Wall clock time and date at job start Tue Mar 31 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00419 * 2 1 4 4 C 1.38759 * 120.17230 * 359.97438 * 3 2 1 5 5 C 1.37829 * 119.71378 * 180.14511 * 4 3 2 6 6 C 1.38950 * 120.62717 * 359.97305 * 5 4 3 7 7 C 1.37708 * 119.76888 * 359.76793 * 6 5 4 8 8 C 1.38427 * 120.17712 * 180.02562 * 3 2 1 9 9 C 1.50636 * 122.55988 * 180.73496 * 7 6 5 10 10 C 1.52723 * 110.59730 * 341.99853 * 9 7 6 11 11 C 1.53317 * 108.39182 * 51.14432 * 10 9 7 12 12 H 1.08998 * 109.68447 * 49.88758 * 11 10 9 13 13 C 1.50701 * 109.68195 * 170.43824 * 11 10 9 14 14 O 1.21294 * 120.00047 * 15.17734 * 13 11 10 15 15 N 1.34773 * 119.99989 * 195.18207 * 13 11 10 16 16 C 1.46504 * 120.00338 * 2.99521 * 15 13 11 17 17 C 1.37098 * 120.00124 * 182.99777 * 15 13 11 18 18 H 1.08004 * 119.99938 * 329.86218 * 17 15 13 19 19 C 1.38954 * 120.00616 * 149.86183 * 17 15 13 20 20 N 1.31409 * 120.00627 * 161.35334 * 19 17 15 21 21 Si 1.86803 * 119.99438 * 341.35585 * 19 17 15 22 22 H 1.48503 * 109.47158 * 88.59449 * 21 19 17 23 23 H 1.48501 * 109.46900 * 208.59410 * 21 19 17 24 24 H 1.48497 * 109.47243 * 328.58998 * 21 19 17 25 25 C 1.50653 * 117.70368 * 179.44204 * 6 5 4 26 26 H 1.08990 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47148 * 300.00647 * 1 2 3 28 28 H 1.09003 * 109.46473 * 59.99692 * 1 2 3 29 29 H 1.07999 * 120.14351 * 0.12357 * 4 3 2 30 30 H 1.08004 * 119.68724 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.74444 * 359.96978 * 8 3 2 32 32 H 1.09001 * 109.25375 * 102.29063 * 9 7 6 33 33 H 1.09003 * 109.25171 * 221.74606 * 9 7 6 34 34 H 1.09003 * 109.67994 * 170.86082 * 10 9 7 35 35 H 1.08996 * 109.68552 * 291.37684 * 10 9 7 36 36 H 1.08999 * 109.46396 * 34.37417 * 16 15 13 37 37 H 1.08993 * 109.47095 * 154.37739 * 16 15 13 38 38 H 1.09001 * 109.46757 * 274.37925 * 16 15 13 39 39 H 0.96993 * 120.00477 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.25398 * 282.57895 * 25 6 5 41 41 H 1.09003 * 109.25310 * 42.01093 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9295 3.5999 -0.0036 6 6 3.3169 3.6766 -0.0055 7 6 4.0656 2.5208 0.0004 8 6 3.4282 1.2875 -0.0005 9 6 5.5719 2.5307 0.0150 10 6 6.1045 3.8943 -0.4201 11 6 5.4051 4.9750 0.4127 12 1 5.4616 4.7174 1.4703 13 6 6.0704 6.3067 0.1778 14 8 6.8171 6.4533 -0.7668 15 7 5.8357 7.3346 1.0173 16 6 4.9862 7.1395 2.1948 17 6 6.3920 8.5628 0.7693 18 1 7.3406 8.6327 0.2577 19 6 5.7354 9.7179 1.1761 20 7 6.3976 10.8481 1.2805 21 14 3.9112 9.6641 1.5745 22 1 3.7273 9.3171 3.0067 23 1 3.3063 10.9934 1.3056 24 1 3.2496 8.6390 0.7279 25 6 3.9426 5.0470 -0.0218 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 0.2151 2.3264 0.0011 30 1 1.3437 4.5072 -0.0044 31 1 4.0151 0.3809 -0.0005 32 1 5.9230 2.3129 1.0237 33 1 5.9429 1.7661 -0.6675 34 1 7.1803 3.9393 -0.2506 35 1 5.8927 4.0507 -1.4778 36 1 5.1285 6.1306 2.5822 37 1 5.2567 7.8649 2.9621 38 1 3.9416 7.2778 1.9160 39 1 5.9394 11.6543 1.5648 40 1 3.8872 5.4554 -1.0308 41 1 3.3969 5.6994 0.6599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900452504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:55 Heat of formation + Delta-G solvation = -67.959518 kcal Electronic energy + Delta-G solvation = -23102.145181 eV Core-core repulsion = 19753.353753 eV Total energy + Delta-G solvation = -3348.791428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61512 -40.67388 -39.14403 -36.86947 -35.98919 -34.18653 -33.46796 -30.83069 -30.27925 -28.31152 -27.91801 -26.87592 -24.85995 -23.65192 -23.19136 -21.12001 -19.96781 -19.07862 -18.61728 -18.00147 -17.43193 -17.05411 -16.63542 -16.59615 -15.90692 -15.74899 -15.44206 -14.97784 -14.79470 -14.56654 -14.47778 -14.18739 -14.13403 -13.94082 -13.61543 -13.38668 -13.11499 -12.84611 -12.74786 -12.46264 -12.37634 -12.08842 -11.98037 -11.79690 -11.70208 -11.58428 -11.33294 -11.12936 -10.30482 -9.78812 -9.68325 -8.97377 -8.50205 -6.11866 0.38835 0.46521 1.22482 1.32822 1.44551 1.89652 2.18723 2.40236 2.69870 2.76262 2.98326 3.62965 3.68744 3.89322 3.93454 4.08318 4.11116 4.19063 4.24176 4.37123 4.38735 4.42877 4.45745 4.53655 4.58839 4.63049 4.71418 4.75964 4.77825 4.89162 4.98786 5.05228 5.11486 5.20308 5.34520 5.39526 5.45544 5.52327 5.73103 5.86575 6.01446 6.49641 6.53152 6.91955 7.30501 7.86115 8.67627 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.004211 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.228220 B = 6647.752627 C = 7508.822706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.118 4.118 7 C -0.039 4.039 8 C -0.162 4.162 9 C -0.072 4.072 10 C -0.093 4.093 11 C -0.091 4.091 12 H 0.112 0.888 13 C 0.461 3.539 14 O -0.618 6.618 15 N -0.481 5.481 16 C 0.047 3.953 17 C -0.337 4.337 18 H 0.045 0.955 19 C 0.005 3.995 20 N -0.919 5.919 21 Si 0.957 3.043 22 H -0.235 1.235 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.060 4.060 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.280 0.720 40 H 0.059 0.941 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 -21.833 2.753 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.118 4.118 7 C -0.039 4.039 8 C -0.181 4.181 9 C -0.109 4.109 10 C -0.131 4.131 11 C -0.112 4.112 12 H 0.130 0.870 13 C 0.252 3.748 14 O -0.503 6.503 15 N -0.202 5.202 16 C -0.095 4.095 17 C -0.465 4.465 18 H 0.063 0.937 19 C -0.196 4.196 20 N -0.557 5.557 21 Si 0.779 3.221 22 H -0.159 1.159 23 H -0.220 1.220 24 H -0.180 1.180 25 C -0.097 4.097 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.457 -21.742 2.365 26.781 hybrid contribution -0.346 1.135 -0.197 1.203 sum -15.802 -20.607 2.169 26.059 Atomic orbital electron populations 1.23318 0.76609 1.05462 1.02169 1.86035 1.23318 1.26713 1.88824 1.19059 0.92545 0.84666 0.96840 1.21347 1.01032 0.91631 1.08569 1.21135 0.93465 0.98229 0.97314 1.19459 0.93814 0.93743 1.04814 1.19541 0.96030 0.91392 0.96932 1.20511 0.91789 0.98178 1.07604 1.20524 0.89904 0.96767 1.03714 1.21279 0.99583 0.93183 0.99079 1.21236 0.95754 0.91268 1.02950 0.86977 1.21163 0.84208 0.87304 0.82161 1.90515 1.41427 1.84950 1.33423 1.43832 1.45478 1.08970 1.21887 1.22363 0.94437 1.04389 0.88321 1.18792 1.04485 0.83043 1.40182 0.93666 1.26180 1.03741 0.93792 0.95849 1.69854 1.38642 1.01609 1.45624 0.85861 0.78048 0.77378 0.80804 1.15879 1.22019 1.17989 1.20245 0.93045 0.94702 1.01740 0.86375 0.91749 0.91962 0.83299 0.84540 0.84214 0.88439 0.88567 0.91761 0.92818 0.87773 0.90936 0.92077 0.91058 0.92273 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.82 113.37 1.11 1.31 16 2 O -0.33 -6.38 10.50 -92.50 -0.97 -7.35 16 3 C 0.11 2.41 6.68 22.44 0.15 2.56 16 4 C -0.21 -4.01 9.04 22.30 0.20 -3.81 16 5 C -0.08 -1.82 9.60 22.34 0.21 -1.61 16 6 C -0.12 -2.99 5.74 -19.83 -0.11 -3.10 16 7 C -0.04 -0.91 5.74 -19.87 -0.11 -1.03 16 8 C -0.16 -3.53 9.55 22.46 0.21 -3.32 16 9 C -0.07 -1.58 5.67 29.74 0.17 -1.42 16 10 C -0.09 -2.82 4.62 30.61 0.14 -2.68 16 11 C -0.09 -3.00 1.80 -11.52 -0.02 -3.02 16 12 H 0.11 3.11 6.47 -2.39 -0.02 3.10 16 13 C 0.46 21.69 6.82 87.66 0.60 22.29 16 14 O -0.62 -35.25 15.87 -3.07 -0.05 -35.30 16 15 N -0.48 -23.46 2.74 -658.89 -1.80 -25.26 16 16 C 0.05 1.71 7.19 127.77 0.92 2.63 16 17 C -0.34 -20.21 9.55 84.04 0.80 -19.41 16 18 H 0.05 3.20 7.73 -2.91 -0.02 3.18 16 19 C 0.01 0.31 5.24 84.93 0.45 0.75 16 20 N -0.92 -55.62 13.96 21.66 0.30 -55.31 16 21 Si 0.96 41.26 24.08 68.60 1.65 42.91 16 22 H -0.24 -8.66 6.77 99.48 0.67 -7.98 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.26 -10.45 6.65 99.48 0.66 -9.79 16 25 C -0.06 -1.78 4.85 29.74 0.14 -1.64 16 26 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.56 7.67 -2.39 -0.02 0.54 16 28 H 0.06 0.56 7.67 -2.39 -0.02 0.55 16 29 H 0.15 2.06 6.33 -2.91 -0.02 2.04 16 30 H 0.14 2.55 8.05 -2.91 -0.02 2.53 16 31 H 0.14 2.60 8.05 -2.91 -0.02 2.58 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 35 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.10 2.90 6.26 -2.39 -0.01 2.89 16 37 H 0.07 2.73 6.37 -2.39 -0.02 2.72 16 38 H 0.06 2.03 4.55 -2.39 -0.01 2.02 16 39 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 41 H 0.08 2.33 6.58 -2.39 -0.02 2.31 16 Total: -1.00 -77.34 322.29 4.95 -72.38 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.96 Total: 19.41 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.86 Total: -11.48 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -1.50 Total: -80.58 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.02 Total: -42.65 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.65 Total: 42.91 kcal Total: -77.34 4.95 -72.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.424 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds