Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99925 * 2 1 4 4 H 1.08996 * 112.90882 * 341.25832 * 3 2 1 5 5 C 1.54055 * 113.69251 * 112.57932 * 3 2 1 6 6 C 1.53787 * 87.07611 * 139.95099 * 5 3 2 7 7 C 1.53777 * 113.61541 * 210.00090 * 3 2 1 8 8 H 1.09002 * 113.61132 * 105.39282 * 7 3 2 9 9 N 1.46491 * 113.61752 * 334.57181 * 7 3 2 10 10 C 1.46501 * 120.00217 * 260.72942 * 9 7 3 11 11 C 1.34778 * 120.00354 * 80.72660 * 9 7 3 12 12 O 1.21591 * 119.99856 * 6.97775 * 11 9 7 13 13 C 1.47642 * 120.00556 * 186.97621 * 11 9 7 14 14 C 1.40011 * 119.88910 * 326.07279 * 13 11 9 15 15 C 1.36325 * 120.09943 * 179.71209 * 14 13 11 16 16 C 1.40887 * 119.89155 * 0.56295 * 15 14 13 17 17 C 1.41111 * 120.10161 * 179.73854 * 16 15 14 18 18 H 1.08001 * 120.00167 * 199.63943 * 17 16 15 19 19 C 1.40229 * 119.99978 * 19.63530 * 17 16 15 20 20 N 1.30647 * 119.99975 * 20.79326 * 19 17 16 21 21 Si 1.86803 * 119.99944 * 200.78413 * 19 17 16 22 22 H 1.48498 * 109.46877 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46881 * 120.00497 * 21 19 17 24 24 H 1.48496 * 109.46897 * 240.00455 * 21 19 17 25 25 C 1.40881 * 119.79572 * 359.70988 * 16 15 14 26 26 C 1.36318 * 119.89293 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47169 * 299.99174 * 1 2 3 29 29 H 1.08994 * 109.47594 * 59.99499 * 1 2 3 30 30 H 1.08998 * 113.61573 * 25.40221 * 5 3 2 31 31 H 1.09003 * 113.69583 * 254.50499 * 5 3 2 32 32 H 1.08999 * 113.61027 * 220.02319 * 6 5 3 33 33 H 1.08996 * 113.68808 * 89.12893 * 6 5 3 34 34 H 1.09001 * 109.47073 * 271.00154 * 10 9 7 35 35 H 1.09007 * 109.46788 * 30.99506 * 10 9 7 36 36 H 1.09001 * 109.47481 * 150.99820 * 10 9 7 37 37 H 1.07995 * 119.95452 * 359.97438 * 14 13 11 38 38 H 1.08002 * 120.05004 * 180.26925 * 15 14 13 39 39 H 0.97001 * 120.00286 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.05570 * 179.97438 * 25 16 15 41 41 H 1.08001 * 119.95353 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 -0.3226 5 6 2.7568 1.6507 1.3026 6 6 3.8246 2.3193 0.4206 7 6 3.3755 1.3720 -0.7045 8 1 3.3380 1.8460 -1.6854 9 7 4.0922 0.0944 -0.7171 10 6 5.1515 -0.1609 0.2622 11 6 3.7772 -0.8461 -1.6295 12 8 2.9898 -0.5898 -2.5199 13 6 4.3881 -2.1878 -1.5481 14 6 5.7008 -2.3295 -1.0822 15 6 6.2671 -3.5668 -0.9997 16 6 5.5334 -4.7026 -1.3953 17 6 6.1171 -5.9849 -1.3170 18 1 5.7080 -6.8008 -1.8944 19 6 7.2286 -6.2000 -0.4894 20 7 7.4803 -5.3767 0.4934 21 14 8.3491 -7.6637 -0.7919 22 1 7.8499 -8.4366 -1.9574 23 1 9.7264 -7.1834 -1.0701 24 1 8.3619 -8.5341 0.4111 25 6 4.2149 -4.5543 -1.8689 26 6 3.6551 -3.3135 -1.9427 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.1210 0.7764 1.8420 31 1 2.2195 2.3499 1.9433 32 1 4.8450 2.1414 0.7599 33 1 3.6249 3.3703 0.2121 34 1 6.1050 0.1875 -0.1348 35 1 4.9270 0.3706 1.1871 36 1 5.2106 -1.2306 0.4630 37 1 6.2642 -1.4578 -0.7837 38 1 7.2782 -3.6757 -0.6361 39 1 8.2493 -5.5252 1.0656 40 1 3.6487 -5.4220 -2.1736 41 1 2.6442 -3.1987 -2.3052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889340162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = -32.718751 kcal Electronic energy + Delta-G solvation = -23337.063003 eV Core-core repulsion = 19989.799729 eV Total energy + Delta-G solvation = -3347.263274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58320 -39.89003 -38.60192 -37.31781 -35.77096 -34.91015 -31.86996 -31.31164 -28.54192 -27.94305 -27.68364 -25.88294 -25.07486 -23.44876 -22.72915 -21.32444 -19.67000 -19.31426 -18.26528 -17.82395 -17.28531 -17.19935 -16.38720 -16.14530 -15.87990 -15.58326 -15.36516 -14.80751 -14.71949 -14.36194 -14.31667 -13.87124 -13.73507 -13.57556 -13.26254 -13.07245 -12.82887 -12.66643 -12.61969 -12.47938 -12.20510 -12.00297 -11.76457 -11.72534 -11.56548 -11.28847 -10.97585 -10.54144 -10.48595 -9.51026 -9.46455 -9.29954 -8.76830 -6.43268 0.58784 1.16995 1.39497 1.44447 1.56043 2.05335 2.17396 2.22749 2.75125 3.06667 3.45142 3.62742 3.71004 3.81914 4.03858 4.18647 4.20493 4.37619 4.43174 4.47123 4.48221 4.51045 4.64066 4.71516 4.78451 4.85670 4.92089 4.95778 5.04746 5.05630 5.12984 5.22353 5.28877 5.35416 5.61148 5.74148 5.87614 6.01354 6.05081 6.25327 6.42268 6.57676 6.60884 6.81358 6.93899 7.49598 8.16902 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.004032 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.880257 B = 6942.017849 C = 7360.628852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.040 3.960 4 H 0.108 0.892 5 C -0.145 4.145 6 C -0.126 4.126 7 C 0.107 3.893 8 H 0.072 0.928 9 N -0.590 5.590 10 C 0.063 3.937 11 C 0.583 3.417 12 O -0.599 6.599 13 C -0.289 4.289 14 C -0.065 4.065 15 C -0.205 4.205 16 C 0.097 3.903 17 C -0.475 4.475 18 H 0.081 0.919 19 C 0.041 3.959 20 N -0.793 5.793 21 Si 0.986 3.014 22 H -0.260 1.260 23 H -0.259 1.259 24 H -0.262 1.262 25 C -0.257 4.257 26 C -0.035 4.035 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.297 0.703 40 H 0.100 0.900 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 12.625 5.755 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.315 6.315 3 C -0.019 4.019 4 H 0.126 0.874 5 C -0.183 4.183 6 C -0.163 4.163 7 C 0.003 3.997 8 H 0.090 0.910 9 N -0.321 5.321 10 C -0.079 4.079 11 C 0.377 3.623 12 O -0.483 6.483 13 C -0.293 4.293 14 C -0.084 4.084 15 C -0.224 4.224 16 C 0.094 3.906 17 C -0.502 4.502 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.416 5.416 21 Si 0.805 3.195 22 H -0.183 1.183 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.277 4.277 26 C -0.055 4.055 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.844 12.660 5.536 14.107 hybrid contribution -0.111 -0.744 -0.291 0.806 sum -2.955 11.916 5.246 13.350 Atomic orbital electron populations 1.22831 0.80591 1.02707 1.00451 1.88041 1.20627 1.28266 1.94544 1.24532 0.94131 0.85497 0.97724 0.87384 1.23475 0.97579 1.00760 0.96469 1.23132 1.00583 0.99185 0.93372 1.22498 0.92574 0.84994 0.99620 0.90964 1.47120 1.37372 1.15017 1.32633 1.22499 0.89504 1.03262 0.92609 1.18347 0.79485 0.84380 0.80104 1.90569 1.39113 1.81787 1.36800 1.19156 0.98096 0.92101 1.19927 1.21243 0.93637 0.97793 0.95718 1.21130 1.00799 0.91672 1.08830 1.18105 0.90449 0.94307 0.87727 1.20101 1.11565 0.96108 1.22468 0.90069 1.26901 0.97984 1.00867 0.92128 1.69766 1.25113 1.36054 1.10649 0.85100 0.77648 0.77048 0.79663 1.18325 1.18359 1.18607 1.20756 0.96472 0.95963 1.14480 1.20354 0.97519 0.92380 0.95207 0.90611 0.92097 0.94016 0.90664 0.88604 0.88640 0.85759 0.91175 0.88937 0.90817 0.84700 0.86226 0.89126 0.88195 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.85 113.37 1.23 2.02 16 2 O -0.40 -13.53 9.54 -148.98 -1.42 -14.95 16 3 C 0.04 1.05 4.26 31.21 0.13 1.18 16 4 H 0.11 2.26 7.87 -2.39 -0.02 2.24 16 5 C -0.15 -2.86 7.47 31.22 0.23 -2.62 16 6 C -0.13 -2.18 7.20 31.12 0.22 -1.96 16 7 C 0.11 3.05 3.94 45.52 0.18 3.23 16 8 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 9 N -0.59 -20.92 2.78 -823.27 -2.29 -23.20 16 10 C 0.06 1.85 7.75 127.77 0.99 2.84 16 11 C 0.58 26.66 6.58 86.73 0.57 27.23 16 12 O -0.60 -30.75 16.70 -4.00 -0.07 -30.82 16 13 C -0.29 -14.12 5.48 -19.93 -0.11 -14.23 16 14 C -0.07 -3.03 7.37 22.25 0.16 -2.86 16 15 C -0.21 -10.48 8.69 22.47 0.20 -10.28 16 16 C 0.10 5.25 5.62 -21.28 -0.12 5.13 16 17 C -0.48 -24.77 9.05 23.46 0.21 -24.56 16 18 H 0.08 4.10 7.93 -2.91 -0.02 4.08 16 19 C 0.04 1.91 5.12 85.35 0.44 2.35 16 20 N -0.79 -37.93 10.80 21.87 0.24 -37.70 16 21 Si 0.99 35.32 29.61 68.60 2.03 37.35 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 24 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 25 C -0.26 -13.47 9.73 22.47 0.22 -13.26 16 26 C -0.04 -1.82 9.53 22.25 0.21 -1.61 16 27 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.77 6.93 -2.39 -0.02 1.75 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.52 6.26 -2.39 -0.01 1.50 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.79 7.34 -2.39 -0.02 1.78 16 35 H 0.09 2.13 4.89 -2.38 -0.01 2.12 16 36 H 0.07 2.63 4.89 -2.39 -0.01 2.62 16 37 H 0.14 5.26 4.81 -2.91 -0.01 5.24 16 38 H 0.12 6.13 5.89 -2.91 -0.02 6.11 16 39 H 0.30 12.49 8.29 -92.71 -0.77 11.73 16 40 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.09 4.65 7.97 -2.91 -0.02 4.63 16 Total: -1.00 -68.12 329.28 4.31 -63.81 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 1.04 Total: 32.89 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.77 Total: -27.39 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -2.05 Total: -60.90 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -1.49 Total: -45.76 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Total: -68.12 4.31 -63.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889340162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.096 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds