Wall clock time and date at job start Tue Mar 31 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99994 * 2 1 4 4 C 1.50700 * 109.46943 * 270.00115 * 3 2 1 5 5 H 1.08002 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00025 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99710 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47263 * 89.99437 * 8 6 4 10 10 H 1.48497 * 109.46846 * 209.99985 * 8 6 4 11 11 H 1.48506 * 109.46659 * 329.99283 * 8 6 4 12 12 C 1.34770 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99992 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47433 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47281 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47361 * 180.02562 * 16 15 14 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 15 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08993 * 109.47258 * 270.00177 * 1 2 3 26 26 H 1.09005 * 109.46705 * 30.00078 * 1 2 3 27 27 H 1.08996 * 109.47034 * 149.99775 * 1 2 3 28 28 H 1.09001 * 109.47223 * 29.99596 * 3 2 1 29 29 H 1.08999 * 109.47269 * 150.00219 * 3 2 1 30 30 H 0.97002 * 120.00182 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46863 * 59.99868 * 14 12 2 32 32 H 1.08998 * 109.46966 * 300.00639 * 14 12 2 33 33 H 1.09001 * 109.47026 * 60.00186 * 15 14 12 34 34 H 1.08995 * 109.47248 * 300.00389 * 15 14 12 35 35 H 1.09001 * 109.46706 * 60.00274 * 16 15 14 36 36 H 1.08995 * 109.47529 * 300.00501 * 16 15 14 37 37 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 38 38 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1269 2.8775 -1.6728 7 7 3.5543 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3078 4.2607 -3.8999 10 1 4.6983 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 6 1.6147 -4.9602 0.0012 17 6 2.5939 -6.1057 0.0018 18 8 3.7860 -5.8841 0.0022 19 6 2.1033 -7.4931 0.0019 20 6 3.0090 -8.5588 0.0031 21 6 2.5415 -9.8561 0.0037 22 6 1.1800 -10.1048 0.0038 23 6 0.2774 -9.0555 0.0023 24 6 0.7291 -7.7528 0.0016 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 4.0311 4.4435 -0.8504 31 1 0.7591 -2.5302 -0.8897 32 1 0.7584 -2.5298 0.8902 33 1 3.0063 -3.5774 0.8905 34 1 3.0063 -3.5774 -0.8894 35 1 0.9877 -5.0182 -0.8886 36 1 0.9882 -5.0177 0.8913 37 1 4.0717 -8.3663 -0.0011 38 1 3.2396 -10.6801 0.0050 39 1 0.8200 -11.1230 0.0047 40 1 -0.7835 -9.2577 0.0019 41 1 0.0236 -6.9351 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900357589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:02 Heat of formation + Delta-G solvation = -82.821364 kcal Electronic energy + Delta-G solvation = -21557.579172 eV Core-core repulsion = 18208.143286 eV Total energy + Delta-G solvation = -3349.435886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11775 -40.54667 -39.12253 -36.63298 -35.33624 -34.67033 -32.56325 -31.85872 -30.47518 -28.94978 -27.23044 -25.71424 -24.46004 -23.45239 -22.46190 -20.60993 -19.89928 -18.71197 -18.22721 -17.75249 -17.11907 -17.03929 -16.62634 -16.43059 -16.15953 -15.92752 -15.22885 -14.94122 -14.90707 -14.38570 -14.27279 -14.11797 -13.73159 -13.46188 -13.45779 -13.23861 -12.88953 -12.84601 -12.70440 -12.57308 -12.51782 -12.31636 -12.20349 -11.93532 -11.74509 -11.67145 -10.77579 -10.65758 -10.49295 -9.92017 -9.90852 -9.39202 -8.23763 -6.39077 -0.28084 0.46035 1.34236 1.38255 1.48239 1.48408 1.89714 2.32575 2.47767 2.89778 3.02651 3.05245 3.71064 3.89601 4.05198 4.08025 4.09482 4.16827 4.25223 4.44252 4.50429 4.52200 4.63786 4.70035 4.72716 4.79197 4.83458 4.97387 5.00718 5.06091 5.11280 5.17868 5.23545 5.38385 5.42386 5.52011 5.53979 5.56141 5.85982 5.99770 6.05418 6.57980 6.69233 6.83520 7.27540 7.54100 8.83248 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030730 B = 0.002537 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.947959 B =11035.605657 C =11342.501681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.256 3.744 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.003 3.997 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.484 3.516 13 O -0.609 6.609 14 C -0.119 4.119 15 C -0.093 4.093 16 C -0.153 4.153 17 C 0.389 3.611 18 O -0.504 6.504 19 C -0.191 4.191 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.089 4.089 23 C -0.134 4.134 24 C -0.067 4.067 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.024 0.976 29 H -0.009 1.009 30 H 0.267 0.733 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -27.727 1.702 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.195 4.195 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.274 3.726 13 O -0.491 6.491 14 C -0.158 4.158 15 C -0.131 4.131 16 C -0.190 4.190 17 C 0.270 3.730 18 O -0.383 6.383 19 C -0.192 4.192 20 C -0.109 4.109 21 C -0.160 4.160 22 C -0.107 4.107 23 C -0.152 4.152 24 C -0.085 4.085 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.042 0.958 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.178 0.822 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.549 -27.416 1.756 31.087 hybrid contribution 1.241 0.921 -0.632 1.670 sum -13.308 -26.496 1.124 29.671 Atomic orbital electron populations 1.21979 0.77450 1.04275 1.02734 1.48252 1.08672 1.06285 1.71321 1.18733 0.91008 0.80827 0.95965 1.21715 1.36820 1.06487 0.93054 0.92857 1.25929 0.94898 0.96508 1.02215 1.70059 1.38980 1.14805 1.33124 0.85375 0.78165 0.78185 0.78838 1.18395 1.20700 1.19871 1.21758 0.87931 0.87218 0.75683 1.90652 1.17388 1.88354 1.52680 1.21708 0.98653 0.88344 1.07113 1.21027 0.97232 0.93286 1.01576 1.22103 0.98563 0.90352 1.07960 1.23198 0.89372 0.91028 0.69401 1.90557 1.21238 1.88012 1.38463 1.20627 0.95966 0.93853 1.08759 1.21549 0.99716 0.93413 0.96202 1.21402 0.97215 0.96089 1.01264 1.21855 0.92691 1.01180 0.94950 1.21615 1.01713 0.91934 0.99943 1.21853 0.93266 0.99109 0.94287 0.90991 0.91919 0.87909 0.95824 0.99043 0.92403 0.85734 0.85197 0.93994 0.94434 0.84592 0.84318 0.87044 0.84045 0.82848 0.82169 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.24 127.77 1.31 3.49 16 2 N -0.61 -26.52 2.86 -851.13 -2.43 -28.95 16 3 C 0.26 14.41 5.16 85.63 0.44 14.85 16 4 C -0.54 -32.34 9.39 25.60 0.24 -32.10 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.00 0.19 5.46 84.66 0.46 0.65 16 7 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 8 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 12 C 0.48 20.72 7.67 87.66 0.67 21.40 16 13 O -0.61 -34.04 15.56 -3.03 -0.05 -34.09 16 14 C -0.12 -3.02 4.25 29.85 0.13 -2.89 16 15 C -0.09 -2.65 3.79 30.59 0.12 -2.53 16 16 C -0.15 -2.54 4.31 29.85 0.13 -2.41 16 17 C 0.39 9.22 7.12 28.03 0.20 9.42 16 18 O -0.50 -17.44 15.98 -2.94 -0.05 -17.48 16 19 C -0.19 -3.56 5.87 -20.15 -0.12 -3.67 16 20 C -0.09 -1.78 9.60 22.58 0.22 -1.56 16 21 C -0.14 -1.92 10.03 22.23 0.22 -1.70 16 22 C -0.09 -0.82 10.04 22.35 0.22 -0.60 16 23 C -0.13 -1.09 10.03 22.23 0.22 -0.86 16 24 C -0.07 -0.72 9.47 22.58 0.21 -0.51 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 1.91 8.07 -2.38 -0.02 1.89 16 27 H 0.10 1.97 6.44 -2.39 -0.02 1.95 16 28 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 29 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 31 H 0.12 2.31 7.40 -2.39 -0.02 2.29 16 32 H 0.13 2.22 8.11 -2.39 -0.02 2.20 16 33 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 34 H 0.04 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.14 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.14 1.26 8.09 -2.39 -0.02 1.24 16 37 H 0.11 2.53 7.65 -2.91 -0.02 2.51 16 38 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.15 0.53 8.06 -2.91 -0.02 0.50 16 40 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 41 H 0.16 0.65 7.05 -2.91 -0.02 0.63 16 Total: -1.00 -90.75 351.92 5.47 -85.27 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.01 Total: 3.80 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.68 Total: 0.97 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.15 Total: -86.69 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.09 Total: -51.57 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -90.75 5.47 -85.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900357589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.451 kcal (2) G-P(sol) polarization free energy of solvation -90.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds