Wall clock time and date at job start Tue Mar 31 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42913 * 113.99794 * 2 1 4 4 H 1.08991 * 112.84744 * 341.19153 * 3 2 1 5 5 C 1.53776 * 113.61111 * 112.50301 * 3 2 1 6 6 C 1.53960 * 87.11079 * 139.91135 * 5 3 2 7 7 C 1.53779 * 113.60833 * 209.99995 * 3 2 1 8 8 H 1.09001 * 113.62026 * 334.64519 * 7 3 2 9 9 N 1.46501 * 113.61551 * 105.47308 * 7 3 2 10 10 C 1.46501 * 120.00093 * 62.44216 * 9 7 3 11 11 C 1.34771 * 119.99711 * 242.44179 * 9 7 3 12 12 O 1.21609 * 120.00510 * 355.17838 * 11 9 7 13 13 C 1.47438 * 119.99839 * 175.17674 * 11 9 7 14 14 C 1.39230 * 120.27935 * 50.99789 * 13 11 9 15 15 C 1.38216 * 120.08911 * 180.02562 * 14 13 11 16 16 C 1.38825 * 120.67799 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.57326 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.87483 * 0.02562 * 17 16 15 19 19 C 1.40888 * 120.32588 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00453 * 211.80672 * 19 18 17 21 21 C 1.40276 * 119.99577 * 31.80118 * 19 18 17 22 22 N 1.30632 * 120.00500 * 12.42381 * 21 19 18 23 23 Si 1.86806 * 119.99772 * 192.41937 * 21 19 18 24 24 H 1.48501 * 109.47293 * 90.00308 * 23 21 19 25 25 H 1.48502 * 109.47093 * 210.00422 * 23 21 19 26 26 H 1.48496 * 109.47131 * 330.00295 * 23 21 19 27 27 H 1.09002 * 109.47632 * 300.00197 * 1 2 3 28 28 H 1.09006 * 109.47249 * 60.00220 * 1 2 3 29 29 H 1.08995 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.61034 * 254.52369 * 5 3 2 31 31 H 1.08998 * 113.61996 * 25.34422 * 5 3 2 32 32 H 1.09001 * 113.66564 * 220.11209 * 6 5 3 33 33 H 1.08998 * 113.61739 * 89.15446 * 6 5 3 34 34 H 1.09001 * 109.47093 * 215.09815 * 10 9 7 35 35 H 1.09008 * 109.46765 * 335.09512 * 10 9 7 36 36 H 1.08991 * 109.47268 * 95.09924 * 10 9 7 37 37 H 1.07995 * 119.95591 * 0.04415 * 14 13 11 38 38 H 1.07998 * 119.65989 * 180.27508 * 15 14 13 39 39 H 1.08007 * 119.71335 * 179.97438 * 16 15 14 40 40 H 1.07994 * 120.05693 * 179.97438 * 17 16 15 41 41 H 0.96995 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7533 1.6489 1.3017 6 6 3.8252 2.3176 0.4218 7 6 3.3755 1.3719 -0.7045 8 1 3.9082 0.4210 -0.7150 9 7 3.3256 2.0106 -2.0221 10 6 2.9207 3.4135 -2.1412 11 6 3.6521 1.3075 -3.1245 12 8 4.0720 0.1711 -3.0188 13 6 3.5004 1.9161 -4.4588 14 6 4.0451 3.1695 -4.7247 15 6 3.9001 3.7366 -5.9768 16 6 3.2137 3.0686 -6.9817 17 6 2.6642 1.8287 -6.7491 18 6 2.7968 1.2297 -5.4828 19 6 2.2385 -0.0397 -5.2343 20 1 1.8752 -0.2862 -4.2476 21 6 2.1543 -0.9835 -6.2687 22 7 2.8024 -0.7878 -7.3859 23 14 1.1154 -2.5203 -6.0486 24 1 -0.2688 -2.2533 -6.5153 25 1 1.7000 -3.6309 -6.8425 26 1 1.0893 -2.8987 -4.6128 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2139 2.3478 1.9411 31 1 3.1152 0.7741 1.8418 32 1 4.8451 2.1376 0.7618 33 1 3.6263 3.3691 0.2146 34 1 2.3580 3.5521 -3.0644 35 1 2.2955 3.6847 -1.2904 36 1 3.8072 4.0474 -2.1575 37 1 4.5820 3.6992 -3.9518 38 1 4.3293 4.7073 -6.1769 39 1 3.1093 3.5265 -7.9544 40 1 2.1316 1.3166 -7.5368 41 1 2.7439 -1.4402 -8.1013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889317044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:27 Heat of formation + Delta-G solvation = -53.143030 kcal Electronic energy + Delta-G solvation = -23618.200488 eV Core-core repulsion = 20270.051551 eV Total energy + Delta-G solvation = -3348.148937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44066 -39.97180 -38.51694 -37.27683 -35.72030 -35.00071 -31.86921 -31.31622 -28.16651 -27.80310 -27.50184 -26.08022 -25.36518 -23.47340 -22.80937 -20.77590 -20.19893 -19.15254 -18.36426 -17.74940 -17.35748 -17.13233 -16.39894 -16.27389 -15.94603 -15.82145 -15.41090 -14.86312 -14.48314 -14.28826 -14.02679 -13.74354 -13.59358 -13.53503 -13.25847 -13.15453 -12.98912 -12.82039 -12.65552 -12.57050 -12.32804 -12.22927 -12.03040 -11.82460 -11.47934 -11.38880 -11.14521 -10.72749 -10.39384 -9.49608 -9.34406 -9.29313 -8.71052 -6.42126 0.65355 0.99935 1.27779 1.40608 1.45170 1.97769 2.16014 2.27784 2.70146 2.94919 3.48408 3.61011 3.65589 3.84944 3.90068 4.12489 4.27722 4.33408 4.39934 4.48295 4.50856 4.58405 4.71207 4.74460 4.76941 4.82218 4.88394 4.93179 5.02808 5.04601 5.07070 5.20596 5.30187 5.33668 5.57712 5.76553 5.85376 5.98476 6.08972 6.26956 6.29762 6.50784 6.65249 6.84856 6.93243 7.48830 8.27021 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.006704 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.465428 B = 4175.725458 C = 5718.903048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.044 3.956 4 H 0.100 0.900 5 C -0.133 4.133 6 C -0.128 4.128 7 C 0.103 3.897 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.078 3.922 11 C 0.574 3.426 12 O -0.590 6.590 13 C -0.265 4.265 14 C -0.057 4.057 15 C -0.230 4.230 16 C -0.093 4.093 17 C -0.178 4.178 18 C 0.116 3.884 19 C -0.473 4.473 20 H 0.050 0.950 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.972 3.028 24 H -0.247 1.247 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 9.614 12.972 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.015 4.015 4 H 0.118 0.882 5 C -0.171 4.171 6 C -0.166 4.166 7 C -0.002 4.002 8 H 0.098 0.902 9 N -0.341 5.341 10 C -0.063 4.063 11 C 0.366 3.634 12 O -0.470 6.470 13 C -0.269 4.269 14 C -0.076 4.076 15 C -0.249 4.249 16 C -0.111 4.111 17 C -0.198 4.198 18 C 0.112 3.888 19 C -0.502 4.502 20 H 0.069 0.931 21 C -0.177 4.177 22 N -0.447 5.447 23 Si 0.793 3.207 24 H -0.171 1.171 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.491 8.756 12.791 15.890 hybrid contribution -0.472 -1.116 -0.444 1.290 sum -3.963 7.641 12.347 15.051 Atomic orbital electron populations 1.22910 0.80003 1.03397 1.00583 1.87949 1.21312 1.28777 1.94707 1.24653 0.94160 0.85189 0.97531 0.88205 1.23208 0.96915 1.01433 0.95520 1.23195 1.00425 0.99696 0.93319 1.23141 0.97353 0.98013 0.81649 0.90151 1.47884 1.67615 1.13234 1.05355 1.22011 1.01177 0.79674 1.03486 1.18694 0.75084 0.84352 0.85278 1.90642 1.47699 1.21075 1.87613 1.19765 1.12514 0.99864 0.94774 1.21008 0.96867 0.92310 0.97368 1.20778 1.08520 1.01993 0.93602 1.21159 0.96844 0.94311 0.98791 1.21213 1.05379 0.95643 0.97523 1.17721 0.87912 0.91843 0.91284 1.19503 1.36190 0.98394 0.96142 0.93134 1.26636 0.94682 1.02709 0.93679 1.69726 1.32668 1.36700 1.05607 0.85364 0.79468 0.76966 0.78896 1.17139 1.18519 1.20117 0.91338 0.94870 0.89452 0.87500 0.89480 0.89463 0.86802 0.91887 0.88618 0.90658 0.85404 0.84810 0.86118 0.88206 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.41 -13.73 10.71 -148.98 -1.60 -15.32 16 3 C 0.04 1.20 3.84 31.12 0.12 1.32 16 4 H 0.10 2.42 6.90 -2.39 -0.02 2.41 16 5 C -0.13 -2.55 7.92 31.18 0.25 -2.30 16 6 C -0.13 -2.62 7.47 31.19 0.23 -2.39 16 7 C 0.10 3.36 4.03 45.52 0.18 3.55 16 8 H 0.08 3.32 7.24 -2.39 -0.02 3.30 16 9 N -0.61 -22.54 3.08 -823.48 -2.54 -25.08 16 10 C 0.08 2.07 7.83 127.77 1.00 3.07 16 11 C 0.57 28.60 6.47 86.67 0.56 29.16 16 12 O -0.59 -35.16 15.51 -4.06 -0.06 -35.22 16 13 C -0.26 -13.32 4.87 -19.70 -0.10 -13.41 16 14 C -0.06 -2.35 7.82 22.50 0.18 -2.17 16 15 C -0.23 -9.00 10.03 22.41 0.22 -8.77 16 16 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 17 C -0.18 -9.31 8.63 22.72 0.20 -9.12 16 18 C 0.12 6.52 5.52 -21.11 -0.12 6.40 16 19 C -0.47 -28.14 7.83 23.41 0.18 -27.96 16 20 H 0.05 3.17 7.23 -2.91 -0.02 3.15 16 21 C 0.04 2.10 5.20 85.37 0.44 2.55 16 22 N -0.82 -45.48 11.15 21.88 0.24 -45.24 16 23 Si 0.97 42.82 29.58 68.60 2.03 44.85 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.77 6.47 -2.39 -0.02 1.76 16 34 H 0.06 1.93 6.33 -2.39 -0.02 1.92 16 35 H 0.10 1.80 6.17 -2.38 -0.01 1.79 16 36 H 0.07 1.65 7.16 -2.39 -0.02 1.63 16 37 H 0.13 4.30 6.50 -2.91 -0.02 4.28 16 38 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.10 5.45 6.53 -2.91 -0.02 5.43 16 41 H 0.29 14.47 8.29 -92.71 -0.77 13.70 16 Total: -1.00 -76.41 333.46 3.92 -72.49 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.03 Total: 25.49 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.81 Total: -21.96 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -2.29 Total: -70.32 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -1.66 Total: -50.55 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.41 3.92 -72.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889317044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.346 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds