Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00188 * 2 1 4 4 H 1.09004 * 112.90867 * 341.25002 * 3 2 1 5 5 C 1.53780 * 113.61371 * 112.50327 * 3 2 1 6 6 C 1.53785 * 87.08208 * 139.98611 * 5 3 2 7 7 C 1.53780 * 113.61770 * 210.00300 * 3 2 1 8 8 H 1.08998 * 113.69235 * 105.46154 * 7 3 2 9 9 N 1.46507 * 113.61286 * 334.56553 * 7 3 2 10 10 C 1.46499 * 119.99658 * 316.23667 * 9 7 3 11 11 C 1.34767 * 119.99949 * 136.23632 * 9 7 3 12 12 O 1.21550 * 120.00191 * 4.78351 * 11 9 7 13 13 C 1.47883 * 120.00246 * 184.78555 * 11 9 7 14 14 C 1.39921 * 120.02594 * 218.10070 * 13 11 9 15 15 C 1.38331 * 120.35798 * 180.27337 * 14 13 11 16 16 C 1.37751 * 120.40910 * 359.48714 * 15 14 13 17 17 C 1.40748 * 120.04045 * 0.51002 * 16 15 14 18 18 C 1.41444 * 120.17713 * 179.72230 * 17 16 15 19 19 H 1.08002 * 120.00028 * 171.43846 * 18 17 16 20 20 C 1.39940 * 119.99884 * 351.43982 * 18 17 16 21 21 N 1.30827 * 119.99881 * 323.35841 * 20 18 17 22 22 Si 1.86800 * 119.99840 * 143.36370 * 20 18 17 23 23 H 1.48498 * 109.47171 * 94.99574 * 22 20 18 24 24 H 1.48503 * 109.47115 * 214.99425 * 22 20 18 25 25 H 1.48500 * 109.47128 * 334.99752 * 22 20 18 26 26 C 1.38995 * 120.02419 * 38.11900 * 13 11 9 27 27 H 1.08999 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46657 * 299.99708 * 1 2 3 29 29 H 1.08997 * 109.46922 * 59.99928 * 1 2 3 30 30 H 1.08999 * 113.61752 * 25.43307 * 5 3 2 31 31 H 1.09002 * 113.69103 * 254.53623 * 5 3 2 32 32 H 1.08998 * 113.61138 * 220.02179 * 6 5 3 33 33 H 1.08991 * 113.61607 * 89.11536 * 6 5 3 34 34 H 1.09004 * 109.46681 * 204.64803 * 10 9 7 35 35 H 1.08994 * 109.47441 * 324.65352 * 10 9 7 36 36 H 1.09002 * 109.46926 * 84.65600 * 10 9 7 37 37 H 1.07994 * 119.82145 * 359.97438 * 14 13 11 38 38 H 1.07995 * 119.79367 * 179.74317 * 15 14 13 39 39 H 1.08003 * 119.98166 * 180.27894 * 16 15 14 40 40 H 0.96999 * 119.99997 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.20386 * 359.95793 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 -0.3227 5 6 2.7535 1.6487 1.3017 6 6 3.8227 2.3181 0.4222 7 6 3.3755 1.3719 -0.7046 8 1 3.3398 1.8467 -1.6850 9 7 4.0923 0.0942 -0.7170 10 6 4.1418 -0.7297 0.4934 11 6 4.7061 -0.3232 -1.8419 12 8 4.7396 0.3984 -2.8195 13 6 5.3388 -1.6591 -1.8869 14 6 6.5468 -1.8389 -2.5696 15 6 7.1418 -3.0867 -2.6209 16 6 6.5577 -4.1641 -1.9919 17 6 5.3425 -4.0024 -1.3004 18 6 4.7372 -5.1080 -0.6585 19 1 3.8828 -4.9576 -0.0152 20 6 5.2454 -6.3966 -0.8570 21 7 5.7100 -6.7431 -2.0299 22 14 5.2603 -7.6221 0.5528 23 1 4.0458 -8.4735 0.4814 24 1 6.4706 -8.4769 0.4529 25 1 5.2765 -6.8902 1.8448 26 6 4.7336 -2.7370 -1.2515 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1167 0.7739 1.8410 31 1 2.2151 2.3474 1.9422 32 1 4.8426 2.1398 0.7630 33 1 3.6223 3.3692 0.2150 34 1 5.0225 -1.3711 0.4604 35 1 4.1948 -0.0844 1.3702 36 1 3.2450 -1.3466 0.5499 37 1 7.0149 -1.0001 -3.0632 38 1 8.0721 -3.2161 -3.1539 39 1 7.0305 -5.1343 -2.0326 40 1 6.0626 -7.6362 -2.1674 41 1 3.8014 -2.6027 -0.7231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889357114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = -37.017024 kcal Electronic energy + Delta-G solvation = -23335.646895 eV Core-core repulsion = 19988.197234 eV Total energy + Delta-G solvation = -3347.449661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73774 -40.00350 -38.70517 -37.25063 -35.69656 -34.97304 -31.88342 -31.36731 -28.55456 -27.90472 -27.21001 -26.03470 -25.31279 -23.66223 -22.64011 -21.49260 -20.05304 -19.08902 -18.25916 -17.66545 -17.21444 -16.77542 -16.55602 -16.39759 -16.13488 -15.79370 -15.44795 -14.85557 -14.77616 -14.33177 -14.16121 -14.01068 -13.73020 -13.56756 -13.32842 -13.05929 -12.92712 -12.87125 -12.56267 -12.41945 -12.22227 -11.98906 -11.90793 -11.67112 -11.51571 -11.42650 -10.81564 -10.67461 -10.40040 -9.65886 -9.54754 -9.33954 -8.84454 -6.29264 0.50747 0.96906 1.39711 1.48413 1.59702 1.91622 2.03732 2.19150 2.60838 2.97463 3.45354 3.63892 3.66714 3.83077 3.89921 4.02305 4.24832 4.37695 4.41084 4.51571 4.58103 4.58922 4.64295 4.76793 4.85672 4.90749 4.95029 4.97612 5.03215 5.05904 5.17587 5.18989 5.31398 5.32889 5.48686 5.67414 5.88212 5.99465 6.05551 6.21758 6.36131 6.40240 6.59212 6.85834 6.95885 7.18589 8.14079 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.004848 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.778014 B = 5773.866137 C = 6772.826701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.055 3.945 4 H 0.118 0.882 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.097 3.903 8 H 0.086 0.914 9 N -0.574 5.574 10 C 0.077 3.923 11 C 0.563 3.437 12 O -0.591 6.591 13 C -0.107 4.107 14 C -0.219 4.219 15 C -0.100 4.100 16 C -0.199 4.199 17 C 0.076 3.924 18 C -0.492 4.492 19 H 0.084 0.916 20 C 0.052 3.948 21 N -0.789 5.789 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.255 1.255 26 C -0.201 4.201 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.296 0.704 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 10.676 10.027 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.004 4.004 4 H 0.135 0.865 5 C -0.191 4.191 6 C -0.177 4.177 7 C -0.008 4.008 8 H 0.104 0.896 9 N -0.304 5.304 10 C -0.064 4.064 11 C 0.354 3.646 12 O -0.473 6.473 13 C -0.110 4.110 14 C -0.239 4.239 15 C -0.118 4.118 16 C -0.218 4.218 17 C 0.073 3.927 18 C -0.518 4.518 19 H 0.102 0.898 20 C -0.169 4.169 21 N -0.412 5.412 22 Si 0.794 3.206 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.178 1.178 26 C -0.221 4.221 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.731 10.695 9.377 15.736 hybrid contribution -0.059 -0.563 -0.171 0.592 sum -6.791 10.131 9.206 15.281 Atomic orbital electron populations 1.22926 0.80220 1.03225 1.00761 1.88044 1.20923 1.27674 1.94590 1.24409 0.93021 0.86045 0.96933 0.86483 1.23757 0.97100 1.01570 0.96699 1.23161 0.99980 0.99576 0.95010 1.22658 0.92725 0.84850 1.00560 0.89617 1.47141 1.51277 1.20650 1.11314 1.22377 1.02471 0.95314 0.86265 1.18857 0.77169 0.86224 0.82323 1.90614 1.62284 1.57679 1.36738 1.19486 0.97180 0.92216 1.02069 1.20438 0.98411 0.97145 1.07897 1.20803 0.99233 0.92520 0.99280 1.21489 0.97593 0.98311 1.04411 1.17813 0.91741 0.92669 0.90438 1.19793 1.14707 0.91368 1.25957 0.89758 1.26878 0.91361 1.00905 0.97758 1.69962 1.26242 1.21525 1.23425 0.85328 0.79263 0.77034 0.79014 1.18415 1.18876 1.17814 1.21202 1.01184 0.92639 1.07038 0.89881 0.92085 0.93753 0.88659 0.88412 0.90745 0.86424 0.91616 0.88374 0.91850 0.88370 0.86648 0.87106 0.89293 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.85 113.37 1.23 1.71 16 2 O -0.39 -10.57 8.53 -148.98 -1.27 -11.84 16 3 C 0.05 1.20 4.12 31.12 0.13 1.33 16 4 H 0.12 1.94 7.87 -2.38 -0.02 1.92 16 5 C -0.15 -2.68 7.27 31.12 0.23 -2.46 16 6 C -0.14 -2.72 7.48 31.12 0.23 -2.49 16 7 C 0.10 2.75 4.43 45.52 0.20 2.95 16 8 H 0.09 2.76 7.19 -2.39 -0.02 2.74 16 9 N -0.57 -20.59 2.86 -823.00 -2.35 -22.94 16 10 C 0.08 2.46 7.22 127.77 0.92 3.39 16 11 C 0.56 25.59 7.33 86.80 0.64 26.22 16 12 O -0.59 -29.69 16.36 -3.87 -0.06 -29.76 16 13 C -0.11 -5.21 5.08 -20.13 -0.10 -5.31 16 14 C -0.22 -10.76 9.63 22.70 0.22 -10.55 16 15 C -0.10 -4.87 10.01 22.18 0.22 -4.65 16 16 C -0.20 -10.44 8.91 22.77 0.20 -10.24 16 17 C 0.08 4.04 5.68 -21.32 -0.12 3.92 16 18 C -0.49 -25.36 8.96 23.47 0.21 -25.15 16 19 H 0.08 4.17 8.04 -2.91 -0.02 4.15 16 20 C 0.05 2.48 4.86 85.25 0.41 2.90 16 21 N -0.79 -39.14 11.23 21.83 0.25 -38.89 16 22 Si 0.97 35.44 29.68 68.60 2.04 37.48 16 23 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 24 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 25 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 26 C -0.20 -9.94 7.35 23.01 0.17 -9.77 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 1.83 5.05 -2.39 -0.01 1.82 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 2.39 5.75 -2.39 -0.01 2.38 16 35 H 0.10 2.43 4.79 -2.39 -0.01 2.41 16 36 H 0.06 2.10 5.99 -2.39 -0.01 2.09 16 37 H 0.10 4.65 8.03 -2.91 -0.02 4.62 16 38 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 39 H 0.11 5.92 5.80 -2.91 -0.02 5.90 16 40 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 41 H 0.11 5.25 5.80 -2.91 -0.02 5.24 16 Total: -1.00 -65.80 328.67 4.43 -61.38 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 1.04 Total: 32.77 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.79 Total: -28.19 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -2.11 Total: -61.84 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.33 Total: -41.60 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.04 Total: 37.48 kcal Total: -65.80 4.43 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889357114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds