Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.47119 * 2 1 4 4 C 1.42900 * 113.99304 * 179.97438 * 3 2 1 5 5 H 1.08992 * 110.92102 * 26.10248 * 4 3 2 6 6 C 1.55160 * 110.99983 * 149.99982 * 4 3 2 7 7 C 1.54325 * 103.10316 * 153.66254 * 6 4 3 8 8 N 1.47018 * 107.26971 * 337.71791 * 7 6 4 9 9 C 1.34779 * 125.64923 * 178.90209 * 8 7 6 10 10 O 1.21590 * 120.00015 * 174.85958 * 9 8 7 11 11 C 1.47644 * 119.99828 * 354.86115 * 9 8 7 12 12 C 1.40017 * 119.89639 * 8.00977 * 11 9 8 13 13 C 1.36316 * 120.10388 * 179.71936 * 12 11 9 14 14 C 1.40885 * 119.89389 * 0.53789 * 13 12 11 15 15 C 1.41110 * 120.10280 * 179.72014 * 14 13 12 16 16 H 1.08001 * 119.99680 * 214.82937 * 15 14 13 17 17 C 1.40221 * 119.99880 * 34.82167 * 15 14 13 18 18 N 1.30643 * 120.00351 * 355.51660 * 17 15 14 19 19 Si 1.86804 * 119.99793 * 175.51325 * 17 15 14 20 20 H 1.48513 * 109.46820 * 90.00085 * 19 17 15 21 21 H 1.48496 * 109.47438 * 209.99680 * 19 17 15 22 22 H 1.48500 * 109.47299 * 330.00462 * 19 17 15 23 23 C 1.40886 * 119.79287 * 359.74231 * 14 13 12 24 24 C 1.36324 * 119.89286 * 359.97438 * 23 14 13 25 25 C 1.47425 * 108.70578 * 358.93961 * 8 7 6 26 26 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47293 * 300.00486 * 1 2 3 28 28 H 1.09004 * 109.46843 * 59.99681 * 1 2 3 29 29 H 1.08998 * 109.47081 * 239.99808 * 2 1 3 30 30 H 1.09000 * 109.46562 * 119.99895 * 2 1 3 31 31 H 1.09000 * 110.72116 * 35.21099 * 6 4 3 32 32 H 1.08997 * 110.72302 * 272.11574 * 6 4 3 33 33 H 1.08998 * 109.87878 * 97.13390 * 7 6 4 34 34 H 1.09000 * 109.88262 * 218.29999 * 7 6 4 35 35 H 1.08000 * 119.94390 * 0.02562 * 12 11 9 36 36 H 1.08005 * 120.05033 * 180.30379 * 13 12 11 37 37 H 0.97008 * 119.99964 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.05552 * 179.97438 * 23 14 13 39 39 H 1.07999 * 119.94575 * 179.97438 * 24 23 14 40 40 H 1.09003 * 110.36592 * 142.96222 * 25 8 7 41 41 H 1.08997 * 110.36902 * 265.17897 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8912 0.5792 -0.4470 6 6 3.8867 2.7543 -0.7237 7 6 5.2494 3.0610 -0.0676 8 7 5.2656 2.3888 1.2398 9 6 6.2912 2.3960 2.1142 10 8 6.1606 1.8829 3.2087 11 6 7.5733 3.0271 1.7429 12 6 7.6713 3.7620 0.5552 13 6 8.8514 4.3513 0.2111 14 6 9.9765 4.2104 1.0472 15 6 11.2019 4.8136 0.6924 16 1 12.1341 4.3232 0.9308 17 6 11.2091 6.0495 0.0301 18 7 10.0828 6.6009 -0.3364 19 14 12.8292 6.9078 -0.3280 20 1 13.3361 6.4746 -1.6550 21 1 12.6198 8.3779 -0.3340 22 1 13.8196 6.5531 0.7201 23 6 9.8746 3.4651 2.2384 24 6 8.6887 2.8843 2.5771 25 6 3.9744 1.7046 1.4356 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1810 3.5654 -0.5443 32 1 4.0045 2.5769 -1.7927 33 1 6.0561 2.6770 -0.6919 34 1 5.3622 4.1367 0.0672 35 1 6.8092 3.8663 -0.0870 36 1 8.9247 4.9220 -0.7029 37 1 10.0879 7.4557 -0.7949 38 1 10.7345 3.3540 2.8823 39 1 8.6097 2.3124 3.4898 40 1 4.1222 0.7559 1.9516 41 1 3.2903 2.3394 1.9988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885339444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = -60.232668 kcal Electronic energy + Delta-G solvation = -22444.066223 eV Core-core repulsion = 19095.609857 eV Total energy + Delta-G solvation = -3348.456367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38255 -39.61984 -38.76878 -37.50635 -35.60489 -33.09845 -32.01266 -31.42827 -31.17710 -29.49355 -27.57011 -25.17918 -23.69402 -23.23209 -22.68170 -21.98093 -20.72580 -19.29316 -18.28744 -18.13965 -17.29043 -16.83260 -16.45845 -16.38016 -15.80520 -15.57685 -15.07739 -14.92214 -14.67806 -14.34174 -14.25558 -14.06692 -13.75943 -13.58925 -13.36647 -13.16220 -13.05865 -12.83744 -12.65299 -12.42123 -12.37244 -12.18019 -12.06290 -11.74731 -11.65942 -11.20356 -11.07733 -10.78467 -10.51721 -9.76545 -9.56038 -9.26105 -8.63977 -6.51487 0.39127 1.12689 1.40846 1.42987 1.54406 1.90394 2.08298 2.19955 2.72859 2.80176 3.39160 3.54965 3.63600 3.95172 4.04726 4.16152 4.20386 4.23304 4.34508 4.42387 4.46535 4.51258 4.57018 4.68703 4.71153 4.89860 4.95033 4.96642 5.05012 5.06933 5.09051 5.14659 5.29305 5.31039 5.36265 5.63481 5.80222 5.96479 6.02675 6.22122 6.25251 6.50149 6.58491 6.81759 6.90339 7.26110 8.27184 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.003223 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.281651 B = 8684.924227 C = 9403.482568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.384 6.384 4 C 0.087 3.913 5 H 0.094 0.906 6 C -0.120 4.120 7 C 0.091 3.909 8 N -0.619 5.619 9 C 0.582 3.418 10 O -0.605 6.605 11 C -0.277 4.277 12 C -0.096 4.096 13 C -0.186 4.186 14 C 0.097 3.903 15 C -0.481 4.481 16 H 0.081 0.919 17 C 0.032 3.968 18 N -0.817 5.817 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.241 4.241 24 C -0.043 4.043 25 C 0.086 3.914 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.292 0.708 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 -6.248 -7.086 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.302 6.302 4 C 0.028 3.972 5 H 0.112 0.888 6 C -0.157 4.157 7 C -0.031 4.031 8 N -0.353 5.353 9 C 0.378 3.622 10 O -0.490 6.490 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.205 4.205 14 C 0.094 3.906 15 C -0.510 4.510 16 H 0.099 0.901 17 C -0.184 4.184 18 N -0.442 5.442 19 Si 0.812 3.188 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.260 4.260 24 C -0.062 4.062 25 C -0.037 4.037 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.180 0.820 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.259 -6.149 -6.604 16.038 hybrid contribution 0.997 0.234 0.492 1.136 sum -12.262 -5.915 -6.111 14.922 Atomic orbital electron populations 1.21760 0.92568 1.03417 1.02826 1.22800 0.96592 0.82747 1.00991 1.87910 1.19485 1.28170 1.94651 1.23202 0.81569 0.99664 0.92754 0.88844 1.22830 0.94413 0.97201 1.01298 1.22687 0.99052 0.97932 0.83439 1.48083 1.14560 1.53157 1.19460 1.18252 0.83296 0.78074 0.82536 1.90618 1.84049 1.50820 1.23518 1.19201 0.93335 1.13710 1.01866 1.22283 0.99384 0.94427 0.95276 1.21356 0.93620 1.04044 1.01486 1.18254 0.94550 0.88204 0.89598 1.20002 0.93914 1.04255 1.32818 0.90076 1.26880 1.01922 0.97642 0.91936 1.69709 1.29299 1.16919 1.28304 0.85044 0.76705 0.77350 0.79706 1.18176 1.19159 1.18551 1.20993 0.97416 1.08599 0.99026 1.20522 0.92473 0.96144 0.97068 1.22719 0.84440 0.97258 0.99264 0.89213 0.92543 0.91741 0.91722 0.93268 0.89051 0.86561 0.89374 0.90000 0.81994 0.85708 0.89667 0.87638 0.88040 0.91727 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.04 0.70 6.49 71.98 0.47 1.17 16 3 O -0.38 -7.96 10.17 -148.98 -1.51 -9.48 16 4 C 0.09 1.84 3.57 32.16 0.11 1.95 16 5 H 0.09 1.73 7.83 -2.39 -0.02 1.71 16 6 C -0.12 -2.30 6.67 31.78 0.21 -2.09 16 7 C 0.09 2.40 4.86 86.73 0.42 2.82 16 8 N -0.62 -21.27 3.33 -830.94 -2.76 -24.04 16 9 C 0.58 25.79 7.80 86.73 0.68 26.47 16 10 O -0.61 -30.36 16.65 -4.00 -0.07 -30.42 16 11 C -0.28 -12.96 5.89 -19.93 -0.12 -13.08 16 12 C -0.10 -4.22 8.51 22.25 0.19 -4.03 16 13 C -0.19 -9.19 8.61 22.47 0.19 -9.00 16 14 C 0.10 5.09 5.55 -21.28 -0.12 4.97 16 15 C -0.48 -24.65 9.03 23.46 0.21 -24.44 16 16 H 0.08 3.99 7.85 -2.91 -0.02 3.97 16 17 C 0.03 1.51 5.42 85.35 0.46 1.98 16 18 N -0.82 -39.54 10.59 21.87 0.23 -39.31 16 19 Si 0.99 35.81 29.56 68.60 2.03 37.84 16 20 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 21 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.24 -12.13 9.73 22.47 0.22 -11.91 16 24 C -0.04 -2.10 9.52 22.25 0.21 -1.89 16 25 C 0.09 2.49 6.65 87.02 0.58 3.06 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.30 6.67 -2.39 -0.02 2.28 16 34 H 0.08 2.24 6.78 -2.39 -0.02 2.22 16 35 H 0.16 5.78 2.73 -9.24 -0.03 5.76 16 36 H 0.13 6.27 6.13 -2.91 -0.02 6.26 16 37 H 0.29 12.67 8.29 -92.70 -0.77 11.90 16 38 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.10 4.85 7.65 -2.91 -0.02 4.83 16 40 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.38 335.42 3.39 -60.99 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 1.01 Total: 29.57 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 4.46 Total: -25.13 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -2.53 Total: -63.35 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.58 Total: -39.90 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -64.38 3.39 -60.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885339444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.755 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds