Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20757 * 120.00523 * 2 1 4 4 C 1.50708 * 119.99990 * 180.27077 * 2 1 3 5 5 H 1.08998 * 109.87421 * 343.54498 * 4 2 1 6 6 C 1.54311 * 109.88914 * 222.34744 * 4 2 1 7 7 C 1.55139 * 103.01782 * 218.30699 * 6 4 2 8 8 C 1.54907 * 101.65090 * 35.65666 * 7 6 4 9 9 N 1.47443 * 109.88529 * 104.57845 * 4 2 1 10 10 C 1.46896 * 111.00232 * 356.14543 * 9 4 2 11 11 C 1.50699 * 109.47297 * 194.65187 * 10 9 4 12 12 C 1.38308 * 119.92849 * 269.73116 * 11 10 9 13 13 C 1.38098 * 120.06432 * 179.72214 * 12 11 10 14 14 C 1.38878 * 119.93344 * 0.55121 * 13 12 11 15 15 O 1.35751 * 120.07505 * 179.74903 * 14 13 12 16 16 C 1.34830 * 117.00340 * 185.59677 * 15 14 13 17 17 H 1.07998 * 119.99736 * 354.92719 * 16 15 14 18 18 C 1.38651 * 120.00080 * 174.92973 * 16 15 14 19 19 N 1.31564 * 120.00044 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00224 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46774 * 59.99952 * 20 18 16 22 22 H 1.48498 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47237 * 300.00254 * 20 18 16 24 24 C 1.38878 * 119.86059 * 359.72242 * 14 13 12 25 25 C 1.38101 * 119.93203 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47175 * 179.72805 * 1 2 3 27 27 H 1.08997 * 109.46937 * 299.73239 * 1 2 3 28 28 H 1.09004 * 109.46643 * 59.72373 * 1 2 3 29 29 H 1.08997 * 110.70971 * 336.68998 * 6 4 2 30 30 H 1.09003 * 110.70560 * 99.92612 * 6 4 2 31 31 H 1.08994 * 110.99563 * 277.56431 * 7 6 4 32 32 H 1.09004 * 110.99308 * 153.74542 * 7 6 4 33 33 H 1.09005 * 110.37386 * 204.09673 * 8 7 6 34 34 H 1.08997 * 110.37208 * 81.75941 * 8 7 6 35 35 H 1.08997 * 109.47825 * 314.65506 * 10 9 4 36 36 H 1.09004 * 109.46855 * 74.65298 * 10 9 4 37 37 H 1.07993 * 119.96856 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.03343 * 180.27305 * 13 12 11 39 39 H 0.96992 * 119.99958 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.03770 * 179.97438 * 24 14 13 41 41 H 1.08000 * 119.96852 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0062 5 1 1.5944 -2.1190 0.2804 6 6 3.4518 -1.2282 0.9717 7 6 4.5675 -2.0056 0.2251 8 6 4.2872 -1.6174 -1.2481 9 7 2.8135 -1.5586 -1.3493 10 6 2.3918 -0.5187 -2.2971 11 6 2.6603 -0.9836 -3.7052 12 6 3.8753 -0.7044 -4.3042 13 6 4.1266 -1.1340 -5.5924 14 6 3.1535 -1.8372 -6.2905 15 8 3.3955 -2.2564 -7.5588 16 6 2.3702 -2.8304 -8.2200 17 1 1.4349 -3.0134 -7.7118 18 6 2.5164 -3.1856 -9.5522 19 7 3.6556 -2.9622 -10.1713 20 14 1.0962 -3.9814 -10.4681 21 1 -0.0700 -3.0620 -10.4679 22 1 1.5048 -4.2616 -11.8680 23 1 0.7244 -5.2527 -9.7965 24 6 1.9324 -2.1109 -5.6883 25 6 1.6891 -1.6831 -4.3980 26 1 -0.3633 -1.0276 -0.0049 27 1 -0.3633 0.5097 0.8924 28 1 -0.3633 0.5182 -0.8876 29 1 3.7483 -0.1925 1.1371 30 1 3.2077 -1.7158 1.9155 31 1 4.4606 -3.0802 0.3728 32 1 5.5554 -1.6666 0.5370 33 1 4.6840 -2.3763 -1.9226 34 1 4.7222 -0.6437 -1.4733 35 1 1.3259 -0.3263 -2.1751 36 1 2.9506 0.3971 -2.1040 37 1 4.6302 -0.1541 -3.7622 38 1 5.0772 -0.9196 -6.0580 39 1 3.7581 -3.2111 -11.1032 40 1 1.1734 -2.6572 -6.2288 41 1 0.7399 -1.8961 -3.9290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137123805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -51.326246 kcal Electronic energy + Delta-G solvation = -22671.752754 eV Core-core repulsion = 19323.682599 eV Total energy + Delta-G solvation = -3348.070155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72118 -40.69713 -38.90701 -37.99120 -34.45109 -33.61387 -32.07392 -31.78405 -30.33226 -29.41643 -27.55659 -25.91085 -23.70723 -23.23023 -22.46255 -21.82342 -20.02478 -19.84312 -18.83160 -17.55849 -17.37506 -16.63417 -16.42584 -16.20556 -15.76661 -15.60326 -15.49048 -15.30131 -15.00735 -14.77439 -14.39579 -14.12130 -13.79324 -13.57599 -13.38154 -13.34299 -13.07688 -12.86241 -12.73225 -12.47665 -12.36573 -12.15919 -12.13911 -12.04450 -11.98079 -11.63757 -11.17169 -10.80214 -10.77696 -9.78737 -9.37743 -8.91432 -8.46331 -6.14811 0.58484 0.63193 0.86247 1.36048 1.46918 1.52563 2.18956 2.72108 3.00013 3.02950 3.26500 3.49473 3.57599 3.69148 3.97826 4.02046 4.14305 4.19016 4.21914 4.34234 4.42096 4.49776 4.53002 4.59117 4.62797 4.62918 4.76588 4.88379 4.90551 4.99956 5.05019 5.10243 5.15492 5.15789 5.27381 5.29991 5.53882 5.70123 5.74450 5.90614 5.92718 6.03162 6.20340 6.46573 6.98164 7.78710 8.76823 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.003331 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.395646 B = 8404.049706 C = 8842.080622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.347 3.653 3 O -0.496 6.496 4 C 0.016 3.984 5 H 0.133 0.867 6 C -0.130 4.130 7 C -0.120 4.120 8 C 0.036 3.964 9 N -0.504 5.504 10 C 0.102 3.898 11 C -0.153 4.153 12 C -0.060 4.060 13 C -0.204 4.204 14 C 0.116 3.884 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.240 4.240 25 C -0.047 4.047 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.273 0.727 40 H 0.122 0.878 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 1.844 23.340 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.224 3.776 3 O -0.371 6.371 4 C -0.092 4.092 5 H 0.150 0.850 6 C -0.168 4.168 7 C -0.158 4.158 8 C -0.092 4.092 9 N -0.230 5.230 10 C -0.025 4.025 11 C -0.154 4.154 12 C -0.079 4.079 13 C -0.223 4.223 14 C 0.066 3.934 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.259 4.259 25 C -0.065 4.065 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.150 0.850 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.055 1.921 22.831 23.698 hybrid contribution 0.177 0.510 -0.815 0.978 sum -5.879 2.431 22.016 22.917 Atomic orbital electron populations 1.22396 0.91591 1.06746 1.05357 1.25532 0.93976 0.89998 0.68091 1.90411 1.72990 1.36336 1.37343 1.23445 0.98441 0.97026 0.90293 0.84961 1.22808 0.93840 1.01162 0.99009 1.22694 0.99110 1.01404 0.92569 1.23174 0.87212 1.00304 0.98501 1.64075 1.09565 1.44140 1.05172 1.21159 1.00561 0.91938 0.88856 1.19422 0.94981 1.04912 0.96114 1.20760 0.96779 0.97674 0.92641 1.20366 0.99465 1.05792 0.96671 1.19907 0.94747 0.93079 0.85699 1.83942 1.38757 1.68888 1.22321 1.21815 0.93541 1.39339 0.94398 0.87944 1.26614 1.01337 0.97840 0.96252 1.70185 1.26754 1.46942 1.12154 0.84643 0.75922 0.78772 0.76861 1.18106 1.19715 1.17990 1.21260 0.97923 1.08789 0.97936 1.20880 0.99195 0.94375 0.92043 0.87372 0.87624 0.88913 0.91998 0.87813 0.89393 0.89602 0.90790 0.94203 0.89374 0.94401 0.84989 0.87088 0.91843 0.86013 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 9.84 71.23 0.70 -1.57 16 2 C 0.35 6.32 3.99 29.10 0.12 6.43 16 3 O -0.50 -12.88 15.63 -1.44 -0.02 -12.90 16 4 C 0.02 0.27 3.76 44.51 0.17 0.44 16 5 H 0.13 1.57 7.84 -2.39 -0.02 1.56 16 6 C -0.13 -1.99 6.42 31.77 0.20 -1.78 16 7 C -0.12 -1.94 7.08 31.98 0.23 -1.72 16 8 C 0.04 0.81 5.84 86.77 0.51 1.32 16 9 N -0.50 -11.56 5.12 -869.46 -4.45 -16.01 16 10 C 0.10 2.67 3.86 85.56 0.33 3.00 16 11 C -0.15 -5.03 5.18 -19.83 -0.10 -5.13 16 12 C -0.06 -2.15 9.11 22.25 0.20 -1.94 16 13 C -0.20 -9.00 9.99 22.39 0.22 -8.78 16 14 C 0.12 5.90 6.65 22.58 0.15 6.05 16 15 O -0.23 -14.21 9.76 -22.75 -0.22 -14.44 16 16 C -0.41 -24.35 9.49 67.92 0.64 -23.71 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 18 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 19 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 20 Si 1.02 42.87 29.55 68.60 2.03 44.89 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 C -0.24 -10.52 9.17 22.39 0.21 -10.32 16 25 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 26 H 0.11 0.72 7.80 -2.39 -0.02 0.71 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.11 7.98 -2.38 -0.02 1.09 16 29 H 0.06 1.17 7.12 -2.39 -0.02 1.15 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.04 0.97 7.33 -2.39 -0.02 0.96 16 35 H 0.09 2.03 6.05 -2.39 -0.01 2.01 16 36 H 0.04 1.09 6.71 -2.39 -0.02 1.07 16 37 H 0.13 4.02 7.84 -2.91 -0.02 4.00 16 38 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -74.19 335.26 2.92 -71.27 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.03 Total: 24.00 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.26 Total: -39.98 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -4.15 Total: -72.86 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.24 Total: -27.34 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.19 2.92 -71.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.948 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds