Wall clock time and date at job start Tue Mar 31 2020 06:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99795 * 2 1 4 4 H 1.09000 * 112.85107 * 18.80866 * 3 2 1 5 5 C 1.53774 * 113.61339 * 247.49981 * 3 2 1 6 6 C 1.53776 * 87.08268 * 220.01899 * 5 3 2 7 7 C 1.53774 * 113.61284 * 150.00332 * 3 2 1 8 8 H 1.09002 * 113.61456 * 254.61516 * 7 3 2 9 9 N 1.46497 * 113.61569 * 25.43037 * 7 3 2 10 10 C 1.46504 * 119.99827 * 59.99979 * 9 7 3 11 11 C 1.34774 * 120.00268 * 239.99780 * 9 7 3 12 12 O 1.21553 * 120.00039 * 355.02163 * 11 9 7 13 13 C 1.47888 * 120.00208 * 175.28629 * 11 9 7 14 14 C 1.39922 * 120.02399 * 335.01575 * 13 11 9 15 15 C 1.38332 * 120.35715 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.41092 * 359.97438 * 15 14 13 17 17 C 1.40748 * 120.04024 * 0.02562 * 16 15 14 18 18 C 1.41433 * 120.17623 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00172 * 28.91809 * 18 17 16 20 20 C 1.39934 * 120.00114 * 208.91082 * 18 17 16 21 21 N 1.30822 * 120.00065 * 10.46293 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 190.45694 * 20 18 17 23 23 H 1.48505 * 109.46975 * 60.00140 * 22 20 18 24 24 H 1.48493 * 109.47171 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47093 * 300.00530 * 22 20 18 26 26 C 1.38995 * 120.02791 * 154.73575 * 13 11 9 27 27 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46890 * 299.99794 * 1 2 3 29 29 H 1.08990 * 109.47534 * 59.99843 * 1 2 3 30 30 H 1.09004 * 113.61666 * 334.56846 * 5 3 2 31 31 H 1.09008 * 113.61940 * 105.47007 * 5 3 2 32 32 H 1.08998 * 113.62138 * 270.88500 * 6 5 3 33 33 H 1.09004 * 113.61555 * 139.98103 * 6 5 3 34 34 H 1.08998 * 109.46991 * 275.74940 * 10 9 7 35 35 H 1.08998 * 109.47268 * 35.75628 * 10 9 7 36 36 H 1.09006 * 109.46984 * 155.74854 * 10 9 7 37 37 H 1.08001 * 119.82105 * 359.97438 * 14 13 11 38 38 H 1.07996 * 119.79161 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.97733 * 180.02562 * 16 15 14 40 40 H 0.97005 * 120.00594 * 179.97438 * 21 20 18 41 41 H 1.08006 * 120.19754 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 2.7533 1.6489 -1.3017 6 6 3.8226 2.3182 -0.4223 7 6 3.3755 1.3719 0.7044 8 1 3.3382 1.8457 1.6854 9 7 4.0923 0.0943 0.7168 10 6 4.4511 -0.5565 -0.5457 11 6 4.4216 -0.4824 1.8896 12 8 4.2052 0.0993 2.9348 13 6 5.0515 -1.8203 1.9047 14 6 4.8474 -2.7023 0.8379 15 6 5.4337 -3.9552 0.8446 16 6 6.2254 -4.3489 1.9009 17 6 6.4422 -3.4753 2.9830 18 6 7.2550 -3.8764 4.0687 19 1 8.0564 -4.5830 3.9112 20 6 7.0209 -3.3575 5.3471 21 7 5.9354 -2.6668 5.5840 22 14 8.2583 -3.6511 6.7153 23 1 9.5705 -3.0733 6.3284 24 1 7.7800 -3.0029 7.9628 25 1 8.4079 -5.1110 6.9425 26 6 5.8515 -2.2004 2.9760 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.1165 0.7740 -1.8411 31 1 2.2139 2.3477 -1.9412 32 1 3.6222 3.3693 -0.2149 33 1 4.8425 2.1400 -0.7632 34 1 3.6048 -1.1409 -0.9066 35 1 4.7107 0.2017 -1.2844 36 1 5.3052 -1.2147 -0.3853 37 1 4.2287 -2.4033 0.0046 38 1 5.2704 -4.6285 0.0162 39 1 6.6801 -5.3285 1.8988 40 1 5.7729 -2.3074 6.4702 41 1 6.0151 -1.5212 3.7997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889357115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:05 Heat of formation + Delta-G solvation = -10.645755 kcal Electronic energy + Delta-G solvation = -23364.783099 eV Core-core repulsion = 20018.476983 eV Total energy + Delta-G solvation = -3346.306117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43194 -38.49981 -36.88068 -36.13622 -34.07096 -33.20402 -30.00697 -29.38485 -27.42649 -27.01077 -25.19292 -24.82679 -24.32436 -22.10662 -20.90016 -19.79147 -18.51327 -17.56704 -16.97068 -16.23392 -15.58837 -15.30717 -15.16747 -14.86443 -14.59392 -14.36022 -14.09976 -13.36995 -13.13800 -12.94347 -12.69433 -12.39593 -12.38104 -12.25138 -11.86558 -11.69522 -11.56203 -11.09989 -11.06253 -10.87560 -10.77210 -10.64047 -10.55842 -10.21994 -9.95578 -9.57260 -9.44919 -9.18819 -8.84898 -8.12584 -7.53745 -7.37008 -6.66007 -4.36391 2.31608 2.87573 3.11424 3.13584 3.19613 3.39065 3.82330 3.95484 3.98408 4.43679 4.57041 4.69585 4.85218 4.94541 5.20019 5.32733 5.36043 5.41375 5.53218 5.61588 5.62575 5.66410 5.78999 5.89460 5.93658 5.98976 6.15073 6.21470 6.22809 6.43389 6.74738 6.96448 7.06054 7.10170 7.28216 7.32993 7.45846 7.73645 7.84547 7.96646 8.09194 8.24578 8.57184 8.88452 8.90126 8.99839 10.27666 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.004273 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.017396 B = 6551.620330 C = 6920.573475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.048 3.952 4 H 0.090 0.910 5 C -0.162 4.162 6 C -0.152 4.152 7 C 0.128 3.872 8 H 0.106 0.894 9 N -0.589 5.589 10 C 0.070 3.930 11 C 0.570 3.430 12 O -0.545 6.545 13 C -0.126 4.126 14 C -0.223 4.223 15 C -0.105 4.105 16 C -0.206 4.206 17 C 0.098 3.902 18 C -0.465 4.465 19 H 0.078 0.922 20 C 0.071 3.929 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.089 4.089 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.283 0.717 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 7.768 -11.809 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.012 4.012 4 H 0.107 0.893 5 C -0.199 4.199 6 C -0.190 4.190 7 C 0.022 3.978 8 H 0.124 0.876 9 N -0.321 5.321 10 C -0.073 4.073 11 C 0.362 3.638 12 O -0.422 6.422 13 C -0.130 4.130 14 C -0.242 4.242 15 C -0.124 4.124 16 C -0.226 4.226 17 C 0.096 3.904 18 C -0.495 4.495 19 H 0.097 0.903 20 C -0.147 4.147 21 N -0.418 5.418 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.110 4.110 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.358 8.018 -11.031 15.046 hybrid contribution 0.034 0.069 0.566 0.571 sum -6.324 8.087 -10.465 14.660 Atomic orbital electron populations 1.22772 0.81900 1.02650 0.99370 1.88066 1.18887 1.26539 1.94371 1.24349 0.94378 0.85805 0.96665 0.89254 1.23711 0.97802 1.01194 0.97229 1.23124 0.99981 0.98931 0.96992 1.22166 0.90178 0.85636 0.99848 0.87591 1.47105 1.57410 1.20926 1.06704 1.22526 1.01660 0.97719 0.85368 1.18928 0.76781 0.85894 0.82157 1.90686 1.54954 1.64795 1.31808 1.19435 1.03055 0.92674 0.97792 1.21141 1.07632 0.95978 0.99460 1.20491 0.98847 0.95418 0.97624 1.21175 1.04954 0.98843 0.97620 1.17576 0.90914 0.90069 0.91830 1.19514 1.14456 1.23505 0.92011 0.90346 1.25929 0.95182 0.93294 1.00263 1.69767 1.22255 1.26157 1.23605 0.86310 0.81158 0.79464 0.79417 1.18890 1.20316 1.19067 1.21631 0.97185 0.96492 0.95642 0.89827 0.94253 0.94498 0.88457 0.91511 0.89041 0.89992 0.92221 0.92553 0.88388 0.86806 0.88924 0.88711 0.90562 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.36 -5.31 9.68 -35.23 -0.34 -5.65 16 3 C 0.05 0.60 4.14 -25.93 -0.11 0.49 16 4 H 0.09 0.94 7.87 -51.93 -0.41 0.54 16 5 C -0.16 -1.67 7.26 -25.92 -0.19 -1.86 16 6 C -0.15 -1.65 7.30 -25.92 -0.19 -1.84 16 7 C 0.13 1.92 4.42 -67.12 -0.30 1.62 16 8 H 0.11 1.76 7.21 -51.93 -0.37 1.39 16 9 N -0.59 -10.56 2.69 -174.10 -0.47 -11.03 16 10 C 0.07 1.03 6.73 59.85 0.40 1.44 16 11 C 0.57 13.16 7.49 -12.31 -0.09 13.06 16 12 O -0.54 -14.31 16.08 5.32 0.09 -14.22 16 13 C -0.13 -3.08 5.49 -105.04 -0.58 -3.66 16 14 C -0.22 -4.80 7.53 -38.92 -0.29 -5.09 16 15 C -0.11 -2.28 10.01 -39.72 -0.40 -2.68 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.65 5.54 -106.88 -0.59 2.06 16 18 C -0.47 -12.46 9.06 -37.73 -0.34 -12.80 16 19 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 20 C 0.07 1.84 5.25 -17.35 -0.09 1.75 16 21 N -0.79 -21.72 10.85 55.55 0.60 -21.12 16 22 Si 0.91 19.23 29.57 -169.99 -5.03 14.21 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.43 8.19 -38.44 -0.31 -2.75 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 1.05 5.58 -51.93 -0.29 0.76 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.90 7.28 -51.93 -0.38 0.52 16 34 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 35 H 0.06 0.67 5.20 -51.93 -0.27 0.40 16 36 H 0.10 1.59 5.09 -51.93 -0.26 1.32 16 37 H 0.11 2.13 4.43 -52.49 -0.23 1.89 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 40 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 41 H 0.13 3.87 6.02 -52.48 -0.32 3.56 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -31.44 327.57 -7.96 -39.40 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.39 Total: 7.66 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.36 Total: -14.18 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.13 Total: -32.15 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.26 Total: -19.87 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.44 -7.96 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889357115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds