Wall clock time and date at job start Tue Mar 31 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99795 * 2 1 4 4 H 1.09000 * 112.85107 * 18.80866 * 3 2 1 5 5 C 1.53774 * 113.61339 * 247.49981 * 3 2 1 6 6 C 1.53776 * 87.08268 * 220.01899 * 5 3 2 7 7 C 1.53774 * 113.61284 * 150.00332 * 3 2 1 8 8 H 1.09002 * 113.61456 * 254.61516 * 7 3 2 9 9 N 1.46497 * 113.61569 * 25.43037 * 7 3 2 10 10 C 1.46504 * 119.99827 * 59.99979 * 9 7 3 11 11 C 1.34774 * 120.00268 * 239.99780 * 9 7 3 12 12 O 1.21553 * 120.00039 * 355.02163 * 11 9 7 13 13 C 1.47888 * 120.00208 * 175.28629 * 11 9 7 14 14 C 1.39922 * 120.02399 * 335.01575 * 13 11 9 15 15 C 1.38332 * 120.35715 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.41092 * 359.97438 * 15 14 13 17 17 C 1.40748 * 120.04024 * 0.02562 * 16 15 14 18 18 C 1.41433 * 120.17623 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00172 * 28.91809 * 18 17 16 20 20 C 1.39934 * 120.00114 * 208.91082 * 18 17 16 21 21 N 1.30822 * 120.00065 * 10.46293 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 190.45694 * 20 18 17 23 23 H 1.48505 * 109.46975 * 60.00140 * 22 20 18 24 24 H 1.48493 * 109.47171 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47093 * 300.00530 * 22 20 18 26 26 C 1.38995 * 120.02791 * 154.73575 * 13 11 9 27 27 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46890 * 299.99794 * 1 2 3 29 29 H 1.08990 * 109.47534 * 59.99843 * 1 2 3 30 30 H 1.09004 * 113.61666 * 334.56846 * 5 3 2 31 31 H 1.09008 * 113.61940 * 105.47007 * 5 3 2 32 32 H 1.08998 * 113.62138 * 270.88500 * 6 5 3 33 33 H 1.09004 * 113.61555 * 139.98103 * 6 5 3 34 34 H 1.08998 * 109.46991 * 275.74940 * 10 9 7 35 35 H 1.08998 * 109.47268 * 35.75628 * 10 9 7 36 36 H 1.09006 * 109.46984 * 155.74854 * 10 9 7 37 37 H 1.08001 * 119.82105 * 359.97438 * 14 13 11 38 38 H 1.07996 * 119.79161 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.97733 * 180.02562 * 16 15 14 40 40 H 0.97005 * 120.00594 * 179.97438 * 21 20 18 41 41 H 1.08006 * 120.19754 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 2.7533 1.6489 -1.3017 6 6 3.8226 2.3182 -0.4223 7 6 3.3755 1.3719 0.7044 8 1 3.3382 1.8457 1.6854 9 7 4.0923 0.0943 0.7168 10 6 4.4511 -0.5565 -0.5457 11 6 4.4216 -0.4824 1.8896 12 8 4.2052 0.0993 2.9348 13 6 5.0515 -1.8203 1.9047 14 6 4.8474 -2.7023 0.8379 15 6 5.4337 -3.9552 0.8446 16 6 6.2254 -4.3489 1.9009 17 6 6.4422 -3.4753 2.9830 18 6 7.2550 -3.8764 4.0687 19 1 8.0564 -4.5830 3.9112 20 6 7.0209 -3.3575 5.3471 21 7 5.9354 -2.6668 5.5840 22 14 8.2583 -3.6511 6.7153 23 1 9.5705 -3.0733 6.3284 24 1 7.7800 -3.0029 7.9628 25 1 8.4079 -5.1110 6.9425 26 6 5.8515 -2.2004 2.9760 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.1165 0.7740 -1.8411 31 1 2.2139 2.3477 -1.9412 32 1 3.6222 3.3693 -0.2149 33 1 4.8425 2.1400 -0.7632 34 1 3.6048 -1.1409 -0.9066 35 1 4.7107 0.2017 -1.2844 36 1 5.3052 -1.2147 -0.3853 37 1 4.2287 -2.4033 0.0046 38 1 5.2704 -4.6285 0.0162 39 1 6.6801 -5.3285 1.8988 40 1 5.7729 -2.3074 6.4702 41 1 6.0151 -1.5212 3.7997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889357115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:04 Heat of formation + Delta-G solvation = -30.273708 kcal Electronic energy + Delta-G solvation = -23365.634231 eV Core-core repulsion = 20018.476983 eV Total energy + Delta-G solvation = -3347.157249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74207 -39.99788 -38.65844 -37.30975 -35.79912 -34.81754 -31.83071 -31.27434 -28.72860 -27.90546 -27.08474 -26.13787 -25.29560 -23.62741 -22.76925 -21.22503 -19.95787 -19.26545 -18.18493 -17.71560 -17.13510 -16.86164 -16.54029 -16.31128 -16.07294 -15.74020 -15.34282 -14.90641 -14.73641 -14.37006 -14.14584 -13.99800 -13.83212 -13.52737 -13.29319 -13.23325 -12.80786 -12.63471 -12.53344 -12.42920 -12.04168 -11.94325 -11.86250 -11.71041 -11.59602 -11.36566 -11.08756 -10.60266 -10.43498 -9.62949 -9.35476 -9.28214 -8.58072 -6.39107 0.43643 1.02306 1.36040 1.48487 1.49957 2.00129 2.05543 2.20825 2.79199 2.98306 3.45364 3.64524 3.68187 3.84150 3.93259 4.03924 4.22310 4.37666 4.48623 4.51124 4.55086 4.65407 4.68666 4.76649 4.82629 4.87093 4.90238 4.93808 5.00918 5.10218 5.12483 5.21882 5.26366 5.33412 5.53398 5.69306 5.86486 5.96898 6.06628 6.29561 6.36268 6.42033 6.63702 6.90424 6.96569 7.27760 8.37150 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.004273 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.017396 B = 6551.620330 C = 6920.573475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.048 3.952 4 H 0.109 0.891 5 C -0.145 4.145 6 C -0.135 4.135 7 C 0.095 3.905 8 H 0.075 0.925 9 N -0.576 5.576 10 C 0.065 3.935 11 C 0.559 3.441 12 O -0.595 6.595 13 C -0.138 4.138 14 C -0.201 4.201 15 C -0.101 4.101 16 C -0.210 4.210 17 C 0.066 3.934 18 C -0.501 4.501 19 H 0.084 0.916 20 C 0.025 3.975 21 N -0.839 5.839 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.253 1.253 26 C -0.126 4.126 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.110 0.890 40 H 0.283 0.717 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 7.921 -15.142 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.011 4.011 4 H 0.127 0.873 5 C -0.182 4.182 6 C -0.173 4.173 7 C -0.010 4.010 8 H 0.093 0.907 9 N -0.306 5.306 10 C -0.076 4.076 11 C 0.351 3.649 12 O -0.477 6.477 13 C -0.141 4.141 14 C -0.220 4.220 15 C -0.119 4.119 16 C -0.229 4.229 17 C 0.064 3.936 18 C -0.531 4.531 19 H 0.102 0.898 20 C -0.188 4.188 21 N -0.465 5.465 22 Si 0.807 3.193 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.177 1.177 26 C -0.147 4.147 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.009 8.176 -14.446 18.018 hybrid contribution 0.104 0.067 1.395 1.401 sum -6.904 8.243 -13.051 16.910 Atomic orbital electron populations 1.22917 0.80276 1.03261 1.00590 1.87997 1.20827 1.27815 1.94621 1.24470 0.93299 0.85787 0.97520 0.87320 1.23608 0.96783 1.01542 0.96247 1.23136 1.00434 0.99300 0.94465 1.22635 0.92917 0.85163 1.00308 0.90662 1.47070 1.55915 1.21577 1.06001 1.22676 1.01472 0.98921 0.84526 1.18901 0.77091 0.85760 0.83190 1.90647 1.57344 1.65807 1.33946 1.19735 1.02391 0.94169 0.97828 1.21604 1.06258 0.95152 0.98961 1.20977 0.97066 0.95888 0.97974 1.21482 1.05037 0.99051 0.97369 1.17925 0.91846 0.90545 0.93249 1.19833 1.15436 1.24869 0.92976 0.89773 1.26880 0.96756 0.92492 1.02705 1.69910 1.24525 1.27962 1.24123 0.85186 0.78322 0.79881 0.75899 1.18215 1.19921 1.17706 1.21415 1.00220 0.96730 0.96321 0.89655 0.94360 0.91886 0.88496 0.88463 0.86624 0.89792 0.90948 0.88766 0.89702 0.83156 0.84216 0.87208 0.90625 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.85 113.37 1.23 1.74 16 2 O -0.39 -10.73 9.68 -148.98 -1.44 -12.17 16 3 C 0.05 1.09 4.14 31.12 0.13 1.22 16 4 H 0.11 2.00 7.87 -2.39 -0.02 1.98 16 5 C -0.14 -2.33 7.26 31.12 0.23 -2.10 16 6 C -0.14 -2.51 7.30 31.12 0.23 -2.28 16 7 C 0.09 2.76 4.42 45.52 0.20 2.96 16 8 H 0.08 2.62 7.21 -2.39 -0.02 2.61 16 9 N -0.58 -20.32 2.69 -823.01 -2.22 -22.54 16 10 C 0.06 1.74 6.73 127.77 0.86 2.60 16 11 C 0.56 26.82 7.49 86.80 0.65 27.47 16 12 O -0.60 -33.58 16.08 -3.88 -0.06 -33.64 16 13 C -0.14 -6.93 5.49 -20.13 -0.11 -7.04 16 14 C -0.20 -8.34 7.53 22.70 0.17 -8.17 16 15 C -0.10 -4.13 10.01 22.18 0.22 -3.91 16 16 C -0.21 -10.04 9.78 22.77 0.22 -9.82 16 17 C 0.07 3.73 5.54 -21.32 -0.12 3.61 16 18 C -0.50 -28.10 9.06 23.47 0.21 -27.88 16 19 H 0.08 4.41 7.87 -2.91 -0.02 4.38 16 20 C 0.02 1.34 5.25 85.25 0.45 1.78 16 21 N -0.84 -49.22 10.85 21.82 0.24 -48.98 16 22 Si 0.99 40.96 29.57 68.60 2.03 42.99 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 26 C -0.13 -7.32 8.19 23.01 0.19 -7.13 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.60 5.58 -2.39 -0.01 1.59 16 31 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.55 7.28 -2.39 -0.02 1.54 16 34 H 0.07 1.82 6.65 -2.39 -0.02 1.81 16 35 H 0.09 1.87 5.20 -2.39 -0.01 1.85 16 36 H 0.08 2.53 5.09 -2.38 -0.01 2.52 16 37 H 0.15 5.11 4.43 -2.91 -0.01 5.10 16 38 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.28 15.45 8.30 -92.70 -0.77 14.68 16 41 H 0.09 6.08 6.02 -2.91 -0.02 6.07 16 Total: -1.00 -75.58 327.57 4.35 -71.23 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.05 Total: 30.06 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 4.76 Total: -26.95 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.98 Total: -71.51 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.51 Total: -45.81 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -75.58 4.35 -71.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889357115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.955 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds