Wall clock time and date at job start Tue Mar 31 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00419 * 2 1 4 4 C 1.38759 * 120.17230 * 359.97438 * 3 2 1 5 5 C 1.37829 * 119.71378 * 180.14511 * 4 3 2 6 6 C 1.38950 * 120.62717 * 359.97305 * 5 4 3 7 7 C 1.37708 * 119.76888 * 359.76793 * 6 5 4 8 8 C 1.38427 * 120.17712 * 180.02562 * 3 2 1 9 9 C 1.50636 * 122.55988 * 180.73496 * 7 6 5 10 10 C 1.52723 * 110.59730 * 341.99853 * 9 7 6 11 11 C 1.53317 * 108.39182 * 51.14432 * 10 9 7 12 12 H 1.08998 * 109.68447 * 49.88758 * 11 10 9 13 13 C 1.50701 * 109.68195 * 170.43824 * 11 10 9 14 14 O 1.21294 * 120.00047 * 15.17734 * 13 11 10 15 15 N 1.34773 * 119.99989 * 195.18207 * 13 11 10 16 16 C 1.46504 * 120.00338 * 2.99521 * 15 13 11 17 17 C 1.37098 * 120.00124 * 182.99777 * 15 13 11 18 18 H 1.08004 * 119.99938 * 329.86218 * 17 15 13 19 19 C 1.38954 * 120.00616 * 149.86183 * 17 15 13 20 20 N 1.31409 * 120.00627 * 161.35334 * 19 17 15 21 21 Si 1.86803 * 119.99438 * 341.35585 * 19 17 15 22 22 H 1.48503 * 109.47158 * 88.59449 * 21 19 17 23 23 H 1.48501 * 109.46900 * 208.59410 * 21 19 17 24 24 H 1.48497 * 109.47243 * 328.58998 * 21 19 17 25 25 C 1.50653 * 117.70368 * 179.44204 * 6 5 4 26 26 H 1.08990 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47148 * 300.00647 * 1 2 3 28 28 H 1.09003 * 109.46473 * 59.99692 * 1 2 3 29 29 H 1.07999 * 120.14351 * 0.12357 * 4 3 2 30 30 H 1.08004 * 119.68724 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.74444 * 359.96978 * 8 3 2 32 32 H 1.09001 * 109.25375 * 102.29063 * 9 7 6 33 33 H 1.09003 * 109.25171 * 221.74606 * 9 7 6 34 34 H 1.09003 * 109.67994 * 170.86082 * 10 9 7 35 35 H 1.08996 * 109.68552 * 291.37684 * 10 9 7 36 36 H 1.08999 * 109.46396 * 34.37417 * 16 15 13 37 37 H 1.08993 * 109.47095 * 154.37739 * 16 15 13 38 38 H 1.09001 * 109.46757 * 274.37925 * 16 15 13 39 39 H 0.96993 * 120.00477 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.25398 * 282.57895 * 25 6 5 41 41 H 1.09003 * 109.25310 * 42.01093 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9295 3.5999 -0.0036 6 6 3.3169 3.6766 -0.0055 7 6 4.0656 2.5208 0.0004 8 6 3.4282 1.2875 -0.0005 9 6 5.5719 2.5307 0.0150 10 6 6.1045 3.8943 -0.4201 11 6 5.4051 4.9750 0.4127 12 1 5.4616 4.7174 1.4703 13 6 6.0704 6.3067 0.1778 14 8 6.8171 6.4533 -0.7668 15 7 5.8357 7.3346 1.0173 16 6 4.9862 7.1395 2.1948 17 6 6.3920 8.5628 0.7693 18 1 7.3406 8.6327 0.2577 19 6 5.7354 9.7179 1.1761 20 7 6.3976 10.8481 1.2805 21 14 3.9112 9.6641 1.5745 22 1 3.7273 9.3171 3.0067 23 1 3.3063 10.9934 1.3056 24 1 3.2496 8.6390 0.7279 25 6 3.9426 5.0470 -0.0218 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 0.2151 2.3264 0.0011 30 1 1.3437 4.5072 -0.0044 31 1 4.0151 0.3809 -0.0005 32 1 5.9230 2.3129 1.0237 33 1 5.9429 1.7661 -0.6675 34 1 7.1803 3.9393 -0.2506 35 1 5.8927 4.0507 -1.4778 36 1 5.1285 6.1306 2.5822 37 1 5.2567 7.8649 2.9621 38 1 3.9416 7.2778 1.9160 39 1 5.9394 11.6543 1.5648 40 1 3.8872 5.4554 -1.0308 41 1 3.3969 5.6994 0.6599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900452504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:55 Heat of formation + Delta-G solvation = -46.416741 kcal Electronic energy + Delta-G solvation = -23101.211016 eV Core-core repulsion = 19753.353753 eV Total energy + Delta-G solvation = -3347.857263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56332 -39.29232 -37.98721 -35.19522 -34.57056 -32.63255 -31.91473 -29.76567 -29.30660 -27.21712 -26.46674 -25.16100 -23.68416 -22.40597 -22.25342 -19.86140 -18.45058 -17.74710 -17.06043 -16.47702 -16.23558 -15.91502 -15.49984 -15.26737 -14.80748 -14.33807 -14.04990 -13.74453 -13.62782 -13.36396 -13.14065 -12.87556 -12.64975 -12.40287 -12.21601 -12.07867 -11.97318 -11.85796 -11.62418 -11.08791 -10.81551 -10.75826 -10.67264 -10.60957 -10.28323 -10.20267 -9.87498 -9.13745 -8.79464 -8.44153 -8.05690 -7.79191 -6.36645 -3.91735 1.27596 1.39567 3.04545 3.10146 3.20263 3.22940 3.65325 3.71537 4.14829 4.40092 4.64216 4.73360 4.83731 4.88882 4.90293 5.03978 5.09893 5.15483 5.20084 5.23809 5.29263 5.52660 5.56054 5.61518 5.69446 5.76976 5.85211 5.96827 5.99320 6.06847 6.09167 6.18082 6.26747 6.30337 6.37067 6.45193 6.62364 6.69281 6.80354 7.28468 7.54221 8.26976 8.52311 8.97337 9.35203 9.78283 10.76132 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.004211 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.228220 B = 6647.752627 C = 7508.822706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.082 4.082 10 C -0.095 4.095 11 C -0.103 4.103 12 H 0.085 0.915 13 C 0.468 3.532 14 O -0.565 6.565 15 N -0.468 5.468 16 C 0.054 3.946 17 C -0.315 4.315 18 H 0.110 0.890 19 C 0.054 3.946 20 N -0.870 5.870 21 Si 0.884 3.116 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.268 1.268 25 C -0.067 4.067 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.273 0.727 40 H 0.081 0.919 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 -19.173 1.082 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.227 4.227 5 C -0.098 4.098 6 C -0.100 4.100 7 C -0.033 4.033 8 C -0.173 4.173 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.124 4.124 12 H 0.104 0.896 13 C 0.256 3.744 14 O -0.447 6.447 15 N -0.190 5.190 16 C -0.090 4.090 17 C -0.442 4.442 18 H 0.127 0.873 19 C -0.150 4.150 20 N -0.508 5.508 21 Si 0.712 3.288 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.193 1.193 25 C -0.105 4.105 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.810 -19.052 0.664 22.426 hybrid contribution -1.542 0.362 0.398 1.633 sum -13.352 -18.690 1.062 22.994 Atomic orbital electron populations 1.23010 0.78677 1.03647 1.01309 1.86044 1.21144 1.27161 1.89103 1.18873 0.92321 0.83964 0.97599 1.21099 0.99730 0.92354 1.09558 1.20971 0.93962 0.97151 0.97758 1.19599 0.93028 0.94838 1.02571 1.19482 0.95838 0.91229 0.96770 1.20370 0.91226 0.98089 1.07576 1.20572 0.90206 0.98840 1.02270 1.21320 1.00202 0.91506 1.00308 1.21257 0.95187 0.94952 1.01052 0.89644 1.20027 0.85446 0.85615 0.83338 1.90550 1.39258 1.83696 1.31225 1.43719 1.44898 1.10344 1.20012 1.22116 0.94618 1.01923 0.90303 1.19189 1.05656 0.80081 1.39250 0.87250 1.25301 0.98222 0.94971 0.96527 1.69720 1.36150 1.00527 1.44365 0.86998 0.86002 0.77196 0.78609 1.20198 1.21757 1.19288 1.20365 0.94219 0.93005 1.02890 0.88464 0.92760 0.92773 0.85736 0.85815 0.85455 0.90308 0.90406 0.90642 0.90936 0.91945 0.90413 0.93932 0.91623 0.90082 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.57 10.50 -19.45 -0.20 -3.78 16 3 C 0.12 1.43 6.68 -39.32 -0.26 1.16 16 4 C -0.21 -2.39 9.04 -39.54 -0.36 -2.75 16 5 C -0.08 -1.00 9.60 -39.47 -0.38 -1.38 16 6 C -0.10 -1.39 5.74 -104.57 -0.60 -1.99 16 7 C -0.03 -0.43 5.74 -104.63 -0.60 -1.03 16 8 C -0.15 -1.90 9.55 -39.29 -0.38 -2.28 16 9 C -0.08 -1.00 5.67 -28.06 -0.16 -1.15 16 10 C -0.10 -1.46 4.62 -26.71 -0.12 -1.59 16 11 C -0.10 -1.76 1.80 -91.74 -0.17 -1.92 16 12 H 0.09 1.32 6.47 -51.93 -0.34 0.98 16 13 C 0.47 10.75 6.82 -10.99 -0.07 10.67 16 14 O -0.57 -15.20 15.87 5.55 0.09 -15.11 16 15 N -0.47 -11.32 2.74 -122.19 -0.33 -11.66 16 16 C 0.05 1.06 7.19 59.85 0.43 1.49 16 17 C -0.31 -8.97 9.55 -14.93 -0.14 -9.12 16 18 H 0.11 3.53 7.73 -52.48 -0.41 3.12 16 19 C 0.05 1.51 5.24 -17.47 -0.09 1.42 16 20 N -0.87 -25.40 13.96 55.50 0.77 -24.62 16 21 Si 0.88 20.44 24.08 -169.99 -4.09 16.35 16 22 H -0.28 -5.88 6.77 56.52 0.38 -5.50 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.03 6.65 56.52 0.38 -5.65 16 25 C -0.07 -1.06 4.85 -28.04 -0.14 -1.20 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 29 H 0.12 1.12 6.33 -52.49 -0.33 0.79 16 30 H 0.12 1.37 8.05 -52.48 -0.42 0.95 16 31 H 0.13 1.38 8.05 -52.49 -0.42 0.96 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.06 1.00 6.26 -51.93 -0.33 0.67 16 37 H 0.08 1.57 6.37 -51.93 -0.33 1.24 16 38 H 0.04 0.80 4.55 -51.93 -0.24 0.56 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.08 1.19 6.58 -51.93 -0.34 0.85 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -32.93 322.29 -6.61 -39.54 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.66 Total: 2.89 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.05 Total: -8.47 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.44 Total: -36.28 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.12 Total: -18.89 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.09 Total: 16.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.93 -6.61 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.873 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds