Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46508 * 119.99532 * 2 1 4 4 C 1.50702 * 109.47066 * 269.99839 * 3 2 1 5 5 H 1.08010 * 119.99705 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00087 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00301 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00113 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47026 * 90.00247 * 8 6 4 10 10 H 1.48497 * 109.47420 * 210.00359 * 8 6 4 11 11 H 1.48498 * 109.47246 * 330.00216 * 8 6 4 12 12 C 1.34772 * 120.00360 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99816 * 185.10181 * 12 2 1 14 14 C 1.50697 * 119.99944 * 5.10573 * 12 2 1 15 15 C 1.50696 * 109.87220 * 296.38551 * 14 12 2 16 16 C 1.38241 * 120.00094 * 101.20155 * 15 14 12 17 17 C 1.38231 * 120.00023 * 179.74569 * 16 15 14 18 18 C 1.38241 * 120.00130 * 0.53221 * 17 16 15 19 19 C 1.38243 * 119.99621 * 359.74430 * 18 17 16 20 20 C 1.38231 * 120.00232 * 281.48086 * 15 14 12 21 21 C 1.54103 * 109.87768 * 57.39245 * 14 12 2 22 22 C 1.54807 * 104.30376 * 117.47930 * 21 14 12 23 23 C 1.55223 * 101.98908 * 339.25952 * 22 21 14 24 24 O 1.43740 * 110.00396 * 175.29693 * 14 12 2 25 25 H 1.08996 * 109.47222 * 272.67433 * 1 2 3 26 26 H 1.08997 * 109.47146 * 32.67417 * 1 2 3 27 27 H 1.09005 * 109.46422 * 152.67412 * 1 2 3 28 28 H 1.08993 * 109.47405 * 29.99578 * 3 2 1 29 29 H 1.08997 * 109.47046 * 149.99865 * 3 2 1 30 30 H 0.96991 * 119.99751 * 179.97438 * 7 6 4 31 31 H 1.07997 * 120.00134 * 0.02562 * 16 15 14 32 32 H 1.08001 * 120.00346 * 180.29411 * 17 16 15 33 33 H 1.07992 * 120.00493 * 179.76903 * 18 17 16 34 34 H 1.08000 * 119.99498 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.99662 * 359.97438 * 20 15 14 36 36 H 1.09008 * 110.48557 * 236.21924 * 21 14 12 37 37 H 1.08994 * 110.48984 * 358.73612 * 21 14 12 38 38 H 1.09006 * 110.90849 * 97.38736 * 22 21 14 39 39 H 1.09006 * 110.90884 * 220.98246 * 22 21 14 40 40 H 1.09001 * 110.52172 * 278.38463 * 23 22 21 41 41 H 1.09002 * 110.77472 * 155.50213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1267 2.8775 -1.6728 7 7 3.3455 3.2575 -2.9128 8 14 3.7336 3.9289 -0.2530 9 1 5.1068 3.5072 0.1236 10 1 3.7494 5.3555 -0.6649 11 1 2.8271 3.7598 0.9110 12 6 2.1390 -1.1671 0.0005 13 8 3.3482 -1.1690 0.0939 14 6 1.3900 -2.4697 -0.1150 15 6 0.4932 -2.6529 1.0821 16 6 -0.8601 -2.3905 0.9786 17 6 -1.6835 -2.5636 2.0752 18 6 -1.1520 -2.9886 3.2785 19 6 0.2023 -3.2455 3.3836 20 6 1.0247 -3.0778 2.2853 21 6 0.5487 -2.4776 -1.4061 22 6 1.1350 -3.6445 -2.2375 23 6 2.5432 -3.8141 -1.6068 24 8 2.3177 -3.5642 -0.2029 25 1 -0.3633 0.0479 1.0265 26 1 -0.3633 0.8650 -0.5548 27 1 -0.3632 -0.9131 -0.4718 28 1 1.6084 2.0285 0.5137 29 1 3.1499 1.1386 0.5138 30 1 3.8223 4.0834 -3.0900 31 1 -1.2747 -2.0546 0.0396 32 1 -2.7416 -2.3631 1.9931 33 1 -1.7947 -3.1202 4.1364 34 1 0.6174 -3.5779 4.3236 35 1 2.0827 -3.2789 2.3673 36 1 -0.5007 -2.6624 -1.1765 37 1 0.6610 -1.5343 -1.9405 38 1 0.5407 -4.5494 -2.1108 39 1 1.2083 -3.3733 -3.2908 40 1 3.2376 -3.0827 -2.0203 41 1 2.9166 -4.8264 -1.7614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930595702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -44.755490 kcal Electronic energy + Delta-G solvation = -24176.817535 eV Core-core repulsion = 20829.032309 eV Total energy + Delta-G solvation = -3347.785226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33342 -39.72010 -39.18821 -36.85682 -34.96002 -33.75653 -32.87814 -31.77201 -30.49520 -29.05777 -27.66573 -25.47561 -24.22315 -23.77312 -22.70172 -21.91948 -20.19115 -19.20787 -18.82009 -17.80454 -17.49048 -16.94992 -16.58370 -16.31401 -15.97783 -15.80617 -15.59626 -15.14547 -14.74444 -14.50825 -14.29139 -14.10116 -13.94797 -13.71460 -13.63053 -13.17197 -13.14207 -12.95855 -12.57495 -12.45669 -12.23816 -12.16659 -12.03060 -11.90558 -11.76938 -11.74284 -11.33200 -10.87174 -10.46677 -9.80109 -9.62813 -9.46805 -8.38291 -6.43423 0.33650 0.50355 1.28581 1.32829 1.41098 1.60455 2.07993 2.26981 2.69837 2.94026 2.96465 3.32892 3.44599 3.56600 3.85464 4.01032 4.07846 4.14798 4.20185 4.35247 4.39048 4.52802 4.56005 4.60269 4.66151 4.67282 4.73638 4.79989 4.83866 4.87695 4.91719 5.02629 5.07504 5.14858 5.39730 5.48848 5.53448 5.55857 5.62478 5.78066 6.09220 6.18992 6.55681 6.57117 7.14706 7.28740 8.78167 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005809 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.903124 B = 4818.641773 C = 5528.159883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.594 5.594 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.034 0.966 6 C 0.016 3.984 7 N -0.940 5.940 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.241 1.241 12 C 0.491 3.509 13 O -0.588 6.588 14 C 0.138 3.862 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.140 4.140 23 C 0.032 3.968 24 O -0.361 6.361 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.052 0.948 29 H 0.013 0.987 30 H 0.270 0.730 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -14.670 9.226 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.326 5.326 3 C 0.100 3.900 4 C -0.575 4.575 5 H 0.052 0.948 6 C -0.182 4.182 7 N -0.580 5.580 8 Si 0.765 3.235 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.164 1.164 12 C 0.279 3.721 13 O -0.468 6.468 14 C 0.095 3.905 15 C -0.096 4.096 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.193 4.193 22 C -0.177 4.177 23 C -0.045 4.045 24 O -0.279 6.279 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.631 -14.628 9.347 22.702 hybrid contribution 1.437 1.000 -0.184 1.760 sum -13.194 -13.628 9.163 21.065 Atomic orbital electron populations 1.22759 0.77929 1.04936 1.02843 1.47824 1.08353 1.05491 1.70937 1.19376 0.92567 0.82281 0.95804 1.21482 1.37065 1.06913 0.92005 0.94795 1.25765 0.95170 0.98807 0.98495 1.70025 1.42489 1.24481 1.20998 0.85792 0.79460 0.78144 0.80062 1.20506 1.19436 1.16422 1.21595 0.87807 0.86639 0.76066 1.90609 1.16637 1.87776 1.51806 1.20710 0.88285 0.84439 0.97103 1.19397 0.94217 1.03044 0.92972 1.21534 0.91168 0.99453 1.01092 1.21521 1.01185 0.98425 0.91967 1.21597 0.94691 0.97623 0.99014 1.21372 0.94620 1.00335 0.98117 1.21009 0.99713 0.99319 0.93398 1.23435 1.02140 1.00730 0.93041 1.23189 0.95023 0.99094 1.00412 1.23873 0.97856 1.02396 0.80326 1.88896 1.64222 1.48631 1.26158 0.90964 0.90841 0.87821 0.93052 0.96936 0.92135 0.82734 0.82022 0.82846 0.84438 0.88502 0.84926 0.91170 0.87123 0.88614 0.95019 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.74 8.10 127.77 1.04 2.78 16 2 N -0.59 -25.96 2.76 -851.12 -2.35 -28.31 16 3 C 0.22 11.39 4.28 85.63 0.37 11.76 16 4 C -0.54 -32.08 9.94 25.60 0.25 -31.83 16 5 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 6 C 0.02 0.97 5.47 84.65 0.46 1.43 16 7 N -0.94 -59.50 13.96 21.44 0.30 -59.20 16 8 Si 0.94 45.39 27.47 68.60 1.88 47.28 16 9 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 12 C 0.49 22.45 6.29 87.66 0.55 23.00 16 13 O -0.59 -33.18 16.09 15.59 0.25 -32.93 16 14 C 0.14 4.73 0.69 -11.92 -0.01 4.72 16 15 C -0.10 -2.72 4.29 -19.87 -0.09 -2.80 16 16 C -0.12 -2.30 6.30 22.27 0.14 -2.16 16 17 C -0.11 -1.74 10.05 22.27 0.22 -1.51 16 18 C -0.11 -1.81 10.05 22.27 0.22 -1.58 16 19 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 20 C -0.12 -3.39 9.36 22.27 0.21 -3.18 16 21 C -0.16 -4.16 4.32 31.58 0.14 -4.02 16 22 C -0.14 -3.20 7.17 31.97 0.23 -2.97 16 23 C 0.03 0.96 7.67 72.74 0.56 1.51 16 24 O -0.36 -13.25 9.87 -130.36 -1.29 -14.54 16 25 H 0.07 1.90 7.39 -2.39 -0.02 1.89 16 26 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 27 H 0.10 2.56 1.94 -2.38 0.00 2.56 16 28 H 0.05 2.41 7.13 -2.39 -0.02 2.39 16 29 H 0.01 0.70 6.78 -2.39 -0.02 0.69 16 30 H 0.27 15.84 8.31 -92.72 -0.77 15.07 16 31 H 0.16 2.35 4.37 -2.91 -0.01 2.34 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.10 3.29 7.87 -2.91 -0.02 3.27 16 36 H 0.13 2.42 5.04 -2.38 -0.01 2.41 16 37 H 0.07 2.21 6.80 -2.39 -0.02 2.20 16 38 H 0.11 1.85 8.14 -2.38 -0.02 1.84 16 39 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -83.54 323.43 4.30 -79.23 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.98 Total: 15.83 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.52 Total: -7.35 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -2.05 Total: -87.51 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.04 Total: -47.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -83.54 4.30 -79.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930595702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.476 kcal (2) G-P(sol) polarization free energy of solvation -83.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds