Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46508 * 119.99532 * 2 1 4 4 C 1.50702 * 109.47066 * 269.99839 * 3 2 1 5 5 H 1.08010 * 119.99705 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00087 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00301 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00113 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47026 * 90.00247 * 8 6 4 10 10 H 1.48497 * 109.47420 * 210.00359 * 8 6 4 11 11 H 1.48498 * 109.47246 * 330.00216 * 8 6 4 12 12 C 1.34772 * 120.00360 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99816 * 185.10181 * 12 2 1 14 14 C 1.50697 * 119.99944 * 5.10573 * 12 2 1 15 15 C 1.50696 * 109.87220 * 296.38551 * 14 12 2 16 16 C 1.38241 * 120.00094 * 101.20155 * 15 14 12 17 17 C 1.38231 * 120.00023 * 179.74569 * 16 15 14 18 18 C 1.38241 * 120.00130 * 0.53221 * 17 16 15 19 19 C 1.38243 * 119.99621 * 359.74430 * 18 17 16 20 20 C 1.38231 * 120.00232 * 281.48086 * 15 14 12 21 21 C 1.54103 * 109.87768 * 57.39245 * 14 12 2 22 22 C 1.54807 * 104.30376 * 117.47930 * 21 14 12 23 23 C 1.55223 * 101.98908 * 339.25952 * 22 21 14 24 24 O 1.43740 * 110.00396 * 175.29693 * 14 12 2 25 25 H 1.08996 * 109.47222 * 272.67433 * 1 2 3 26 26 H 1.08997 * 109.47146 * 32.67417 * 1 2 3 27 27 H 1.09005 * 109.46422 * 152.67412 * 1 2 3 28 28 H 1.08993 * 109.47405 * 29.99578 * 3 2 1 29 29 H 1.08997 * 109.47046 * 149.99865 * 3 2 1 30 30 H 0.96991 * 119.99751 * 179.97438 * 7 6 4 31 31 H 1.07997 * 120.00134 * 0.02562 * 16 15 14 32 32 H 1.08001 * 120.00346 * 180.29411 * 17 16 15 33 33 H 1.07992 * 120.00493 * 179.76903 * 18 17 16 34 34 H 1.08000 * 119.99498 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99662 * 359.97438 * 20 15 14 36 36 H 1.09008 * 110.48557 * 236.21924 * 21 14 12 37 37 H 1.08994 * 110.48984 * 358.73612 * 21 14 12 38 38 H 1.09006 * 110.90849 * 97.38736 * 22 21 14 39 39 H 1.09006 * 110.90884 * 220.98246 * 22 21 14 40 40 H 1.09001 * 110.52172 * 278.38463 * 23 22 21 41 41 H 1.09002 * 110.77472 * 155.50213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1267 2.8775 -1.6728 7 7 3.3455 3.2575 -2.9128 8 14 3.7336 3.9289 -0.2530 9 1 5.1068 3.5072 0.1236 10 1 3.7494 5.3555 -0.6649 11 1 2.8271 3.7598 0.9110 12 6 2.1390 -1.1671 0.0005 13 8 3.3482 -1.1690 0.0939 14 6 1.3900 -2.4697 -0.1150 15 6 0.4932 -2.6529 1.0821 16 6 -0.8601 -2.3905 0.9786 17 6 -1.6835 -2.5636 2.0752 18 6 -1.1520 -2.9886 3.2785 19 6 0.2023 -3.2455 3.3836 20 6 1.0247 -3.0778 2.2853 21 6 0.5487 -2.4776 -1.4061 22 6 1.1350 -3.6445 -2.2375 23 6 2.5432 -3.8141 -1.6068 24 8 2.3177 -3.5642 -0.2029 25 1 -0.3633 0.0479 1.0265 26 1 -0.3633 0.8650 -0.5548 27 1 -0.3632 -0.9131 -0.4718 28 1 1.6084 2.0285 0.5137 29 1 3.1499 1.1386 0.5138 30 1 3.8223 4.0834 -3.0900 31 1 -1.2747 -2.0546 0.0396 32 1 -2.7416 -2.3631 1.9931 33 1 -1.7947 -3.1202 4.1364 34 1 0.6174 -3.5779 4.3236 35 1 2.0827 -3.2789 2.3673 36 1 -0.5007 -2.6624 -1.1765 37 1 0.6610 -1.5343 -1.9405 38 1 0.5407 -4.5494 -2.1108 39 1 1.2083 -3.3733 -3.2908 40 1 3.2376 -3.0827 -2.0203 41 1 2.9166 -4.8264 -1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930595702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -21.593422 kcal Electronic energy + Delta-G solvation = -24175.813153 eV Core-core repulsion = 20829.032309 eV Total energy + Delta-G solvation = -3346.780843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03886 -38.55652 -37.76145 -35.12490 -33.10987 -32.15271 -31.81749 -30.83271 -28.73741 -27.75067 -26.19299 -23.92883 -23.00790 -22.52359 -21.41760 -20.76268 -18.65378 -17.78124 -16.94208 -16.39978 -16.09208 -15.48219 -15.32568 -14.89184 -14.72807 -14.53787 -14.10691 -13.70393 -13.49958 -13.20016 -12.94763 -12.65329 -12.53736 -12.34519 -12.08407 -11.81681 -11.63926 -11.33082 -11.26423 -11.10934 -10.93338 -10.78217 -10.67998 -10.51759 -10.14775 -10.07222 -9.55498 -9.10855 -8.88312 -8.60688 -8.44041 -7.69828 -6.11145 -4.10064 1.27190 1.40445 3.22076 3.28698 3.34621 3.37306 3.59520 3.70616 4.15036 4.38540 4.46111 4.57909 4.80573 4.89445 4.97579 5.04415 5.06328 5.21536 5.27765 5.39587 5.42441 5.57693 5.60428 5.71432 5.77319 5.82747 5.87025 5.92190 5.94873 6.02694 6.11686 6.16378 6.41151 6.49522 6.52269 6.67912 6.90544 6.94321 6.99784 7.32941 7.58794 8.21187 8.44243 8.88501 8.94467 9.49477 11.02037 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005809 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.903124 B = 4818.641773 C = 5528.159883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.589 5.589 3 C 0.214 3.786 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.504 3.496 13 O -0.525 6.525 14 C 0.132 3.868 15 C -0.074 4.074 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.087 4.087 21 C -0.156 4.156 22 C -0.152 4.152 23 C 0.043 3.957 24 O -0.340 6.340 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 -14.015 7.422 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.289 3.711 13 O -0.401 6.401 14 C 0.089 3.911 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.141 4.141 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.106 4.106 21 C -0.194 4.194 22 C -0.189 4.189 23 C -0.033 4.033 24 O -0.257 6.257 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.910 -13.959 7.542 19.256 hybrid contribution 0.305 0.873 0.392 1.004 sum -10.606 -13.086 7.934 18.619 Atomic orbital electron populations 1.22435 0.81283 1.03440 1.01063 1.47735 1.06183 1.06746 1.71506 1.19691 0.92579 0.79924 0.98401 1.21306 1.37089 1.07250 0.91146 0.90788 1.24837 0.95165 0.97311 0.95588 1.69892 1.41446 1.23582 1.18624 0.86858 0.80213 0.79741 0.82972 1.19854 1.21008 1.19035 1.20457 0.88075 0.84770 0.77787 1.90665 1.13761 1.86605 1.49050 1.20736 0.88475 0.87601 0.94302 1.19452 0.93219 1.00726 0.94085 1.21337 0.92559 0.99819 0.99465 1.21065 0.99618 1.00468 0.92991 1.21161 0.95299 0.99498 0.97682 1.21142 0.93819 1.00679 0.98450 1.21049 1.00509 0.97136 0.91862 1.23367 1.00378 1.01051 0.94577 1.23164 0.96896 0.98445 1.00429 1.23681 0.96494 1.01935 0.81193 1.88906 1.63527 1.48735 1.24549 0.93288 0.90739 0.90603 0.95133 0.94481 0.92534 0.84655 0.85798 0.86185 0.86024 0.85521 0.88806 0.88783 0.90426 0.89697 0.91254 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.10 59.85 0.48 1.47 16 2 N -0.59 -12.60 2.76 -182.95 -0.50 -13.11 16 3 C 0.21 5.39 4.28 -5.19 -0.02 5.37 16 4 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 5 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.50 10.99 6.29 -10.99 -0.07 10.92 16 13 O -0.52 -13.75 16.09 -13.91 -0.22 -13.97 16 14 C 0.13 2.24 0.69 -92.35 -0.06 2.18 16 15 C -0.07 -1.10 4.29 -104.63 -0.45 -1.55 16 16 C -0.11 -1.36 6.30 -39.58 -0.25 -1.61 16 17 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 18 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 19 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 20 C -0.09 -1.28 9.36 -39.59 -0.37 -1.65 16 21 C -0.16 -2.17 4.32 -25.20 -0.11 -2.28 16 22 C -0.15 -1.85 7.17 -24.60 -0.18 -2.03 16 23 C 0.04 0.64 7.67 38.33 0.29 0.93 16 24 O -0.34 -5.99 9.87 -54.70 -0.54 -6.53 16 25 H 0.05 0.72 7.39 -51.93 -0.38 0.34 16 26 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 27 H 0.08 1.02 1.94 -51.93 -0.10 0.92 16 28 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 29 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.14 1.36 4.37 -52.49 -0.23 1.13 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.99 7.87 -52.49 -0.41 1.57 16 36 H 0.09 1.03 5.04 -51.92 -0.26 0.77 16 37 H 0.09 1.48 6.80 -51.93 -0.35 1.12 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -35.17 323.43 -8.09 -43.25 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.43 Total: 2.05 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.36 Total: -6.92 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.27 Total: -39.89 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.76 Total: -20.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.17 -8.09 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.659 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds