Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99780 * 2 1 4 4 H 1.08996 * 112.85332 * 20.33689 * 3 2 1 5 5 C 1.53779 * 113.61482 * 249.13662 * 3 2 1 6 6 C 1.53957 * 87.02068 * 220.04903 * 5 3 2 7 7 C 1.53782 * 113.61005 * 151.52910 * 3 2 1 8 8 H 1.08996 * 113.61773 * 25.43611 * 7 3 2 9 9 N 1.46498 * 113.61771 * 254.61049 * 7 3 2 10 10 C 1.46502 * 120.00066 * 305.99370 * 9 7 3 11 11 C 1.34774 * 120.00276 * 125.98281 * 9 7 3 12 12 O 1.21592 * 119.99430 * 9.16192 * 11 9 7 13 13 C 1.47632 * 120.00289 * 189.16306 * 11 9 7 14 14 C 1.40013 * 119.89849 * 341.66846 * 13 11 9 15 15 C 1.36317 * 120.11103 * 179.76103 * 14 13 11 16 16 C 1.40890 * 119.88713 * 0.51691 * 15 14 13 17 17 C 1.41110 * 120.09803 * 179.71884 * 16 15 14 18 18 H 1.08008 * 119.99645 * 160.62374 * 17 16 15 19 19 C 1.40227 * 120.00503 * 340.62063 * 17 16 15 20 20 N 1.30650 * 119.99456 * 329.68024 * 19 17 16 21 21 Si 1.86798 * 120.00318 * 149.67926 * 19 17 16 22 22 H 1.48498 * 109.46745 * 94.99232 * 21 19 17 23 23 H 1.48500 * 109.47158 * 214.99106 * 21 19 17 24 24 H 1.48494 * 109.46946 * 334.99404 * 21 19 17 25 25 C 1.40885 * 119.79459 * 359.74195 * 16 15 14 26 26 C 1.36311 * 119.89611 * 359.97438 * 25 16 15 27 27 H 1.08995 * 109.47022 * 60.00098 * 1 2 3 28 28 H 1.08997 * 109.46910 * 300.00006 * 1 2 3 29 29 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 30 30 H 1.08999 * 113.61702 * 334.56965 * 5 3 2 31 31 H 1.08999 * 113.61430 * 105.47127 * 5 3 2 32 32 H 1.08995 * 113.54059 * 270.81424 * 6 5 3 33 33 H 1.09005 * 113.74454 * 139.94261 * 6 5 3 34 34 H 1.09000 * 109.47090 * 7.98623 * 10 9 7 35 35 H 1.08992 * 109.47487 * 127.98695 * 10 9 7 36 36 H 1.09000 * 109.47018 * 247.99051 * 10 9 7 37 37 H 1.08001 * 119.94312 * 0.02693 * 14 13 11 38 38 H 1.08000 * 120.05747 * 180.23769 * 15 14 13 39 39 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.05178 * 180.02562 * 25 16 15 41 41 H 1.07994 * 119.95146 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3220 2.0753 0.3491 5 6 2.7192 1.6642 -1.3166 6 6 3.8120 2.3230 -0.4552 7 6 3.3923 1.3644 0.6717 8 1 3.9255 0.4139 0.6576 9 7 3.3743 1.9870 1.9977 10 6 2.7991 3.3231 2.1719 11 6 3.8868 1.3306 3.0574 12 8 4.5109 0.3005 2.8906 13 6 3.6903 1.8622 4.4206 14 6 3.3261 3.2020 4.6015 15 6 3.1388 3.6961 5.8580 16 6 3.3230 2.8591 6.9762 17 6 3.1361 3.3675 8.2792 18 1 2.9663 2.6908 9.1037 19 6 3.1709 4.7513 8.5037 20 7 3.9134 5.5169 7.7491 21 14 2.1556 5.4999 9.8814 22 1 2.9972 5.6393 11.0969 23 1 1.6640 6.8375 9.4635 24 1 0.9985 4.6180 10.1789 25 6 3.6948 1.5131 6.7895 26 6 3.8742 1.0264 5.5289 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0680 0.7958 -1.8754 31 1 2.1633 2.3703 -1.9335 32 1 3.6167 3.3718 -0.2317 33 1 4.8238 2.1496 -0.8218 34 1 2.3124 3.6325 1.2470 35 1 2.0662 3.3008 2.9783 36 1 3.5908 4.0300 2.4199 37 1 3.1891 3.8439 3.7438 38 1 2.8541 4.7287 5.9964 39 1 3.9378 6.4741 7.9046 40 1 3.8367 0.8677 7.6437 41 1 4.1596 -0.0051 5.3847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889340165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = -25.681575 kcal Electronic energy + Delta-G solvation = -22889.037268 eV Core-core repulsion = 19542.079149 eV Total energy + Delta-G solvation = -3346.958119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57167 -40.00536 -38.72795 -37.32455 -35.92485 -35.23793 -31.96386 -31.39183 -28.39442 -28.01491 -27.90911 -25.82461 -25.36085 -23.28148 -22.76112 -20.96740 -20.36391 -19.33909 -18.36149 -17.82863 -17.32606 -17.12828 -16.50613 -16.24901 -15.88273 -15.80921 -15.43006 -14.97412 -14.63478 -14.27885 -14.07639 -13.88584 -13.83457 -13.57361 -13.28975 -13.13433 -12.93585 -12.82938 -12.61354 -12.43441 -12.31962 -12.23173 -12.03086 -11.77801 -11.39326 -11.13021 -10.90981 -10.70495 -10.41558 -9.66130 -9.52679 -9.38058 -8.90497 -6.44633 0.49939 1.16696 1.35970 1.42231 1.55531 2.02482 2.13877 2.17074 2.68147 2.94087 3.49101 3.61636 3.68091 3.85018 3.87730 4.07731 4.15130 4.35430 4.40767 4.45993 4.51742 4.53340 4.63211 4.72371 4.77639 4.80799 4.87214 4.94622 5.00278 5.02014 5.03755 5.16800 5.26972 5.32259 5.58101 5.67881 5.84458 5.93782 6.03303 6.22023 6.28930 6.51452 6.54313 6.75782 6.91943 7.37894 8.06902 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.003630 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.955354 B = 7710.887692 C = 7838.253060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.049 3.951 4 H 0.105 0.895 5 C -0.135 4.135 6 C -0.137 4.137 7 C 0.105 3.895 8 H 0.088 0.912 9 N -0.606 5.606 10 C 0.064 3.936 11 C 0.567 3.433 12 O -0.611 6.611 13 C -0.304 4.304 14 C -0.091 4.091 15 C -0.213 4.213 16 C 0.100 3.900 17 C -0.477 4.477 18 H 0.083 0.917 19 C 0.050 3.950 20 N -0.778 5.778 21 Si 0.981 3.019 22 H -0.260 1.260 23 H -0.256 1.256 24 H -0.259 1.259 25 C -0.262 4.262 26 C -0.034 4.034 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.175 0.825 38 H 0.110 0.890 39 H 0.301 0.699 40 H 0.098 0.902 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 3.619 -13.873 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.010 4.010 4 H 0.123 0.877 5 C -0.173 4.173 6 C -0.176 4.176 7 C 0.002 3.998 8 H 0.106 0.894 9 N -0.336 5.336 10 C -0.077 4.077 11 C 0.363 3.637 12 O -0.496 6.496 13 C -0.308 4.308 14 C -0.108 4.108 15 C -0.232 4.232 16 C 0.097 3.903 17 C -0.503 4.503 18 H 0.101 0.899 19 C -0.173 4.173 20 N -0.400 5.400 21 Si 0.800 3.200 22 H -0.184 1.184 23 H -0.180 1.180 24 H -0.182 1.182 25 C -0.281 4.281 26 C -0.053 4.053 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.191 0.809 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.157 3.178 -14.025 16.064 hybrid contribution -0.108 -0.055 1.094 1.101 sum -7.265 3.123 -12.931 15.158 Atomic orbital electron populations 1.22942 0.79769 1.03585 1.00756 1.87940 1.21451 1.28439 1.94706 1.24610 0.93815 0.85463 0.97087 0.87708 1.23217 0.96937 1.01448 0.95669 1.23234 1.00401 0.99700 0.94241 1.23148 0.97441 0.98160 0.81097 0.89426 1.47623 1.60376 1.18501 1.07142 1.22586 0.99042 0.82193 1.03857 1.18644 0.76946 0.82557 0.85535 1.90593 1.44062 1.27915 1.87007 1.19096 1.23834 0.96669 0.91202 1.22530 0.94790 0.94264 0.99242 1.20932 1.10318 0.99938 0.92059 1.18111 0.86159 0.91599 0.94435 1.20091 1.42176 0.93202 0.94822 0.89854 1.26931 0.93482 0.97016 0.99872 1.69816 1.25902 1.08245 1.36016 0.85214 0.79105 0.78271 0.77396 1.18433 1.18029 1.18223 1.20735 1.14461 0.97391 0.95539 1.20461 0.94806 0.97479 0.92565 0.91832 0.94252 0.89130 0.89347 0.87622 0.87279 0.89952 0.87615 0.90571 0.90551 0.80914 0.87218 0.88708 0.88366 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 113.37 1.23 1.73 16 2 O -0.41 -11.25 10.71 -148.98 -1.60 -12.84 16 3 C 0.05 1.14 3.76 31.12 0.12 1.26 16 4 H 0.11 2.04 6.65 -2.39 -0.02 2.03 16 5 C -0.13 -2.27 7.93 31.18 0.25 -2.02 16 6 C -0.14 -2.68 7.50 31.18 0.23 -2.44 16 7 C 0.11 3.10 4.07 45.52 0.19 3.29 16 8 H 0.09 3.24 7.18 -2.39 -0.02 3.22 16 9 N -0.61 -20.64 3.09 -879.49 -2.72 -23.36 16 10 C 0.06 1.62 7.43 127.77 0.95 2.57 16 11 C 0.57 25.83 7.55 86.72 0.65 26.48 16 12 O -0.61 -32.00 15.95 -4.01 -0.06 -32.07 16 13 C -0.30 -14.61 5.82 -19.93 -0.12 -14.73 16 14 C -0.09 -4.01 7.86 22.25 0.17 -3.83 16 15 C -0.21 -10.52 8.73 22.47 0.20 -10.33 16 16 C 0.10 5.31 5.60 -21.28 -0.12 5.19 16 17 C -0.48 -24.37 8.98 23.46 0.21 -24.16 16 18 H 0.08 4.13 8.00 -2.91 -0.02 4.11 16 19 C 0.05 2.27 4.87 85.35 0.42 2.69 16 20 N -0.78 -36.49 11.44 21.87 0.25 -36.24 16 21 Si 0.98 33.95 29.65 68.60 2.03 35.98 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 23 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 25 C -0.26 -13.65 9.73 22.47 0.22 -13.43 16 26 C -0.03 -1.74 9.52 22.25 0.21 -1.52 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.69 6.58 -2.39 -0.02 1.67 16 33 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.11 1.73 5.73 -2.39 -0.01 1.72 16 35 H 0.08 2.12 5.87 -2.39 -0.01 2.11 16 36 H 0.08 1.88 6.68 -2.39 -0.02 1.87 16 37 H 0.17 6.04 2.85 -23.05 -0.07 5.97 16 38 H 0.11 5.35 6.25 -2.91 -0.02 5.33 16 39 H 0.30 12.31 8.29 -92.71 -0.77 11.54 16 40 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.09 4.68 7.74 -2.91 -0.02 4.66 16 Total: -1.00 -68.70 331.09 3.71 -64.99 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.99 Total: 32.80 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.81 Total: -29.25 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -2.47 Total: -59.60 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.66 Total: -44.91 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -68.70 3.71 -64.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889340165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.306 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds