Wall clock time and date at job start Tue Mar 31 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.09002 * 112.91150 * 341.24904 * 3 2 1 5 5 C 1.53778 * 113.61677 * 112.50157 * 3 2 1 6 6 C 1.53774 * 87.08352 * 139.97682 * 5 3 2 7 7 C 1.53781 * 87.08373 * 334.56659 * 6 5 3 8 8 H 1.08998 * 113.61895 * 270.79982 * 7 6 5 9 9 N 1.46501 * 113.61479 * 139.97758 * 7 6 5 10 10 C 1.46501 * 119.99701 * 306.78372 * 9 7 6 11 11 C 1.34773 * 119.99915 * 126.78177 * 9 7 6 12 12 O 1.21581 * 120.00252 * 7.83044 * 11 9 7 13 13 C 1.47647 * 119.99682 * 187.83043 * 11 9 7 14 14 C 1.40006 * 119.89468 * 213.32976 * 13 11 9 15 15 C 1.36315 * 120.10892 * 179.72608 * 14 13 11 16 16 C 1.40891 * 119.88978 * 0.25526 * 15 14 13 17 17 C 1.41110 * 120.09900 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99562 * 211.09467 * 17 16 15 19 19 C 1.40224 * 120.00519 * 31.09397 * 17 16 15 20 20 N 1.30644 * 119.99817 * 12.20985 * 19 17 16 21 21 Si 1.86795 * 120.00104 * 192.20670 * 19 17 16 22 22 H 1.48501 * 109.47227 * 90.00017 * 21 19 17 23 23 H 1.48500 * 109.47312 * 210.00283 * 21 19 17 24 24 H 1.48506 * 109.47122 * 330.00078 * 21 19 17 25 25 C 1.40881 * 119.79113 * 0.02562 * 16 15 14 26 26 C 1.36314 * 119.89704 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47397 * 300.00446 * 1 2 3 29 29 H 1.09003 * 109.46972 * 60.00386 * 1 2 3 30 30 H 1.09011 * 113.61252 * 25.43061 * 5 3 2 31 31 H 1.09001 * 113.61778 * 254.52960 * 5 3 2 32 32 H 1.08999 * 113.61700 * 220.02101 * 6 5 3 33 33 H 1.09001 * 113.69260 * 89.13249 * 6 5 3 34 34 H 1.09003 * 109.47023 * 209.33353 * 10 9 7 35 35 H 1.09000 * 109.47667 * 329.32700 * 10 9 7 36 36 H 1.09005 * 109.47344 * 89.33162 * 10 9 7 37 37 H 1.08005 * 119.95035 * 0.02562 * 14 13 11 38 38 H 1.08008 * 120.05639 * 180.23111 * 15 14 13 39 39 H 0.96994 * 120.00335 * 180.02562 * 20 19 17 40 40 H 1.08008 * 120.04985 * 180.02562 * 25 16 15 41 41 H 1.07999 * 119.94903 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 -0.3227 5 6 2.7534 1.6490 1.3017 6 6 3.8226 2.3182 0.4222 7 6 3.3756 1.3719 -0.7045 8 1 3.9099 0.4219 -0.7146 9 7 3.3257 2.0105 -2.0220 10 6 2.5625 3.2471 -2.2082 11 6 3.9819 1.4604 -3.0628 12 8 4.4956 0.3646 -2.9470 13 6 4.0769 2.1887 -4.3437 14 6 4.0884 1.4792 -5.5506 15 6 4.1704 2.1474 -6.7359 16 6 4.2491 3.5541 -6.7448 17 6 4.3346 4.2503 -7.9693 18 1 4.8729 5.1851 -8.0224 19 6 3.7209 3.7285 -9.1170 20 7 2.8772 2.7364 -9.0128 21 14 4.1094 4.4518 -10.7948 22 1 5.2652 3.7326 -11.3883 23 1 2.9275 4.3069 -11.6821 24 1 4.4445 5.8911 -10.6478 25 6 4.2432 4.2633 -5.5276 26 6 4.1609 3.5863 -4.3472 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.1166 0.7741 1.8411 31 1 2.2140 2.3478 1.9411 32 1 4.8425 2.1400 0.7631 33 1 3.6236 3.3695 0.2143 34 1 2.1983 3.2983 -3.2343 35 1 1.7161 3.2587 -1.5214 36 1 3.2050 4.1044 -2.0074 37 1 4.0273 0.4009 -5.5428 38 1 4.1753 1.5994 -7.6666 39 1 2.4529 2.3752 -9.8067 40 1 4.3030 5.3417 -5.5296 41 1 4.1559 4.1291 -3.4136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889340161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:42 Heat of formation + Delta-G solvation = -49.918460 kcal Electronic energy + Delta-G solvation = -22789.352773 eV Core-core repulsion = 19441.343664 eV Total energy + Delta-G solvation = -3348.009109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53635 -40.02499 -38.77229 -37.29029 -35.79749 -35.06785 -31.91881 -31.39287 -28.14505 -27.99067 -27.94291 -25.78967 -25.39212 -23.32477 -22.80725 -20.92276 -20.22904 -19.34727 -18.44659 -17.86967 -17.37712 -17.05760 -16.54257 -16.23129 -15.86770 -15.75110 -15.37050 -14.93833 -14.62803 -14.29424 -14.01031 -13.75111 -13.73937 -13.57127 -13.36704 -13.19552 -13.00042 -12.83077 -12.65813 -12.59638 -12.35635 -12.26597 -12.04113 -11.70665 -11.37744 -11.32449 -11.14467 -10.78522 -10.49141 -9.62412 -9.51816 -9.29337 -8.72052 -6.47701 0.48181 1.13082 1.39143 1.43382 1.53424 1.96525 2.12220 2.18844 2.75090 2.91770 3.48164 3.60861 3.65608 3.81272 3.89606 3.99607 4.18373 4.29587 4.37391 4.42576 4.52396 4.55980 4.68172 4.72878 4.79872 4.87146 4.90913 4.96378 5.00613 5.03554 5.05488 5.18285 5.26070 5.29370 5.60467 5.65776 5.77453 5.96761 6.01985 6.21885 6.28009 6.48819 6.57596 6.80404 6.90002 7.31493 8.24435 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.003412 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.070157 B = 8204.103364 C = 8419.254478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.049 3.951 4 H 0.109 0.891 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.104 3.896 8 H 0.088 0.912 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.569 3.431 12 O -0.605 6.605 13 C -0.278 4.278 14 C -0.058 4.058 15 C -0.190 4.190 16 C 0.104 3.896 17 C -0.482 4.482 18 H 0.090 0.910 19 C 0.033 3.967 20 N -0.817 5.817 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.268 1.268 24 H -0.252 1.252 25 C -0.238 4.238 26 C -0.042 4.042 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.292 0.708 40 H 0.118 0.882 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 4.228 14.947 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.010 4.010 4 H 0.127 0.873 5 C -0.172 4.172 6 C -0.175 4.175 7 C 0.000 4.000 8 H 0.106 0.894 9 N -0.335 5.335 10 C -0.069 4.069 11 C 0.363 3.637 12 O -0.489 6.489 13 C -0.283 4.283 14 C -0.078 4.078 15 C -0.209 4.209 16 C 0.101 3.899 17 C -0.511 4.511 18 H 0.108 0.892 19 C -0.183 4.183 20 N -0.442 5.442 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.175 1.175 25 C -0.257 4.257 26 C -0.061 4.061 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.218 3.362 14.886 16.128 hybrid contribution -0.089 -0.241 -1.216 1.243 sum -5.307 3.121 13.670 14.993 Atomic orbital electron populations 1.22954 0.79753 1.03621 1.00786 1.87946 1.21459 1.28391 1.94680 1.24588 0.93852 0.85563 0.96963 0.87327 1.23177 0.96903 1.01419 0.95746 1.23165 1.00369 0.99816 0.94193 1.23178 0.97830 0.97821 0.81171 0.89387 1.47709 1.50369 1.26800 1.08607 1.22207 0.96319 0.85159 1.03188 1.18724 0.76608 0.84063 0.84268 1.90617 1.50888 1.23006 1.84381 1.19145 1.23368 0.94415 0.91352 1.20499 0.97106 0.97521 0.92638 1.20850 1.09232 0.95005 0.95862 1.18127 0.86037 0.91891 0.93864 1.20064 1.29886 1.07590 0.93530 0.89219 1.26923 0.92133 0.94136 1.05140 1.69779 1.19430 1.21329 1.33635 0.85102 0.78828 0.79910 0.75338 1.18931 1.19290 1.17488 1.21029 1.13442 0.99014 0.92194 1.20972 0.95095 0.91752 0.98248 0.89135 0.91807 0.94194 0.89370 0.87669 0.90057 0.87449 0.91526 0.88997 0.90173 0.89673 0.88361 0.89729 0.86369 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.85 113.37 1.23 1.70 16 2 O -0.41 -10.93 10.71 -148.98 -1.60 -12.52 16 3 C 0.05 1.10 3.82 31.12 0.12 1.22 16 4 H 0.11 2.01 5.72 -2.39 -0.01 1.99 16 5 C -0.13 -2.22 7.91 31.12 0.25 -1.97 16 6 C -0.14 -2.63 7.67 31.12 0.24 -2.39 16 7 C 0.10 2.99 4.08 45.52 0.19 3.17 16 8 H 0.09 3.19 7.18 -2.39 -0.02 3.18 16 9 N -0.60 -19.98 3.09 -823.25 -2.54 -22.53 16 10 C 0.07 1.80 7.82 127.77 1.00 2.80 16 11 C 0.57 25.17 7.35 86.73 0.64 25.81 16 12 O -0.61 -31.26 16.24 -3.97 -0.06 -31.32 16 13 C -0.28 -12.92 5.19 -19.93 -0.10 -13.02 16 14 C -0.06 -3.01 9.53 22.25 0.21 -2.80 16 15 C -0.19 -10.22 8.58 22.47 0.19 -10.03 16 16 C 0.10 5.39 5.52 -21.28 -0.12 5.27 16 17 C -0.48 -24.48 9.04 23.46 0.21 -24.27 16 18 H 0.09 4.27 7.88 -2.91 -0.02 4.25 16 19 C 0.03 1.61 5.21 85.35 0.44 2.05 16 20 N -0.82 -41.55 11.07 21.87 0.24 -41.31 16 21 Si 0.99 36.15 29.58 68.60 2.03 38.18 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 24 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 25 C -0.24 -10.72 9.73 22.47 0.22 -10.50 16 26 C -0.04 -1.74 7.65 22.25 0.17 -1.57 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.66 7.42 -2.39 -0.02 1.64 16 34 H 0.07 1.99 6.18 -2.39 -0.01 1.97 16 35 H 0.09 1.64 5.83 -2.39 -0.01 1.63 16 36 H 0.08 1.62 6.64 -2.38 -0.02 1.61 16 37 H 0.09 4.44 7.96 -2.91 -0.02 4.41 16 38 H 0.10 5.53 6.45 -2.91 -0.02 5.52 16 39 H 0.29 13.41 8.29 -92.71 -0.77 12.64 16 40 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.14 4.52 5.28 -2.91 -0.02 4.51 16 Total: -1.00 -68.21 333.71 3.99 -64.22 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 1.04 Total: 29.80 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.89 Total: -24.52 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -2.30 Total: -63.83 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.66 Total: -43.85 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -68.21 3.99 -64.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889340161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.298 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds