Wall clock time and date at job start Tue Mar 31 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99994 * 2 1 4 4 C 1.50700 * 109.46943 * 270.00115 * 3 2 1 5 5 H 1.08002 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00025 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99710 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47263 * 89.99437 * 8 6 4 10 10 H 1.48497 * 109.46846 * 209.99985 * 8 6 4 11 11 H 1.48506 * 109.46659 * 329.99283 * 8 6 4 12 12 C 1.34770 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99992 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47433 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47281 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47361 * 180.02562 * 16 15 14 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 15 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08993 * 109.47258 * 270.00177 * 1 2 3 26 26 H 1.09005 * 109.46705 * 30.00078 * 1 2 3 27 27 H 1.08996 * 109.47034 * 149.99775 * 1 2 3 28 28 H 1.09001 * 109.47223 * 29.99596 * 3 2 1 29 29 H 1.08999 * 109.47269 * 150.00219 * 3 2 1 30 30 H 0.97002 * 120.00182 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46863 * 59.99868 * 14 12 2 32 32 H 1.08998 * 109.46966 * 300.00639 * 14 12 2 33 33 H 1.09001 * 109.47026 * 60.00186 * 15 14 12 34 34 H 1.08995 * 109.47248 * 300.00389 * 15 14 12 35 35 H 1.09001 * 109.46706 * 60.00274 * 16 15 14 36 36 H 1.08995 * 109.47529 * 300.00501 * 16 15 14 37 37 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 38 38 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1269 2.8775 -1.6728 7 7 3.5543 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3078 4.2607 -3.8999 10 1 4.6983 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 6 1.6147 -4.9602 0.0012 17 6 2.5939 -6.1057 0.0018 18 8 3.7860 -5.8841 0.0022 19 6 2.1033 -7.4931 0.0019 20 6 3.0090 -8.5588 0.0031 21 6 2.5415 -9.8561 0.0037 22 6 1.1800 -10.1048 0.0038 23 6 0.2774 -9.0555 0.0023 24 6 0.7291 -7.7528 0.0016 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 4.0311 4.4435 -0.8504 31 1 0.7591 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8902 33 1 3.0063 -3.5774 0.8905 34 1 3.0063 -3.5774 -0.8894 35 1 0.9877 -5.0182 -0.8886 36 1 0.9882 -5.0177 0.8913 37 1 4.0717 -8.3663 -0.0011 38 1 3.2396 -10.6801 0.0050 39 1 0.8200 -11.1230 0.0047 40 1 -0.7835 -9.2577 0.0019 41 1 0.0236 -6.9351 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900357589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:02 Heat of formation + Delta-G solvation = -58.910342 kcal Electronic energy + Delta-G solvation = -21556.542312 eV Core-core repulsion = 18208.143286 eV Total energy + Delta-G solvation = -3348.399026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29030 -38.96825 -38.36605 -34.87700 -34.11236 -32.56233 -31.85241 -31.31894 -29.01581 -27.42177 -25.72159 -24.49735 -23.17428 -22.61720 -21.35607 -19.80262 -18.35865 -17.51797 -16.53038 -16.29659 -16.01014 -15.92050 -15.61720 -15.14375 -14.76581 -14.64636 -14.27392 -13.95520 -13.86913 -13.63964 -12.90386 -12.63839 -12.41358 -12.19430 -12.06690 -11.89764 -11.81148 -11.64121 -11.50502 -11.23070 -11.07638 -10.85791 -10.60493 -10.52373 -10.12277 -9.83135 -9.58946 -9.38635 -9.32785 -8.81008 -8.40509 -7.58604 -6.01038 -4.05653 0.37004 0.98757 2.21590 3.32029 3.38731 3.42702 3.46926 3.52603 3.70729 4.09677 4.42574 4.47795 4.54613 4.65658 4.82481 4.94800 5.01287 5.03310 5.13770 5.26686 5.33529 5.45057 5.48555 5.54918 5.60422 5.63980 5.69689 5.89013 5.94174 5.95648 6.04238 6.09826 6.22869 6.29593 6.49527 6.54943 7.10483 7.40083 7.49127 7.59577 7.95686 8.27449 8.48373 8.94450 9.17274 9.59356 11.07047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.002537 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.947959 B =11035.605657 C =11342.501681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.501 3.499 13 O -0.540 6.540 14 C -0.139 4.139 15 C -0.096 4.096 16 C -0.165 4.165 17 C 0.391 3.609 18 O -0.442 6.442 19 C -0.166 4.166 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.074 4.074 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 -25.655 2.673 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.287 3.713 13 O -0.418 6.418 14 C -0.179 4.179 15 C -0.134 4.134 16 C -0.202 4.202 17 C 0.268 3.732 18 O -0.316 6.316 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.152 4.152 24 C -0.092 4.092 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.034 -25.324 2.720 27.375 hybrid contribution -0.106 0.354 -0.995 1.062 sum -10.140 -24.969 1.725 27.005 Atomic orbital electron populations 1.21616 0.81580 1.02487 1.00275 1.48183 1.06105 1.07953 1.71622 1.19275 0.92579 0.78216 0.97448 1.21439 1.36404 1.06193 0.92332 0.92528 1.24952 0.95384 0.96452 0.97447 1.69935 1.38463 1.14327 1.30714 0.86490 0.77653 0.78567 0.84679 1.20667 1.21077 1.19898 1.20365 0.88191 0.85191 0.77529 1.90683 1.13994 1.87253 1.49830 1.21692 0.99209 0.93647 1.03350 1.21142 0.97183 0.90071 1.04958 1.22082 0.99228 0.94492 1.04445 1.22573 0.89877 0.89204 0.71550 1.90567 1.18779 1.87143 1.35081 1.20674 0.94460 0.95281 1.06295 1.21500 1.00364 0.91913 0.94469 1.21182 0.95862 0.96749 1.01376 1.21435 0.93390 0.99439 0.96869 1.21172 1.00087 0.92561 1.01417 1.21512 0.94413 0.97444 0.95821 0.93874 0.90912 0.92456 0.95104 0.93876 0.92744 0.89529 0.89695 0.90625 0.90508 0.88277 0.88311 0.84866 0.85450 0.85662 0.85370 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.61 -13.12 2.86 -182.95 -0.52 -13.64 16 3 C 0.24 6.57 5.16 -5.19 -0.03 6.54 16 4 C -0.52 -15.24 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 8 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.50 10.62 7.67 -10.99 -0.08 10.54 16 13 O -0.54 -14.18 15.56 5.56 0.09 -14.09 16 14 C -0.14 -1.97 4.25 -27.89 -0.12 -2.09 16 15 C -0.10 -1.37 3.79 -26.73 -0.10 -1.47 16 16 C -0.17 -1.61 4.31 -27.88 -0.12 -1.73 16 17 C 0.39 4.62 7.12 -30.69 -0.22 4.40 16 18 O -0.44 -6.99 15.98 5.58 0.09 -6.90 16 19 C -0.17 -1.62 5.87 -105.07 -0.62 -2.24 16 20 C -0.06 -0.61 9.60 -39.10 -0.38 -0.99 16 21 C -0.13 -0.98 10.03 -39.65 -0.40 -1.38 16 22 C -0.09 -0.59 10.04 -39.46 -0.40 -0.98 16 23 C -0.13 -0.84 10.03 -39.65 -0.40 -1.24 16 24 C -0.07 -0.54 9.47 -39.11 -0.37 -0.91 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 27 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 32 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 34 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 35 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.13 1.30 7.65 -52.49 -0.40 0.90 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.66 7.05 -52.49 -0.37 0.29 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -36.78 351.92 -8.41 -45.18 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.05 Total: -3.18 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.03 Total: -3.52 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.21 Total: -40.06 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.18 Total: -20.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.78 -8.41 -45.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.727 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds