Wall clock time and date at job start Tue Mar 31 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00188 * 2 1 4 4 H 1.09004 * 112.90867 * 341.25002 * 3 2 1 5 5 C 1.53780 * 113.61371 * 112.50327 * 3 2 1 6 6 C 1.53785 * 87.08208 * 139.98611 * 5 3 2 7 7 C 1.53780 * 113.61770 * 210.00300 * 3 2 1 8 8 H 1.08998 * 113.69235 * 105.46154 * 7 3 2 9 9 N 1.46507 * 113.61286 * 334.56553 * 7 3 2 10 10 C 1.46499 * 119.99658 * 316.23667 * 9 7 3 11 11 C 1.34767 * 119.99949 * 136.23632 * 9 7 3 12 12 O 1.21550 * 120.00191 * 4.78351 * 11 9 7 13 13 C 1.47883 * 120.00246 * 184.78555 * 11 9 7 14 14 C 1.39921 * 120.02594 * 218.10070 * 13 11 9 15 15 C 1.38331 * 120.35798 * 180.27337 * 14 13 11 16 16 C 1.37751 * 120.40910 * 359.48714 * 15 14 13 17 17 C 1.40748 * 120.04045 * 0.51002 * 16 15 14 18 18 C 1.41444 * 120.17713 * 179.72230 * 17 16 15 19 19 H 1.08002 * 120.00028 * 171.43846 * 18 17 16 20 20 C 1.39940 * 119.99884 * 351.43982 * 18 17 16 21 21 N 1.30827 * 119.99881 * 323.35841 * 20 18 17 22 22 Si 1.86800 * 119.99840 * 143.36370 * 20 18 17 23 23 H 1.48498 * 109.47171 * 94.99574 * 22 20 18 24 24 H 1.48503 * 109.47115 * 214.99425 * 22 20 18 25 25 H 1.48500 * 109.47128 * 334.99752 * 22 20 18 26 26 C 1.38995 * 120.02419 * 38.11900 * 13 11 9 27 27 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46657 * 299.99708 * 1 2 3 29 29 H 1.08997 * 109.46922 * 59.99928 * 1 2 3 30 30 H 1.08999 * 113.61752 * 25.43307 * 5 3 2 31 31 H 1.09002 * 113.69103 * 254.53623 * 5 3 2 32 32 H 1.08998 * 113.61138 * 220.02179 * 6 5 3 33 33 H 1.08991 * 113.61607 * 89.11536 * 6 5 3 34 34 H 1.09004 * 109.46681 * 204.64803 * 10 9 7 35 35 H 1.08994 * 109.47441 * 324.65352 * 10 9 7 36 36 H 1.09002 * 109.46926 * 84.65600 * 10 9 7 37 37 H 1.07994 * 119.82145 * 359.97438 * 14 13 11 38 38 H 1.07995 * 119.79367 * 179.74317 * 15 14 13 39 39 H 1.08003 * 119.98166 * 180.27894 * 16 15 14 40 40 H 0.96999 * 119.99997 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.20386 * 359.95793 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 -0.3227 5 6 2.7535 1.6487 1.3017 6 6 3.8227 2.3181 0.4222 7 6 3.3755 1.3719 -0.7046 8 1 3.3398 1.8467 -1.6850 9 7 4.0923 0.0942 -0.7170 10 6 4.1418 -0.7297 0.4934 11 6 4.7061 -0.3232 -1.8419 12 8 4.7396 0.3984 -2.8195 13 6 5.3388 -1.6591 -1.8869 14 6 6.5468 -1.8389 -2.5696 15 6 7.1418 -3.0867 -2.6209 16 6 6.5577 -4.1641 -1.9919 17 6 5.3425 -4.0024 -1.3004 18 6 4.7372 -5.1080 -0.6585 19 1 3.8828 -4.9576 -0.0152 20 6 5.2454 -6.3966 -0.8570 21 7 5.7100 -6.7431 -2.0299 22 14 5.2603 -7.6221 0.5528 23 1 4.0458 -8.4735 0.4814 24 1 6.4706 -8.4769 0.4529 25 1 5.2765 -6.8902 1.8448 26 6 4.7336 -2.7370 -1.2515 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1167 0.7739 1.8410 31 1 2.2151 2.3474 1.9422 32 1 4.8426 2.1398 0.7630 33 1 3.6223 3.3692 0.2150 34 1 5.0225 -1.3711 0.4604 35 1 4.1948 -0.0844 1.3702 36 1 3.2450 -1.3466 0.5499 37 1 7.0149 -1.0001 -3.0632 38 1 8.0721 -3.2161 -3.1539 39 1 7.0305 -5.1343 -2.0326 40 1 6.0626 -7.6362 -2.1674 41 1 3.8014 -2.6027 -0.7231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889357114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:01 Heat of formation + Delta-G solvation = -20.330758 kcal Electronic energy + Delta-G solvation = -23334.923324 eV Core-core repulsion = 19988.197234 eV Total energy + Delta-G solvation = -3346.726090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44856 -38.52292 -36.93124 -36.12616 -33.89653 -33.49779 -29.97780 -29.57691 -27.24150 -27.05373 -25.32116 -24.66688 -24.38942 -22.11736 -20.80034 -19.99217 -18.66223 -17.46910 -17.03789 -16.15805 -15.64678 -15.41631 -15.20811 -14.83321 -14.75298 -14.40428 -14.07814 -13.34173 -13.18813 -13.02725 -12.67531 -12.48396 -12.37026 -12.19516 -11.96584 -11.72759 -11.56868 -11.19513 -11.09224 -10.89106 -10.78116 -10.66073 -10.53698 -10.42978 -10.17741 -9.60420 -9.44737 -8.98465 -8.94691 -8.15826 -7.66679 -7.47710 -7.02220 -4.35582 2.36434 2.75144 3.01288 3.04118 3.20191 3.35734 3.72507 3.83890 3.92356 4.43805 4.44245 4.58281 4.85978 4.90348 5.20087 5.32937 5.35385 5.43777 5.49137 5.61106 5.62638 5.68073 5.84960 5.88302 5.96494 6.15244 6.19929 6.28743 6.44037 6.53189 6.87294 6.91069 6.94751 7.09185 7.19415 7.28147 7.41903 7.75300 7.89051 7.92771 8.06600 8.13514 8.51094 8.77537 8.84858 8.89396 9.92488 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004848 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.778014 B = 5773.866137 C = 6772.826701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.051 3.949 4 H 0.091 0.909 5 C -0.168 4.168 6 C -0.153 4.153 7 C 0.127 3.873 8 H 0.106 0.894 9 N -0.586 5.586 10 C 0.073 3.927 11 C 0.571 3.429 12 O -0.558 6.558 13 C -0.102 4.102 14 C -0.202 4.202 15 C -0.103 4.103 16 C -0.173 4.173 17 C 0.100 3.900 18 C -0.464 4.464 19 H 0.083 0.917 20 C 0.090 3.910 21 N -0.760 5.760 22 Si 0.896 3.104 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.201 4.201 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.284 0.716 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 10.101 7.814 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.008 4.008 4 H 0.109 0.891 5 C -0.205 4.205 6 C -0.192 4.192 7 C 0.021 3.979 8 H 0.124 0.876 9 N -0.317 5.317 10 C -0.069 4.069 11 C 0.363 3.637 12 O -0.437 6.437 13 C -0.104 4.104 14 C -0.222 4.222 15 C -0.122 4.122 16 C -0.192 4.192 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.133 4.133 21 N -0.382 5.382 22 Si 0.719 3.281 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.220 4.220 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.698 10.099 7.136 13.615 hybrid contribution -0.305 -0.415 0.560 0.761 sum -6.003 9.684 7.697 13.750 Atomic orbital electron populations 1.22786 0.81850 1.02796 0.99353 1.88097 1.18977 1.26369 1.94375 1.24294 0.93977 0.85945 0.96596 0.89091 1.23873 0.97819 1.01494 0.97299 1.23157 0.99993 0.98889 0.97175 1.22184 0.90261 0.85649 0.99805 0.87646 1.47154 1.52704 1.19536 1.12309 1.22361 1.03784 0.94983 0.85771 1.19022 0.76448 0.86831 0.81388 1.90646 1.60563 1.57125 1.35375 1.19208 0.97236 0.91167 1.02833 1.20263 0.97851 0.96858 1.07195 1.20583 0.98598 0.93047 0.99929 1.21487 0.96954 0.98134 1.02623 1.17462 0.91161 0.91671 0.89953 1.19518 1.13879 0.90374 1.25351 0.89906 1.25993 0.92409 0.99465 0.95470 1.69964 1.26344 1.20330 1.21603 0.86506 0.78763 0.79761 0.83063 1.19424 1.19847 1.17967 1.21168 1.01032 0.92988 1.06856 0.89666 0.94434 0.94314 0.87817 0.91495 0.90151 0.89196 0.89503 0.91901 0.91401 0.88850 0.88963 0.86281 0.90460 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.40 16 2 O -0.36 -5.12 8.53 -35.23 -0.30 -5.42 16 3 C 0.05 0.63 4.12 -25.92 -0.11 0.52 16 4 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 5 C -0.17 -1.76 7.27 -25.92 -0.19 -1.95 16 6 C -0.15 -1.72 7.48 -25.91 -0.19 -1.91 16 7 C 0.13 1.87 4.43 -67.11 -0.30 1.57 16 8 H 0.11 1.69 7.19 -51.93 -0.37 1.32 16 9 N -0.59 -10.49 2.86 -174.10 -0.50 -10.99 16 10 C 0.07 1.18 7.22 59.85 0.43 1.61 16 11 C 0.57 12.64 7.33 -12.32 -0.09 12.55 16 12 O -0.56 -13.61 16.36 5.32 0.09 -13.52 16 13 C -0.10 -2.41 5.08 -105.04 -0.53 -2.94 16 14 C -0.20 -4.82 9.63 -38.92 -0.37 -5.20 16 15 C -0.10 -2.45 10.01 -39.73 -0.40 -2.85 16 16 C -0.17 -4.40 8.91 -38.81 -0.35 -4.75 16 17 C 0.10 2.58 5.68 -106.87 -0.61 1.98 16 18 C -0.46 -11.76 8.96 -37.72 -0.34 -12.10 16 19 H 0.08 2.02 8.04 -52.49 -0.42 1.59 16 20 C 0.09 2.14 4.86 -17.34 -0.08 2.05 16 21 N -0.76 -18.73 11.23 55.55 0.62 -18.10 16 22 Si 0.90 17.54 29.68 -169.99 -5.04 12.49 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 26 C -0.20 -4.81 7.35 -38.44 -0.28 -5.09 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 1.16 5.05 -51.93 -0.26 0.90 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.55 5.75 -51.93 -0.30 1.26 16 35 H 0.06 0.83 4.79 -51.93 -0.25 0.58 16 36 H 0.07 1.13 5.99 -51.93 -0.31 0.82 16 37 H 0.09 2.15 8.03 -52.49 -0.42 1.73 16 38 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 3.08 5.80 -52.48 -0.30 2.78 16 40 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 41 H 0.11 2.40 5.80 -52.49 -0.30 2.09 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -29.55 328.67 -7.94 -37.49 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.45 Total: 8.20 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.31 Total: -15.10 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.13 Total: -29.09 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.21 Total: -18.94 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.04 Total: 12.49 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.55 -7.94 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889357114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.156 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds