Wall clock time and date at job start Tue Mar 31 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.09002 * 112.91150 * 341.24904 * 3 2 1 5 5 C 1.53778 * 113.61677 * 112.50157 * 3 2 1 6 6 C 1.53774 * 87.08352 * 139.97682 * 5 3 2 7 7 C 1.53781 * 87.08373 * 334.56659 * 6 5 3 8 8 H 1.08998 * 113.61895 * 270.79982 * 7 6 5 9 9 N 1.46501 * 113.61479 * 139.97758 * 7 6 5 10 10 C 1.46501 * 119.99701 * 306.78372 * 9 7 6 11 11 C 1.34773 * 119.99915 * 126.78177 * 9 7 6 12 12 O 1.21581 * 120.00252 * 7.83044 * 11 9 7 13 13 C 1.47647 * 119.99682 * 187.83043 * 11 9 7 14 14 C 1.40006 * 119.89468 * 213.32976 * 13 11 9 15 15 C 1.36315 * 120.10892 * 179.72608 * 14 13 11 16 16 C 1.40891 * 119.88978 * 0.25526 * 15 14 13 17 17 C 1.41110 * 120.09900 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99562 * 211.09467 * 17 16 15 19 19 C 1.40224 * 120.00519 * 31.09397 * 17 16 15 20 20 N 1.30644 * 119.99817 * 12.20985 * 19 17 16 21 21 Si 1.86795 * 120.00104 * 192.20670 * 19 17 16 22 22 H 1.48501 * 109.47227 * 90.00017 * 21 19 17 23 23 H 1.48500 * 109.47312 * 210.00283 * 21 19 17 24 24 H 1.48506 * 109.47122 * 330.00078 * 21 19 17 25 25 C 1.40881 * 119.79113 * 0.02562 * 16 15 14 26 26 C 1.36314 * 119.89704 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47397 * 300.00446 * 1 2 3 29 29 H 1.09003 * 109.46972 * 60.00386 * 1 2 3 30 30 H 1.09011 * 113.61252 * 25.43061 * 5 3 2 31 31 H 1.09001 * 113.61778 * 254.52960 * 5 3 2 32 32 H 1.08999 * 113.61700 * 220.02101 * 6 5 3 33 33 H 1.09001 * 113.69260 * 89.13249 * 6 5 3 34 34 H 1.09003 * 109.47023 * 209.33353 * 10 9 7 35 35 H 1.09000 * 109.47667 * 329.32700 * 10 9 7 36 36 H 1.09005 * 109.47344 * 89.33162 * 10 9 7 37 37 H 1.08005 * 119.95035 * 0.02562 * 14 13 11 38 38 H 1.08008 * 120.05639 * 180.23111 * 15 14 13 39 39 H 0.96994 * 120.00335 * 180.02562 * 20 19 17 40 40 H 1.08008 * 120.04985 * 180.02562 * 25 16 15 41 41 H 1.07999 * 119.94903 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 -0.3227 5 6 2.7534 1.6490 1.3017 6 6 3.8226 2.3182 0.4222 7 6 3.3756 1.3719 -0.7045 8 1 3.9099 0.4219 -0.7146 9 7 3.3257 2.0105 -2.0220 10 6 2.5625 3.2471 -2.2082 11 6 3.9819 1.4604 -3.0628 12 8 4.4956 0.3646 -2.9470 13 6 4.0769 2.1887 -4.3437 14 6 4.0884 1.4792 -5.5506 15 6 4.1704 2.1474 -6.7359 16 6 4.2491 3.5541 -6.7448 17 6 4.3346 4.2503 -7.9693 18 1 4.8729 5.1851 -8.0224 19 6 3.7209 3.7285 -9.1170 20 7 2.8772 2.7364 -9.0128 21 14 4.1094 4.4518 -10.7948 22 1 5.2652 3.7326 -11.3883 23 1 2.9275 4.3069 -11.6821 24 1 4.4445 5.8911 -10.6478 25 6 4.2432 4.2633 -5.5276 26 6 4.1609 3.5863 -4.3472 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.1166 0.7741 1.8411 31 1 2.2140 2.3478 1.9411 32 1 4.8425 2.1400 0.7631 33 1 3.6236 3.3695 0.2143 34 1 2.1983 3.2983 -3.2343 35 1 1.7161 3.2587 -1.5214 36 1 3.2050 4.1044 -2.0074 37 1 4.0273 0.4009 -5.5428 38 1 4.1753 1.5994 -7.6666 39 1 2.4529 2.3752 -9.8067 40 1 4.3030 5.3417 -5.5296 41 1 4.1559 4.1291 -3.4136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889340161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:42 Heat of formation + Delta-G solvation = -32.517489 kcal Electronic energy + Delta-G solvation = -22788.598211 eV Core-core repulsion = 19441.343664 eV Total energy + Delta-G solvation = -3347.254546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25163 -38.59362 -37.05770 -36.13740 -34.16980 -33.54326 -30.08531 -29.57711 -27.13765 -26.89139 -26.27025 -24.51166 -24.41654 -21.65926 -21.00045 -19.62244 -18.93066 -17.53039 -17.18943 -16.50095 -16.05591 -15.38614 -15.32263 -15.00890 -14.65595 -14.19340 -13.94723 -13.34638 -13.16058 -12.94068 -12.57094 -12.46149 -12.32497 -12.13528 -11.98863 -11.81250 -11.66464 -11.43075 -11.37859 -11.22992 -11.11872 -10.91307 -10.57694 -10.40710 -9.96747 -9.66917 -9.50021 -9.37225 -8.94224 -8.21326 -7.68199 -7.45863 -6.93198 -4.57912 2.28449 2.94760 2.98590 3.01270 3.02502 3.37071 3.73430 3.81052 3.86627 4.44581 4.50116 4.57212 4.77418 4.87846 5.13873 5.24390 5.28723 5.44262 5.52042 5.53272 5.55669 5.59928 5.70552 5.83066 5.84004 5.94525 6.06942 6.14894 6.26031 6.27371 6.80461 6.87255 6.95093 7.04217 7.12125 7.18823 7.47327 7.60227 7.76596 7.88795 8.04107 8.12801 8.45684 8.67482 8.77173 8.96395 10.00726 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.003412 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.070157 B = 8204.103364 C = 8419.254478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.048 3.952 4 H 0.092 0.908 5 C -0.152 4.152 6 C -0.151 4.151 7 C 0.130 3.870 8 H 0.125 0.875 9 N -0.615 5.615 10 C 0.080 3.920 11 C 0.576 3.424 12 O -0.562 6.562 13 C -0.273 4.273 14 C -0.043 4.043 15 C -0.171 4.171 16 C 0.130 3.870 17 C -0.453 4.453 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.783 5.783 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.231 4.231 26 C -0.059 4.059 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 1.660 13.114 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.011 4.011 4 H 0.109 0.891 5 C -0.190 4.190 6 C -0.190 4.190 7 C 0.025 3.975 8 H 0.143 0.857 9 N -0.347 5.347 10 C -0.062 4.062 11 C 0.371 3.629 12 O -0.442 6.442 13 C -0.277 4.277 14 C -0.062 4.062 15 C -0.190 4.190 16 C 0.127 3.873 17 C -0.482 4.482 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.250 4.250 26 C -0.078 4.078 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.317 0.766 13.000 13.719 hybrid contribution -0.301 0.625 -0.765 1.033 sum -4.617 1.391 12.235 13.151 Atomic orbital electron populations 1.22775 0.81477 1.02660 0.99717 1.87980 1.19428 1.27216 1.94467 1.24471 0.94877 0.85598 0.96176 0.89077 1.23260 0.97958 1.01113 0.96658 1.23167 0.99714 0.99656 0.96458 1.22824 0.95268 0.97996 0.81429 0.85716 1.47696 1.51896 1.26256 1.08887 1.21986 0.94931 0.86006 1.03316 1.18806 0.76102 0.84485 0.83483 1.90645 1.48677 1.21320 1.83548 1.18899 1.24105 0.93344 0.91335 1.20440 0.96265 0.97796 0.91719 1.20960 1.07287 0.94415 0.96356 1.17778 0.85298 0.91920 0.92268 1.19761 1.28848 1.06872 0.92697 0.89923 1.26026 0.92954 0.94049 1.01552 1.69712 1.18645 1.20147 1.32199 0.86212 0.79029 0.80508 0.80459 1.19069 1.20110 1.18444 1.20761 1.13790 0.97929 0.92539 1.20681 0.97374 0.92619 0.97091 0.89800 0.94299 0.93992 0.89035 0.90869 0.90241 0.89502 0.89440 0.92624 0.92740 0.88597 0.86448 0.90398 0.88459 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.41 16 2 O -0.37 -5.25 10.71 -35.23 -0.38 -5.63 16 3 C 0.05 0.60 3.82 -25.92 -0.10 0.50 16 4 H 0.09 1.03 5.72 -51.93 -0.30 0.73 16 5 C -0.15 -1.53 7.91 -25.92 -0.21 -1.74 16 6 C -0.15 -1.70 7.67 -25.92 -0.20 -1.90 16 7 C 0.13 1.94 4.08 -67.11 -0.27 1.67 16 8 H 0.13 2.18 7.18 -51.93 -0.37 1.81 16 9 N -0.61 -10.56 3.09 -174.18 -0.54 -11.10 16 10 C 0.08 1.13 7.82 59.85 0.47 1.60 16 11 C 0.58 12.55 7.35 -12.42 -0.09 12.46 16 12 O -0.56 -13.89 16.24 5.29 0.09 -13.80 16 13 C -0.27 -6.23 5.19 -104.73 -0.54 -6.77 16 14 C -0.04 -1.05 9.53 -39.61 -0.38 -1.43 16 15 C -0.17 -4.37 8.58 -39.27 -0.34 -4.71 16 16 C 0.13 3.31 5.52 -106.80 -0.59 2.72 16 17 C -0.45 -11.34 9.04 -37.75 -0.34 -11.69 16 18 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 19 C 0.07 1.76 5.21 -17.31 -0.09 1.67 16 20 N -0.78 -19.35 11.07 55.56 0.62 -18.73 16 21 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 C -0.23 -5.28 9.73 -39.28 -0.38 -5.67 16 26 C -0.06 -1.25 7.65 -39.61 -0.30 -1.55 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 34 H 0.09 1.40 6.18 -51.93 -0.32 1.08 16 35 H 0.06 0.62 5.83 -51.93 -0.30 0.32 16 36 H 0.05 0.69 6.64 -51.93 -0.34 0.34 16 37 H 0.10 2.31 7.96 -52.48 -0.42 1.90 16 38 H 0.12 3.09 6.45 -52.48 -0.34 2.75 16 39 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 40 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 41 H 0.10 1.79 5.28 -52.49 -0.28 1.51 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -29.49 333.71 -8.05 -37.53 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.56 Total: 7.44 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.27 Total: -13.41 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.08 Total: -29.83 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.29 Total: -19.43 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.49 -8.05 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889340161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.016 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds