Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20757 * 120.00523 * 2 1 4 4 C 1.50708 * 119.99990 * 180.27077 * 2 1 3 5 5 H 1.08998 * 109.87421 * 343.54498 * 4 2 1 6 6 C 1.54311 * 109.88914 * 222.34744 * 4 2 1 7 7 C 1.55139 * 103.01782 * 218.30699 * 6 4 2 8 8 C 1.54907 * 101.65090 * 35.65666 * 7 6 4 9 9 N 1.47443 * 109.88529 * 104.57845 * 4 2 1 10 10 C 1.46896 * 111.00232 * 356.14543 * 9 4 2 11 11 C 1.50699 * 109.47297 * 194.65187 * 10 9 4 12 12 C 1.38308 * 119.92849 * 269.73116 * 11 10 9 13 13 C 1.38098 * 120.06432 * 179.72214 * 12 11 10 14 14 C 1.38878 * 119.93344 * 0.55121 * 13 12 11 15 15 O 1.35751 * 120.07505 * 179.74903 * 14 13 12 16 16 C 1.34830 * 117.00340 * 185.59677 * 15 14 13 17 17 H 1.07998 * 119.99736 * 354.92719 * 16 15 14 18 18 C 1.38651 * 120.00080 * 174.92973 * 16 15 14 19 19 N 1.31564 * 120.00044 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00224 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46774 * 59.99952 * 20 18 16 22 22 H 1.48498 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47237 * 300.00254 * 20 18 16 24 24 C 1.38878 * 119.86059 * 359.72242 * 14 13 12 25 25 C 1.38101 * 119.93203 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47175 * 179.72805 * 1 2 3 27 27 H 1.08997 * 109.46937 * 299.73239 * 1 2 3 28 28 H 1.09004 * 109.46643 * 59.72373 * 1 2 3 29 29 H 1.08997 * 110.70971 * 336.68998 * 6 4 2 30 30 H 1.09003 * 110.70560 * 99.92612 * 6 4 2 31 31 H 1.08994 * 110.99563 * 277.56431 * 7 6 4 32 32 H 1.09004 * 110.99308 * 153.74542 * 7 6 4 33 33 H 1.09005 * 110.37386 * 204.09673 * 8 7 6 34 34 H 1.08997 * 110.37208 * 81.75941 * 8 7 6 35 35 H 1.08997 * 109.47825 * 314.65506 * 10 9 4 36 36 H 1.09004 * 109.46855 * 74.65298 * 10 9 4 37 37 H 1.07993 * 119.96856 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.03343 * 180.27305 * 13 12 11 39 39 H 0.96992 * 119.99958 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.03770 * 179.97438 * 24 14 13 41 41 H 1.08000 * 119.96852 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0062 5 1 1.5944 -2.1190 0.2804 6 6 3.4518 -1.2282 0.9717 7 6 4.5675 -2.0056 0.2251 8 6 4.2872 -1.6174 -1.2481 9 7 2.8135 -1.5586 -1.3493 10 6 2.3918 -0.5187 -2.2971 11 6 2.6603 -0.9836 -3.7052 12 6 3.8753 -0.7044 -4.3042 13 6 4.1266 -1.1340 -5.5924 14 6 3.1535 -1.8372 -6.2905 15 8 3.3955 -2.2564 -7.5588 16 6 2.3702 -2.8304 -8.2200 17 1 1.4349 -3.0134 -7.7118 18 6 2.5164 -3.1856 -9.5522 19 7 3.6556 -2.9622 -10.1713 20 14 1.0962 -3.9814 -10.4681 21 1 -0.0700 -3.0620 -10.4679 22 1 1.5048 -4.2616 -11.8680 23 1 0.7244 -5.2527 -9.7965 24 6 1.9324 -2.1109 -5.6883 25 6 1.6891 -1.6831 -4.3980 26 1 -0.3633 -1.0276 -0.0049 27 1 -0.3633 0.5097 0.8924 28 1 -0.3633 0.5182 -0.8876 29 1 3.7483 -0.1925 1.1371 30 1 3.2077 -1.7158 1.9155 31 1 4.4606 -3.0802 0.3728 32 1 5.5554 -1.6666 0.5370 33 1 4.6840 -2.3763 -1.9226 34 1 4.7222 -0.6437 -1.4733 35 1 1.3259 -0.3263 -2.1751 36 1 2.9506 0.3971 -2.1040 37 1 4.6302 -0.1541 -3.7622 38 1 5.0772 -0.9196 -6.0580 39 1 3.7581 -3.2111 -11.1032 40 1 1.1734 -2.6572 -6.2288 41 1 0.7399 -1.8961 -3.9290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137123805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -30.707983 kcal Electronic energy + Delta-G solvation = -22670.858679 eV Core-core repulsion = 19323.682599 eV Total energy + Delta-G solvation = -3347.176080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78050 -38.98827 -37.76746 -36.43768 -32.82648 -32.08330 -31.24811 -30.16151 -29.00990 -28.60091 -25.69722 -24.47255 -22.40225 -22.07247 -21.28488 -20.49482 -19.10726 -17.96682 -17.04668 -16.52948 -16.44929 -15.57172 -14.94660 -14.73168 -14.53836 -14.34827 -14.19712 -13.69854 -13.58796 -13.38059 -12.98081 -12.86759 -12.67488 -12.59269 -12.30352 -12.13950 -11.86424 -11.68997 -11.33605 -11.23300 -11.18326 -10.88023 -10.73948 -10.63426 -10.55261 -10.41893 -9.95766 -9.31788 -8.82105 -8.34593 -8.14866 -7.16282 -6.43905 -4.02768 1.64330 2.24296 2.30647 3.13834 3.14767 3.17724 3.75271 3.96170 3.98016 4.33507 4.52632 4.67481 4.84665 4.94123 5.10775 5.11787 5.14605 5.21132 5.27010 5.29337 5.38065 5.39394 5.59284 5.64381 5.67613 5.72313 5.75745 5.79589 5.90662 6.03086 6.05613 6.22899 6.42675 6.70965 6.80339 6.93056 6.95567 7.08488 7.24937 7.27642 7.42106 7.45990 7.84429 8.01216 9.01674 9.72095 10.74137 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.003331 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.395646 B = 8404.049706 C = 8842.080622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.347 3.653 3 O -0.457 6.457 4 C 0.020 3.980 5 H 0.105 0.895 6 C -0.134 4.134 7 C -0.127 4.127 8 C 0.043 3.957 9 N -0.496 5.496 10 C 0.095 3.905 11 C -0.177 4.177 12 C -0.065 4.065 13 C -0.193 4.193 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.235 4.235 25 C -0.050 4.050 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 2.287 20.262 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.222 3.778 3 O -0.330 6.330 4 C -0.088 4.088 5 H 0.123 0.877 6 C -0.172 4.172 7 C -0.165 4.165 8 C -0.084 4.084 9 N -0.222 5.222 10 C -0.031 4.031 11 C -0.178 4.178 12 C -0.084 4.084 13 C -0.212 4.212 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.069 4.069 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.690 2.357 19.683 20.164 hybrid contribution -0.597 0.240 -0.234 0.685 sum -4.287 2.597 19.449 20.084 Atomic orbital electron populations 1.22353 0.94240 1.04995 1.04719 1.25064 0.92478 0.90632 0.69677 1.90407 1.71968 1.35099 1.35505 1.23233 0.97702 0.96138 0.91762 0.87669 1.22813 0.94481 1.01838 0.98073 1.22710 0.98306 1.00730 0.94770 1.23140 0.87447 1.01223 0.96627 1.64148 1.09182 1.45085 1.03753 1.21248 0.99455 0.91943 0.90491 1.18961 0.96180 1.07943 0.94729 1.20463 0.95609 0.98408 0.93923 1.20159 0.99902 1.05664 0.95478 1.19389 0.92729 0.91372 0.86284 1.83976 1.37609 1.66342 1.20212 1.21284 0.92966 1.38975 0.93603 0.89106 1.25285 0.98192 0.97391 0.95627 1.70031 1.23937 1.44249 1.11626 0.85786 0.79761 0.79426 0.78493 1.19508 1.20292 1.19477 1.21141 0.98973 1.08664 0.96605 1.20529 0.97523 0.95397 0.93461 0.89631 0.89089 0.88859 0.90443 0.90473 0.90413 0.90654 0.89328 0.93244 0.91139 0.93596 0.87595 0.86613 0.91980 0.85584 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.57 9.84 36.00 0.35 -1.21 16 2 C 0.35 3.73 3.99 -29.03 -0.12 3.61 16 3 O -0.46 -6.41 15.63 6.00 0.09 -6.31 16 4 C 0.02 0.21 3.76 -67.88 -0.26 -0.05 16 5 H 0.11 0.90 7.84 -51.93 -0.41 0.49 16 6 C -0.13 -1.24 6.42 -24.91 -0.16 -1.40 16 7 C -0.13 -1.21 7.08 -24.59 -0.17 -1.38 16 8 C 0.04 0.53 5.84 -2.30 -0.01 0.52 16 9 N -0.50 -6.45 5.12 -226.17 -1.16 -7.61 16 10 C 0.10 1.39 3.86 -4.98 -0.02 1.37 16 11 C -0.18 -3.09 5.18 -104.57 -0.54 -3.63 16 12 C -0.07 -1.19 9.11 -39.61 -0.36 -1.55 16 13 C -0.19 -4.13 9.99 -39.40 -0.39 -4.53 16 14 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 15 O -0.18 -5.12 9.76 0.04 0.00 -5.12 16 16 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 19 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 20 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 25 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 26 H 0.08 0.51 7.80 -51.93 -0.40 0.10 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.73 7.98 -51.93 -0.41 0.32 16 29 H 0.08 0.82 7.12 -51.93 -0.37 0.45 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.64 7.33 -51.93 -0.38 0.26 16 35 H 0.07 0.95 6.05 -51.93 -0.31 0.64 16 36 H 0.05 0.71 6.71 -51.93 -0.35 0.36 16 37 H 0.11 1.69 7.84 -52.49 -0.41 1.27 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -31.89 335.26 -8.48 -40.37 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.71 Total: 4.05 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.49 Total: -21.25 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.40 Total: -32.29 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.89 -8.48 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.657 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds