Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99780 * 2 1 4 4 H 1.08996 * 112.85332 * 20.33689 * 3 2 1 5 5 C 1.53779 * 113.61482 * 249.13662 * 3 2 1 6 6 C 1.53957 * 87.02068 * 220.04903 * 5 3 2 7 7 C 1.53782 * 113.61005 * 151.52910 * 3 2 1 8 8 H 1.08996 * 113.61773 * 25.43611 * 7 3 2 9 9 N 1.46498 * 113.61771 * 254.61049 * 7 3 2 10 10 C 1.46502 * 120.00066 * 305.99370 * 9 7 3 11 11 C 1.34774 * 120.00276 * 125.98281 * 9 7 3 12 12 O 1.21592 * 119.99430 * 9.16192 * 11 9 7 13 13 C 1.47632 * 120.00289 * 189.16306 * 11 9 7 14 14 C 1.40013 * 119.89849 * 341.66846 * 13 11 9 15 15 C 1.36317 * 120.11103 * 179.76103 * 14 13 11 16 16 C 1.40890 * 119.88713 * 0.51691 * 15 14 13 17 17 C 1.41110 * 120.09803 * 179.71884 * 16 15 14 18 18 H 1.08008 * 119.99645 * 160.62374 * 17 16 15 19 19 C 1.40227 * 120.00503 * 340.62063 * 17 16 15 20 20 N 1.30650 * 119.99456 * 329.68024 * 19 17 16 21 21 Si 1.86798 * 120.00318 * 149.67926 * 19 17 16 22 22 H 1.48498 * 109.46745 * 94.99232 * 21 19 17 23 23 H 1.48500 * 109.47158 * 214.99106 * 21 19 17 24 24 H 1.48494 * 109.46946 * 334.99404 * 21 19 17 25 25 C 1.40885 * 119.79459 * 359.74195 * 16 15 14 26 26 C 1.36311 * 119.89611 * 359.97438 * 25 16 15 27 27 H 1.08995 * 109.47022 * 60.00098 * 1 2 3 28 28 H 1.08997 * 109.46910 * 300.00006 * 1 2 3 29 29 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 30 30 H 1.08999 * 113.61702 * 334.56965 * 5 3 2 31 31 H 1.08999 * 113.61430 * 105.47127 * 5 3 2 32 32 H 1.08995 * 113.54059 * 270.81424 * 6 5 3 33 33 H 1.09005 * 113.74454 * 139.94261 * 6 5 3 34 34 H 1.09000 * 109.47090 * 7.98623 * 10 9 7 35 35 H 1.08992 * 109.47487 * 127.98695 * 10 9 7 36 36 H 1.09000 * 109.47018 * 247.99051 * 10 9 7 37 37 H 1.08001 * 119.94312 * 0.02693 * 14 13 11 38 38 H 1.08000 * 120.05747 * 180.23769 * 15 14 13 39 39 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.05178 * 180.02562 * 25 16 15 41 41 H 1.07994 * 119.95146 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3220 2.0753 0.3491 5 6 2.7192 1.6642 -1.3166 6 6 3.8120 2.3230 -0.4552 7 6 3.3923 1.3644 0.6717 8 1 3.9255 0.4139 0.6576 9 7 3.3743 1.9870 1.9977 10 6 2.7991 3.3231 2.1719 11 6 3.8868 1.3306 3.0574 12 8 4.5109 0.3005 2.8906 13 6 3.6903 1.8622 4.4206 14 6 3.3261 3.2020 4.6015 15 6 3.1388 3.6961 5.8580 16 6 3.3230 2.8591 6.9762 17 6 3.1361 3.3675 8.2792 18 1 2.9663 2.6908 9.1037 19 6 3.1709 4.7513 8.5037 20 7 3.9134 5.5169 7.7491 21 14 2.1556 5.4999 9.8814 22 1 2.9972 5.6393 11.0969 23 1 1.6640 6.8375 9.4635 24 1 0.9985 4.6180 10.1789 25 6 3.6948 1.5131 6.7895 26 6 3.8742 1.0264 5.5289 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0680 0.7958 -1.8754 31 1 2.1633 2.3703 -1.9335 32 1 3.6167 3.3718 -0.2317 33 1 4.8238 2.1496 -0.8218 34 1 2.3124 3.6325 1.2470 35 1 2.0662 3.3008 2.9783 36 1 3.5908 4.0300 2.4199 37 1 3.1891 3.8439 3.7438 38 1 2.8541 4.7287 5.9964 39 1 3.9378 6.4741 7.9046 40 1 3.8367 0.8677 7.6437 41 1 4.1596 -0.0051 5.3847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889340165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = -7.740218 kcal Electronic energy + Delta-G solvation = -22888.259272 eV Core-core repulsion = 19542.079149 eV Total energy + Delta-G solvation = -3346.180123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25636 -38.57796 -37.00015 -36.13201 -34.31299 -33.68414 -30.21079 -29.53687 -27.20100 -26.93350 -26.28697 -24.57238 -24.33623 -21.62496 -20.97562 -19.60954 -19.04222 -17.52278 -17.13028 -16.44123 -15.89898 -15.50045 -15.33410 -14.97785 -14.61594 -14.40239 -13.91672 -13.21688 -13.17390 -13.04802 -12.59042 -12.51897 -12.37440 -12.28592 -12.02927 -11.73855 -11.49461 -11.36008 -11.21315 -11.14769 -11.02050 -10.82194 -10.63717 -10.43459 -10.01704 -9.67138 -9.39174 -9.11554 -8.79900 -8.18518 -7.66963 -7.56996 -7.15021 -4.55579 2.29759 2.86666 2.92756 3.01210 3.07122 3.41142 3.71327 3.78655 3.92197 4.44132 4.47336 4.57192 4.82554 4.89120 5.19306 5.25134 5.30784 5.36528 5.53598 5.57659 5.58523 5.63325 5.75470 5.82206 5.86515 5.94614 6.03789 6.20523 6.28739 6.35573 6.76816 6.82748 6.95473 7.08570 7.16510 7.21363 7.45699 7.66427 7.80037 7.89947 8.06134 8.14929 8.39931 8.63714 8.79653 9.06571 9.78013 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.003630 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.955354 B = 7710.887692 C = 7838.253060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.049 3.951 4 H 0.088 0.912 5 C -0.153 4.153 6 C -0.151 4.151 7 C 0.132 3.868 8 H 0.125 0.875 9 N -0.616 5.616 10 C 0.074 3.926 11 C 0.575 3.425 12 O -0.570 6.570 13 C -0.289 4.289 14 C -0.102 4.102 15 C -0.194 4.194 16 C 0.128 3.872 17 C -0.446 4.446 18 H 0.086 0.914 19 C 0.084 3.916 20 N -0.753 5.753 21 Si 0.904 3.096 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.243 4.243 26 C -0.019 4.019 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.096 0.904 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 1.007 -12.254 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.011 4.011 4 H 0.106 0.894 5 C -0.191 4.191 6 C -0.190 4.190 7 C 0.027 3.973 8 H 0.143 0.857 9 N -0.348 5.348 10 C -0.068 4.068 11 C 0.372 3.628 12 O -0.451 6.451 13 C -0.294 4.294 14 C -0.120 4.120 15 C -0.214 4.214 16 C 0.124 3.876 17 C -0.473 4.473 18 H 0.104 0.896 19 C -0.140 4.140 20 N -0.375 5.375 21 Si 0.727 3.273 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.263 4.263 26 C -0.038 4.038 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.560 0.543 -12.358 13.562 hybrid contribution -0.622 0.798 0.656 1.206 sum -6.182 1.341 -11.702 13.302 Atomic orbital electron populations 1.22766 0.81501 1.02610 0.99718 1.87975 1.19412 1.27256 1.94480 1.24503 0.94952 0.85507 0.96114 0.89375 1.23303 0.97979 1.01106 0.96728 1.23227 0.99665 0.99572 0.96533 1.22786 0.94876 0.98289 0.81358 0.85742 1.47626 1.62041 1.17782 1.07385 1.22444 0.98893 0.83985 1.01469 1.18716 0.76672 0.82701 0.84740 1.90626 1.42003 1.26126 1.86351 1.18791 1.24014 0.96030 0.90545 1.22058 0.96916 0.94483 0.98510 1.20849 1.08978 1.00032 0.91494 1.17754 0.85431 0.91099 0.93282 1.19823 1.40808 0.91663 0.94984 0.89604 1.26117 0.93084 0.97531 0.97300 1.69832 1.25597 1.07242 1.34784 0.86364 0.81257 0.78948 0.80777 1.19169 1.19614 1.17873 1.20621 1.13385 0.97047 0.95229 1.20329 0.94279 0.97289 0.91948 0.94346 0.93964 0.89840 0.89049 0.90891 0.89411 0.90180 0.92324 0.89751 0.91325 0.84975 0.87135 0.90087 0.88587 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.37 -5.38 10.71 -35.23 -0.38 -5.75 16 3 C 0.05 0.62 3.76 -25.92 -0.10 0.53 16 4 H 0.09 1.03 6.65 -51.93 -0.35 0.69 16 5 C -0.15 -1.57 7.93 -25.83 -0.20 -1.77 16 6 C -0.15 -1.72 7.50 -25.82 -0.19 -1.91 16 7 C 0.13 2.01 4.07 -67.11 -0.27 1.73 16 8 H 0.12 2.21 7.18 -51.93 -0.37 1.84 16 9 N -0.62 -10.80 3.09 -191.96 -0.59 -11.39 16 10 C 0.07 1.05 7.43 59.85 0.44 1.50 16 11 C 0.57 12.80 7.55 -12.43 -0.09 12.71 16 12 O -0.57 -14.26 15.95 5.28 0.08 -14.18 16 13 C -0.29 -6.80 5.82 -104.73 -0.61 -7.41 16 14 C -0.10 -2.25 7.86 -39.61 -0.31 -2.56 16 15 C -0.19 -4.74 8.73 -39.27 -0.34 -5.08 16 16 C 0.13 3.28 5.60 -106.80 -0.60 2.68 16 17 C -0.45 -11.15 8.98 -37.75 -0.34 -11.49 16 18 H 0.09 2.06 8.00 -52.48 -0.42 1.64 16 19 C 0.08 1.94 4.87 -17.31 -0.08 1.86 16 20 N -0.75 -17.84 11.44 55.56 0.64 -17.20 16 21 Si 0.90 16.94 29.65 -169.99 -5.04 11.90 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 C -0.24 -6.03 9.73 -39.27 -0.38 -6.42 16 26 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.90 6.58 -51.93 -0.34 0.56 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.63 5.73 -51.93 -0.30 0.33 16 35 H 0.08 1.28 5.87 -51.93 -0.31 0.98 16 36 H 0.07 0.97 6.68 -51.93 -0.35 0.62 16 37 H 0.13 2.43 2.85 -73.93 -0.21 2.22 16 38 H 0.11 2.69 6.25 -52.49 -0.33 2.36 16 39 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.10 2.30 7.74 -52.49 -0.41 1.90 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -29.90 331.09 -8.14 -38.04 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.47 Total: 8.65 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.37 Total: -15.05 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.04 Total: -28.59 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.29 Total: -19.93 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.04 Total: 11.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.90 -8.14 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889340165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.297 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds