Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47124 * 2 1 4 4 C 1.37097 * 119.99712 * 83.42029 * 3 2 1 5 5 H 1.08004 * 120.00087 * 170.17634 * 4 3 2 6 6 C 1.38945 * 120.00297 * 350.17643 * 4 3 2 7 7 N 1.31408 * 120.00032 * 0.19976 * 6 4 3 8 8 Si 1.86799 * 120.00316 * 180.20061 * 6 4 3 9 9 H 1.48495 * 109.47366 * 89.99904 * 8 6 4 10 10 H 1.48501 * 109.47487 * 210.00384 * 8 6 4 11 11 H 1.48511 * 109.46971 * 329.99914 * 8 6 4 12 12 C 1.34777 * 120.00332 * 263.41988 * 3 2 1 13 13 O 1.21289 * 119.99549 * 7.31901 * 12 3 2 14 14 C 1.50697 * 119.99997 * 187.31994 * 12 3 2 15 15 C 1.50698 * 109.82433 * 285.09013 * 14 12 3 16 16 C 1.38238 * 120.00377 * 292.53074 * 15 14 12 17 17 C 1.38231 * 120.00441 * 179.76347 * 16 15 14 18 18 C 1.38237 * 119.99792 * 0.50829 * 17 16 15 19 19 C 1.38235 * 119.99775 * 359.74597 * 18 17 16 20 20 C 1.38234 * 120.00380 * 359.97438 * 19 18 17 21 21 C 1.54383 * 109.90359 * 164.16080 * 14 12 3 22 22 C 1.55566 * 102.27291 * 261.79834 * 21 14 12 23 23 C 1.54951 * 100.82576 * 325.88135 * 22 21 14 24 24 O 1.43232 * 109.83208 * 45.97826 * 14 12 3 25 25 H 1.09002 * 109.47241 * 309.26124 * 1 2 3 26 26 H 1.09005 * 109.47403 * 69.26375 * 1 2 3 27 27 H 1.09001 * 109.47148 * 189.26018 * 1 2 3 28 28 H 1.08997 * 109.46999 * 240.00084 * 2 1 3 29 29 H 1.08996 * 109.46865 * 120.00479 * 2 1 3 30 30 H 0.97001 * 120.00519 * 179.97438 * 7 6 4 31 31 H 1.08007 * 119.99653 * 359.97438 * 16 15 14 32 32 H 1.07998 * 120.00391 * 180.22838 * 17 16 15 33 33 H 1.07998 * 120.00163 * 179.72395 * 18 17 16 34 34 H 1.08008 * 119.99767 * 179.97438 * 19 18 17 35 35 H 1.07995 * 120.00160 * 179.97438 * 20 19 18 36 36 H 1.08998 * 110.84982 * 19.98666 * 21 14 12 37 37 H 1.09002 * 110.84961 * 143.40754 * 21 14 12 38 38 H 1.09004 * 111.22621 * 207.98644 * 22 21 14 39 39 H 1.08999 * 111.13506 * 83.74314 * 22 21 14 40 40 H 1.08997 * 110.31035 * 277.47881 * 23 22 21 41 41 H 1.09000 * 110.30819 * 155.40618 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1185 2.0727 1.1795 5 1 2.6233 3.0272 1.2047 6 6 1.5707 1.5458 2.3426 7 7 0.9600 0.3826 2.3129 8 14 1.7023 2.4907 3.9486 9 1 0.5255 3.3844 4.0950 10 1 1.7418 1.5343 5.0839 11 1 2.9445 3.3046 3.9437 12 6 2.3690 1.9720 -1.1595 13 8 2.1570 1.4116 -2.2140 14 6 3.0246 3.3288 -1.1456 15 6 1.9981 4.3893 -0.8413 16 6 0.9963 4.6637 -1.7535 17 6 0.0518 5.6331 -1.4722 18 6 0.1152 6.3354 -0.2832 19 6 1.1200 6.0647 0.6267 20 6 2.0612 5.0913 0.3479 21 6 3.6784 3.6107 -2.5155 22 6 5.1665 3.2405 -2.2541 23 6 5.3188 3.6743 -0.7744 24 8 4.0608 3.3578 -0.1572 25 1 -0.3634 0.6504 0.7957 26 1 -0.3634 0.3639 -0.9611 27 1 -0.3633 -1.0143 0.1654 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 0.5778 0.0145 3.1249 31 1 0.9496 4.1183 -2.6846 32 1 -0.7330 5.8449 -2.1832 33 1 -0.6201 7.0958 -0.0654 34 1 1.1698 6.6137 1.5555 35 1 2.8464 4.8801 1.0586 36 1 3.2501 2.9725 -3.2884 37 1 3.5786 4.6624 -2.7839 38 1 5.8343 3.8096 -2.9010 39 1 5.3309 2.1690 -2.3683 40 1 5.5119 4.7453 -0.7121 41 1 6.1250 3.1167 -0.2977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -40.231609 kcal Electronic energy + Delta-G solvation = -24906.576596 eV Core-core repulsion = 21558.987540 eV Total energy + Delta-G solvation = -3347.589056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83386 -39.57300 -39.03572 -37.08387 -33.43821 -33.32902 -32.87154 -31.62725 -31.38543 -29.01477 -26.72337 -25.03929 -23.83464 -23.55294 -22.28837 -22.13687 -20.72262 -19.20486 -18.51128 -17.75514 -16.69562 -16.60553 -16.31667 -16.07880 -15.60408 -15.49055 -15.33203 -14.83945 -14.65968 -14.36673 -14.22079 -13.95445 -13.58640 -13.46828 -13.08198 -12.87079 -12.78480 -12.75861 -12.47509 -12.27882 -12.13420 -12.00172 -11.79964 -11.76051 -11.73458 -11.63094 -11.11182 -10.74248 -10.15615 -9.71901 -9.70251 -9.36042 -8.05691 -5.72801 0.49938 0.59997 1.40756 1.46456 1.57084 1.94200 2.33193 2.81203 2.91831 3.05135 3.28209 3.62706 3.72835 4.05405 4.13252 4.20205 4.25935 4.30083 4.36761 4.49988 4.58433 4.72505 4.75851 4.82890 4.85962 4.88514 4.89534 4.99014 5.05678 5.10843 5.15147 5.21094 5.25351 5.51026 5.62682 5.64775 5.69372 5.76334 5.86847 5.96262 6.17184 6.20677 6.64118 7.21828 7.66240 8.02554 8.82634 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.009099 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.741036 B = 3076.397936 C = 3652.650043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.134 3.866 3 N -0.434 5.434 4 C -0.319 4.319 5 H 0.130 0.870 6 C -0.019 4.019 7 N -0.894 5.894 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.438 3.562 13 O -0.638 6.638 14 C 0.155 3.845 15 C -0.087 4.087 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.131 4.131 22 C -0.144 4.144 23 C 0.035 3.965 24 O -0.368 6.368 25 H 0.066 0.934 26 H 0.003 0.997 27 H 0.051 0.949 28 H 0.021 0.979 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 11.351 -2.983 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 N -0.150 5.150 4 C -0.447 4.447 5 H 0.147 0.853 6 C -0.217 4.217 7 N -0.536 5.536 8 Si 0.801 3.199 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.184 1.184 12 C 0.226 3.774 13 O -0.528 6.528 14 C 0.112 3.888 15 C -0.088 4.088 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.169 4.169 22 C -0.181 4.181 23 C -0.040 4.040 24 O -0.287 6.287 25 H 0.084 0.916 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.423 10.881 -3.070 11.812 hybrid contribution -0.125 -0.429 0.621 0.765 sum 3.298 10.452 -2.449 11.230 Atomic orbital electron populations 1.21769 0.95988 1.00922 0.97826 1.21396 0.95190 0.83256 0.99071 1.44076 1.52890 1.11678 1.06311 1.20658 1.34215 1.04870 0.84948 0.85274 1.26019 0.96082 0.97395 1.02245 1.70362 1.36830 1.17971 1.28408 0.85137 0.79120 0.78082 0.77541 1.20029 1.20927 1.18369 1.20553 0.85075 0.88427 0.83307 1.90453 1.63602 1.67115 1.31680 1.20578 0.88039 0.90370 0.89789 1.19853 0.96914 0.96121 0.95897 1.21005 0.95440 0.98759 0.99301 1.21320 0.98577 0.96046 0.98394 1.21451 0.98589 1.00241 0.93668 1.21431 0.95038 0.97956 1.00363 1.21052 0.99630 0.95434 0.95694 1.23095 0.95856 1.02947 0.94987 1.23255 0.95693 1.01950 0.97203 1.23694 0.86475 1.01121 0.92756 1.88600 1.16760 1.91320 1.32022 0.91562 0.97836 0.93019 0.96112 0.88515 0.92632 0.87249 0.83829 0.83121 0.84001 0.86125 0.90079 0.88570 0.86438 0.92138 0.90097 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.38 9.21 71.98 0.66 -4.72 16 2 C 0.13 7.12 5.43 86.38 0.47 7.59 16 3 N -0.43 -23.33 2.64 -635.57 -1.68 -25.00 16 4 C -0.32 -16.66 8.28 84.04 0.70 -15.97 16 5 H 0.13 6.44 2.75 -2.91 -0.01 6.43 16 6 C -0.02 -0.95 5.20 84.93 0.44 -0.51 16 7 N -0.89 -46.62 7.28 21.66 0.16 -46.46 16 8 Si 0.98 40.81 29.55 68.60 2.03 42.83 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 12 C 0.44 22.44 6.46 87.66 0.57 23.01 16 13 O -0.64 -35.31 14.96 -3.06 -0.05 -35.35 16 14 C 0.15 6.43 0.62 -11.82 -0.01 6.42 16 15 C -0.09 -3.41 4.05 -19.87 -0.08 -3.49 16 16 C -0.13 -4.62 8.96 22.27 0.20 -4.42 16 17 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 18 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 19 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 20 C -0.10 -3.66 8.04 22.27 0.18 -3.48 16 21 C -0.13 -4.49 5.46 31.95 0.17 -4.31 16 22 C -0.14 -4.08 7.18 32.15 0.23 -3.85 16 23 C 0.04 1.04 7.77 72.65 0.56 1.61 16 24 O -0.37 -14.84 6.94 -148.98 -1.03 -15.87 16 25 H 0.07 3.57 6.09 -2.39 -0.01 3.56 16 26 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.02 1.11 7.34 -2.39 -0.02 1.09 16 29 H 0.10 5.33 6.00 -2.39 -0.01 5.32 16 30 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 31 H 0.11 4.09 7.90 -2.91 -0.02 4.07 16 32 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.12 4.55 6.18 -2.91 -0.02 4.54 16 36 H 0.08 3.11 6.69 -2.39 -0.02 3.10 16 37 H 0.10 2.81 7.75 -2.39 -0.02 2.79 16 38 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -64.69 321.50 5.23 -59.46 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 1.03 Total: 32.88 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.77 Total: -12.49 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.52 Total: -71.47 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.08 Total: -51.23 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -64.69 5.23 -59.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.232 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds