 0.88692 0.87287 0.88786 0.90815 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.05 0.53 6.54 37.15 0.24 0.77 16 3 O -0.37 -4.61 10.15 -35.23 -0.36 -4.96 16 4 C 0.08 0.95 3.49 -24.58 -0.09 0.87 16 5 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 6 C -0.13 -1.47 6.68 -24.89 -0.17 -1.63 16 7 C 0.11 1.56 5.65 -3.05 -0.02 1.54 16 8 N -0.63 -11.82 3.33 -171.76 -0.57 -12.40 16 9 C 0.60 14.27 6.91 -12.52 -0.09 14.18 16 10 O -0.53 -14.63 15.90 5.27 0.08 -14.55 16 11 C -0.24 -6.00 5.53 -104.36 -0.58 -6.58 16 12 C -0.06 -1.18 8.51 -39.22 -0.33 -1.51 16 13 C -0.25 -5.14 10.03 -39.37 -0.39 -5.53 16 14 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 15 C -0.20 -4.96 7.72 -38.89 -0.30 -5.26 16 16 C 0.13 3.48 5.17 -106.54 -0.55 2.93 16 17 C -0.49 -13.60 7.47 -37.81 -0.28 -13.88 16 18 H 0.08 2.15 7.41 -52.49 -0.39 1.76 16 19 C 0.04 0.98 5.21 -17.30 -0.09 0.89 16 20 N -0.81 -22.33 12.65 55.56 0.70 -21.63 16 21 Si 1.07 23.16 29.95 -169.99 -5.09 18.07 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.09 1.43 6.66 -2.53 -0.02 1.41 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.11 -51.92 -0.42 -0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.99 5.65 -51.93 -0.29 0.70 16 35 H 0.10 1.78 5.55 -52.49 -0.29 1.49 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.11 2.77 6.98 -52.49 -0.37 2.41 16 39 H 0.30 8.39 6.15 -40.82 -0.25 8.14 16 40 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -31.40 336.17 -8.70 -40.11 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.86 Total: 5.00 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.67 Total: -14.70 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.13 Total: -34.03 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.27 Total: -19.51 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.09 Total: 18.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.40 -8.70 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885325897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.125 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds