Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42913 * 113.99794 * 2 1 4 4 H 1.08991 * 112.84744 * 341.19153 * 3 2 1 5 5 C 1.53776 * 113.61111 * 112.50301 * 3 2 1 6 6 C 1.53960 * 87.11079 * 139.91135 * 5 3 2 7 7 C 1.53779 * 113.60833 * 209.99995 * 3 2 1 8 8 H 1.09001 * 113.62026 * 334.64519 * 7 3 2 9 9 N 1.46501 * 113.61551 * 105.47308 * 7 3 2 10 10 C 1.46501 * 120.00093 * 62.44216 * 9 7 3 11 11 C 1.34771 * 119.99711 * 242.44179 * 9 7 3 12 12 O 1.21609 * 120.00510 * 355.17838 * 11 9 7 13 13 C 1.47438 * 119.99839 * 175.17674 * 11 9 7 14 14 C 1.39230 * 120.27935 * 50.99789 * 13 11 9 15 15 C 1.38216 * 120.08911 * 180.02562 * 14 13 11 16 16 C 1.38825 * 120.67799 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.57326 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.87483 * 0.02562 * 17 16 15 19 19 C 1.40888 * 120.32588 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00453 * 211.80672 * 19 18 17 21 21 C 1.40276 * 119.99577 * 31.80118 * 19 18 17 22 22 N 1.30632 * 120.00500 * 12.42381 * 21 19 18 23 23 Si 1.86806 * 119.99772 * 192.41937 * 21 19 18 24 24 H 1.48501 * 109.47293 * 90.00308 * 23 21 19 25 25 H 1.48502 * 109.47093 * 210.00422 * 23 21 19 26 26 H 1.48496 * 109.47131 * 330.00295 * 23 21 19 27 27 H 1.09002 * 109.47632 * 300.00197 * 1 2 3 28 28 H 1.09006 * 109.47249 * 60.00220 * 1 2 3 29 29 H 1.08995 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.61034 * 254.52369 * 5 3 2 31 31 H 1.08998 * 113.61996 * 25.34422 * 5 3 2 32 32 H 1.09001 * 113.66564 * 220.11209 * 6 5 3 33 33 H 1.08998 * 113.61739 * 89.15446 * 6 5 3 34 34 H 1.09001 * 109.47093 * 215.09815 * 10 9 7 35 35 H 1.09008 * 109.46765 * 335.09512 * 10 9 7 36 36 H 1.08991 * 109.47268 * 95.09924 * 10 9 7 37 37 H 1.07995 * 119.95591 * 0.04415 * 14 13 11 38 38 H 1.07998 * 119.65989 * 180.27508 * 15 14 13 39 39 H 1.08007 * 119.71335 * 179.97438 * 16 15 14 40 40 H 1.07994 * 120.05693 * 179.97438 * 17 16 15 41 41 H 0.96995 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7533 1.6489 1.3017 6 6 3.8252 2.3176 0.4218 7 6 3.3755 1.3719 -0.7045 8 1 3.9082 0.4210 -0.7150 9 7 3.3256 2.0106 -2.0221 10 6 2.9207 3.4135 -2.1412 11 6 3.6521 1.3075 -3.1245 12 8 4.0720 0.1711 -3.0188 13 6 3.5004 1.9161 -4.4588 14 6 4.0451 3.1695 -4.7247 15 6 3.9001 3.7366 -5.9768 16 6 3.2137 3.0686 -6.9817 17 6 2.6642 1.8287 -6.7491 18 6 2.7968 1.2297 -5.4828 19 6 2.2385 -0.0397 -5.2343 20 1 1.8752 -0.2862 -4.2476 21 6 2.1543 -0.9835 -6.2687 22 7 2.8024 -0.7878 -7.3859 23 14 1.1154 -2.5203 -6.0486 24 1 -0.2688 -2.2533 -6.5153 25 1 1.7000 -3.6309 -6.8425 26 1 1.0893 -2.8987 -4.6128 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2139 2.3478 1.9411 31 1 3.1152 0.7741 1.8418 32 1 4.8451 2.1376 0.7618 33 1 3.6263 3.3691 0.2146 34 1 2.3580 3.5521 -3.0644 35 1 2.2955 3.6847 -1.2904 36 1 3.8072 4.0474 -2.1575 37 1 4.5820 3.6992 -3.9518 38 1 4.3293 4.7073 -6.1769 39 1 3.1093 3.5265 -7.9544 40 1 2.1316 1.3166 -7.5368 41 1 2.7439 -1.4402 -8.1013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889317044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = -33.042928 kcal Electronic energy + Delta-G solvation = -23617.328882 eV Core-core repulsion = 20270.051551 eV Total energy + Delta-G solvation = -3347.277331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05166 -38.42121 -36.78419 -35.92313 -33.94942 -33.40252 -30.00583 -29.50597 -27.03878 -26.59982 -25.66900 -24.65905 -24.25456 -21.84263 -20.96850 -19.44317 -18.74508 -17.26112 -16.98056 -16.27542 -15.88839 -15.34613 -15.12282 -14.83942 -14.38058 -14.35555 -13.81850 -13.27922 -12.98008 -12.76627 -12.62618 -12.30274 -12.12746 -12.03578 -11.86188 -11.64940 -11.54686 -11.26559 -11.19004 -11.07178 -10.93402 -10.76765 -10.46611 -10.36274 -9.92452 -9.63177 -9.51383 -9.24504 -8.62676 -7.99353 -7.52877 -7.41805 -6.79210 -4.40766 2.50886 2.81939 3.09523 3.15658 3.22784 3.53392 3.91667 3.97085 4.07097 4.56834 4.61484 4.65561 4.93432 5.00142 5.30649 5.41639 5.46494 5.51963 5.55760 5.68076 5.70848 5.76635 5.81150 5.87538 5.95377 6.06719 6.12784 6.16552 6.31536 6.38855 6.58181 6.98789 7.09377 7.15605 7.22441 7.37131 7.46288 7.67710 7.86159 7.97101 8.13123 8.23157 8.56219 8.79563 8.86657 9.25281 10.16461 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.006704 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.465428 B = 4175.725458 C = 5718.903048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.049 3.951 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.150 4.150 7 C 0.131 3.869 8 H 0.123 0.877 9 N -0.619 5.619 10 C 0.085 3.915 11 C 0.583 3.417 12 O -0.531 6.531 13 C -0.251 4.251 14 C -0.061 4.061 15 C -0.246 4.246 16 C -0.095 4.095 17 C -0.153 4.153 18 C 0.148 3.852 19 C -0.434 4.434 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.789 5.789 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.259 1.259 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 6.528 11.420 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.010 4.010 4 H 0.105 0.895 5 C -0.191 4.191 6 C -0.188 4.188 7 C 0.026 3.974 8 H 0.141 0.859 9 N -0.353 5.353 10 C -0.058 4.058 11 C 0.376 3.624 12 O -0.407 6.407 13 C -0.256 4.256 14 C -0.080 4.080 15 C -0.265 4.265 16 C -0.113 4.113 17 C -0.173 4.173 18 C 0.145 3.855 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.141 4.141 22 N -0.414 5.414 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.182 1.182 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.300 5.602 11.214 12.962 hybrid contribution -0.598 -0.354 -0.022 0.695 sum -3.898 5.248 11.192 12.961 Atomic orbital electron populations 1.22759 0.81580 1.02618 0.99577 1.87990 1.19353 1.27091 1.94414 1.24448 0.95051 0.85605 0.95928 0.89522 1.23301 0.97960 1.01029 0.96777 1.23200 0.99628 0.99540 0.96437 1.22777 0.95050 0.98062 0.81522 0.85915 1.47904 1.69565 1.11973 1.05858 1.21736 0.99576 0.81952 1.02533 1.18583 0.75165 0.84754 0.83933 1.90688 1.44664 1.18659 1.86684 1.19442 1.12838 0.98733 0.94568 1.20654 0.97786 0.93474 0.96050 1.20260 1.10747 1.00862 0.94647 1.20783 0.98080 0.95535 0.96933 1.21264 1.03682 0.94089 0.98219 1.17372 0.86905 0.91506 0.89762 1.19573 1.33213 0.96679 0.96776 0.90244 1.25939 0.93874 1.00210 0.94086 1.69703 1.31497 1.35291 1.04892 0.86258 0.80026 0.80241 0.80057 1.19263 1.20086 1.18226 0.94527 0.93891 0.89875 0.91022 0.89098 0.90284 0.89402 0.90125 0.92511 0.93230 0.88903 0.89130 0.89147 0.86523 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 101.05 1.10 1.50 16 2 O -0.37 -6.13 10.71 -35.23 -0.38 -6.51 16 3 C 0.05 0.71 3.84 -25.92 -0.10 0.61 16 4 H 0.09 1.16 6.90 -51.93 -0.36 0.80 16 5 C -0.15 -1.71 7.92 -25.83 -0.20 -1.91 16 6 C -0.15 -1.77 7.47 -25.82 -0.19 -1.96 16 7 C 0.13 2.15 4.03 -67.11 -0.27 1.88 16 8 H 0.12 2.36 7.24 -51.93 -0.38 1.98 16 9 N -0.62 -11.52 3.08 -174.26 -0.54 -12.06 16 10 C 0.09 1.26 7.83 59.85 0.47 1.72 16 11 C 0.58 13.96 6.47 -12.52 -0.08 13.88 16 12 O -0.53 -14.74 15.51 5.27 0.08 -14.65 16 13 C -0.25 -6.19 4.87 -104.36 -0.51 -6.70 16 14 C -0.06 -1.32 7.82 -39.22 -0.31 -1.62 16 15 C -0.25 -5.22 10.03 -39.37 -0.39 -5.62 16 16 C -0.09 -2.13 10.01 -39.60 -0.40 -2.53 16 17 C -0.15 -3.90 8.63 -38.88 -0.34 -4.24 16 18 C 0.15 3.99 5.52 -106.54 -0.59 3.40 16 19 C -0.43 -12.02 7.83 -37.81 -0.30 -12.32 16 20 H 0.08 2.27 7.23 -52.49 -0.38 1.89 16 21 C 0.08 2.03 5.20 -17.30 -0.09 1.94 16 22 N -0.79 -20.85 11.15 55.56 0.62 -20.23 16 23 Si 0.91 19.79 29.58 -169.99 -5.03 14.77 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 26 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.92 6.47 -51.93 -0.34 0.58 16 34 H 0.08 1.32 6.33 -51.93 -0.33 0.99 16 35 H 0.06 0.66 6.17 -51.92 -0.32 0.34 16 36 H 0.05 0.66 7.16 -51.93 -0.37 0.28 16 37 H 0.09 1.74 6.50 -52.49 -0.34 1.40 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.12 3.04 6.53 -52.49 -0.34 2.69 16 41 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -31.53 333.46 -8.09 -39.61 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.67 Total: 6.00 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.20 Total: -11.96 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.08 Total: -32.29 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.30 Total: -21.16 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.53 -8.09 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889317044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.572 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds