Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47365 * 2 1 4 4 C 1.42900 * 114.00104 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.91806 * 32.44304 * 4 3 2 6 6 C 1.55157 * 111.00185 * 156.35263 * 4 3 2 7 7 C 1.54340 * 103.01995 * 153.37878 * 6 4 3 8 8 N 1.47027 * 107.26384 * 338.13850 * 7 6 4 9 9 C 1.34771 * 125.64349 * 178.85117 * 8 7 6 10 10 O 1.21613 * 119.99436 * 183.79130 * 9 8 7 11 11 C 1.47432 * 120.00390 * 3.78696 * 9 8 7 12 12 C 1.39230 * 120.28184 * 316.34344 * 11 9 8 13 13 C 1.38217 * 120.08865 * 180.27443 * 12 11 9 14 14 C 1.38826 * 120.67886 * 359.76670 * 13 12 11 15 15 C 1.37594 * 120.57011 * 359.95493 * 14 13 12 16 16 C 1.40705 * 119.88310 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.33053 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00060 * 141.18651 * 17 16 15 19 19 C 1.40274 * 119.99529 * 321.18443 * 17 16 15 20 20 N 1.30634 * 120.00069 * 349.00269 * 19 17 16 21 21 Si 1.86800 * 119.99530 * 168.72855 * 19 17 16 22 22 H 1.48505 * 109.46851 * 180.27759 * 21 19 17 23 23 H 1.48500 * 109.47117 * 300.27076 * 21 19 17 24 24 H 1.48501 * 109.47325 * 60.27758 * 21 19 17 25 25 C 1.47422 * 108.70358 * 358.58657 * 8 7 6 26 26 H 1.09002 * 109.47253 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47267 * 299.99619 * 1 2 3 29 29 H 1.09007 * 109.47384 * 240.00189 * 2 1 3 30 30 H 1.09003 * 109.47525 * 120.00451 * 2 1 3 31 31 H 1.09004 * 110.71620 * 271.93197 * 6 4 3 32 32 H 1.08992 * 110.72392 * 35.20823 * 6 4 3 33 33 H 1.08998 * 109.98967 * 218.66155 * 7 6 4 34 34 H 1.09004 * 109.77743 * 97.49032 * 7 6 4 35 35 H 1.07995 * 119.95073 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.66020 * 179.74099 * 13 12 11 37 37 H 1.08004 * 119.71573 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.05801 * 180.02562 * 15 14 13 39 39 H 0.96995 * 119.99637 * 353.77907 * 20 19 17 40 40 H 1.09002 * 110.36791 * 143.19793 * 25 8 7 41 41 H 1.09007 * 110.36409 * 265.41198 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8864 0.6344 -0.5471 6 6 3.8802 2.8268 -0.5816 7 6 5.2458 3.0615 0.0982 8 7 5.2725 2.2418 1.3184 9 6 6.3037 2.1513 2.1814 10 8 6.2415 1.3866 3.1251 11 6 7.5071 2.9791 1.9815 12 6 8.0575 3.1224 0.7107 13 6 9.1892 3.8949 0.5288 14 6 9.7872 4.5393 1.6032 15 6 9.2630 4.4213 2.8699 16 6 8.1115 3.6412 3.0822 17 6 7.5665 3.5142 4.3753 18 1 6.4952 3.5064 4.5114 19 6 8.4156 3.3980 5.4858 20 7 9.6937 3.1916 5.3120 21 14 7.7196 3.5461 7.2130 22 1 8.8159 3.3940 8.2031 23 1 7.0847 4.8783 7.3783 24 1 6.7051 2.4837 7.4307 25 6 3.9820 1.5403 1.4450 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9909 2.7678 -1.6644 32 1 3.1767 3.6127 -0.3069 33 1 5.3575 4.1145 0.3564 34 1 6.0490 2.7547 -0.5720 35 1 7.6024 2.6254 -0.1332 36 1 9.6128 3.9979 -0.4594 37 1 10.6713 5.1388 1.4434 38 1 9.7347 4.9265 3.6998 39 1 10.0420 3.0288 4.4215 40 1 4.1324 0.5394 1.8497 41 1 3.3025 2.1078 2.0809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885325897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -82.570103 kcal Electronic energy + Delta-G solvation = -23004.412668 eV Core-core repulsion = 19654.987678 eV Total energy + Delta-G solvation = -3349.424990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31172 -39.76840 -38.73834 -37.40895 -35.78466 -33.02283 -31.95066 -31.31941 -31.12913 -29.34819 -27.19188 -25.32903 -23.76893 -23.07768 -22.97129 -22.11455 -20.76880 -19.54476 -18.33876 -18.15152 -16.96734 -16.79372 -16.55785 -16.38636 -15.90269 -15.54757 -15.45599 -15.05492 -14.76136 -14.45698 -14.16993 -14.01171 -13.88798 -13.76735 -13.32305 -13.07448 -13.01023 -12.76661 -12.64331 -12.52342 -12.32559 -12.10063 -12.02786 -11.86014 -11.66177 -11.30325 -11.06914 -10.75810 -10.56475 -9.77252 -9.59753 -9.47916 -9.10373 -6.54132 0.43222 0.85337 1.42235 1.56957 1.72213 1.83754 2.03611 2.29467 2.67769 2.75372 3.38301 3.43255 3.57032 3.90133 3.99744 4.07069 4.17539 4.21101 4.32243 4.33712 4.41742 4.48228 4.58599 4.64243 4.71016 4.75125 4.88117 4.89881 4.94275 5.02968 5.05555 5.09143 5.27305 5.33352 5.37889 5.60960 5.70483 5.79185 5.86883 6.11586 6.18787 6.27590 6.50458 6.70009 6.85544 7.32626 8.10977 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.004637 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.439748 B = 6036.379780 C = 7349.775478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.384 6.384 4 C 0.089 3.911 5 H 0.095 0.905 6 C -0.112 4.112 7 C 0.098 3.902 8 N -0.623 5.623 9 C 0.586 3.414 10 O -0.584 6.584 11 C -0.259 4.259 12 C -0.054 4.054 13 C -0.226 4.226 14 C -0.074 4.074 15 C -0.219 4.219 16 C 0.101 3.899 17 C -0.530 4.530 18 H 0.048 0.952 19 C 0.000 4.000 20 N -0.835 5.835 21 Si 1.115 2.885 22 H -0.262 1.262 23 H -0.256 1.256 24 H -0.277 1.277 25 C 0.081 3.919 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.282 0.718 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -1.930 -14.358 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.302 6.302 4 C 0.030 3.970 5 H 0.113 0.887 6 C -0.150 4.150 7 C -0.024 4.024 8 N -0.359 5.359 9 C 0.379 3.621 10 O -0.464 6.464 11 C -0.263 4.263 12 C -0.072 4.072 13 C -0.244 4.244 14 C -0.093 4.093 15 C -0.238 4.238 16 C 0.098 3.902 17 C -0.560 4.560 18 H 0.067 0.933 19 C -0.213 4.213 20 N -0.461 5.461 21 Si 0.932 3.068 22 H -0.186 1.186 23 H -0.180 1.180 24 H -0.203 1.203 25 C -0.042 4.042 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.748 -2.150 -12.225 17.090 hybrid contribution -0.087 -0.361 -1.011 1.077 sum -11.835 -2.512 -13.236 17.932 Atomic orbital electron populations 1.21754 0.92445 1.03443 1.02862 1.22782 0.96686 0.82794 1.00893 1.87910 1.19547 1.28120 1.94673 1.23132 0.81497 0.99801 0.92532 0.88700 1.22727 0.94281 0.95897 1.02072 1.22399 0.99314 0.95563 0.85131 1.48335 1.14102 1.47595 1.25820 1.18263 0.82694 0.81138 0.80008 1.90671 1.82232 1.40826 1.32668 1.19819 1.02149 1.08113 0.96266 1.21274 0.95583 0.96078 0.94239 1.20896 0.99332 1.05157 0.99057 1.21206 0.98357 0.97494 0.92225 1.21228 1.01228 1.04143 0.97201 1.17813 0.91369 0.88312 0.92712 1.20482 0.95371 1.46729 0.93410 0.93342 1.28284 0.93433 0.90452 1.09172 1.70485 1.14307 1.32897 1.28437 0.83043 0.75852 0.78633 0.69260 1.18574 1.18008 1.20260 1.22680 0.84736 0.97030 0.99772 0.91465 0.89209 0.92704 0.91485 0.93759 0.85932 0.89527 0.91619 0.89186 0.84508 0.83919 0.85273 0.89053 0.90466 0.92257 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.77 6.54 71.98 0.47 1.24 16 3 O -0.38 -8.57 10.15 -148.98 -1.51 -10.09 16 4 C 0.09 2.02 3.49 31.99 0.11 2.13 16 5 H 0.10 1.83 7.90 -2.39 -0.02 1.81 16 6 C -0.11 -2.19 6.68 31.79 0.21 -1.98 16 7 C 0.10 2.62 5.65 86.73 0.49 3.11 16 8 N -0.62 -23.31 3.33 -815.59 -2.71 -26.02 16 9 C 0.59 28.94 6.91 86.67 0.60 29.54 16 10 O -0.58 -34.18 15.90 -4.07 -0.06 -34.25 16 11 C -0.26 -12.82 5.53 -19.70 -0.11 -12.93 16 12 C -0.05 -2.10 8.51 22.50 0.19 -1.91 16 13 C -0.23 -8.31 10.03 22.41 0.22 -8.08 16 14 C -0.07 -3.07 10.01 22.26 0.22 -2.85 16 15 C -0.22 -11.11 7.72 22.72 0.18 -10.93 16 16 C 0.10 5.64 5.17 -21.11 -0.11 5.53 16 17 C -0.53 -31.62 7.47 23.42 0.17 -31.44 16 18 H 0.05 3.02 7.41 -2.91 -0.02 2.99 16 19 C 0.00 -0.02 5.21 85.37 0.44 0.42 16 20 N -0.84 -48.69 12.65 21.88 0.28 -48.41 16 21 Si 1.11 49.14 29.95 68.60 2.05 51.19 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.08 2.63 6.66 86.86 0.58 3.21 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.93 8.11 -2.38 -0.02 0.91 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.09 5.65 -2.38 -0.01 2.07 16 35 H 0.14 4.29 5.55 -2.91 -0.02 4.27 16 36 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.88 6.98 -2.91 -0.02 4.86 16 39 H 0.28 16.85 6.15 -92.71 -0.57 16.28 16 40 H 0.06 2.07 8.00 -2.39 -0.02 2.05 16 41 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -74.65 336.17 3.68 -70.97 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.22 Total: 22.86 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.42 Total: -26.25 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.44 Total: -74.44 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.58 Total: -44.33 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Total: -74.65 3.68 -70.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885325897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.604 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds