Wall clock time and date at job start Tue Mar 31 2020 06:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05883 * 359.76356 * 7 6 5 9 9 C 1.50701 * 120.02891 * 180.25589 * 8 7 6 10 10 H 1.08997 * 110.88092 * 182.65904 * 9 8 7 11 11 C 1.55149 * 111.00383 * 58.78077 * 9 8 7 12 12 C 1.54325 * 102.94236 * 206.42023 * 11 9 8 13 13 N 1.47020 * 107.26787 * 22.19669 * 12 11 9 14 14 C 1.34782 * 125.64591 * 181.01546 * 13 12 11 15 15 O 1.21287 * 119.99446 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00011 * 0.02562 * 14 13 12 17 17 C 1.50709 * 109.46880 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99377 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99504 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00430 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99626 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47198 * 60.00284 * 21 19 17 23 23 H 1.48502 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47323 * 300.00435 * 21 19 17 25 25 C 1.47428 * 108.70574 * 1.05461 * 13 12 11 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 29 29 H 1.07996 * 120.03027 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.94685 * 180.02562 * 6 5 4 32 32 H 1.08009 * 119.96868 * 180.02562 * 7 6 5 33 33 H 1.09005 * 110.72435 * 324.78403 * 11 9 8 34 34 H 1.09007 * 110.72187 * 88.06066 * 11 9 8 35 35 H 1.08999 * 109.88019 * 141.61154 * 12 11 9 36 36 H 1.08994 * 109.88430 * 262.62301 * 12 11 9 37 37 H 1.09005 * 109.47096 * 300.00024 * 16 14 13 38 38 H 1.08991 * 109.46726 * 60.00482 * 16 14 13 39 39 H 0.97004 * 120.00141 * 180.02562 * 20 19 17 40 40 H 1.08990 * 110.36736 * 217.03420 * 25 13 12 41 41 H 1.09001 * 110.36065 * 94.71360 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0049 9 6 4.2538 0.0222 0.0113 10 1 3.6136 -0.8589 -0.0325 11 6 5.1852 -0.0284 1.2511 12 6 6.3497 -0.9208 0.7724 13 7 6.3607 -0.8730 -0.6970 14 6 7.2174 -1.5369 -1.4982 15 8 7.1339 -1.4220 -2.7027 16 6 8.2789 -2.4219 -0.8973 17 6 9.0981 -3.0428 -1.9993 18 1 8.8728 -2.8186 -3.0315 19 6 10.1358 -3.8962 -1.6897 20 7 10.4104 -4.1688 -0.4328 21 14 11.1508 -4.6665 -3.0557 22 1 11.7944 -3.5955 -3.8583 23 1 12.1970 -5.5385 -2.4636 24 1 10.2677 -5.4782 -3.9312 25 6 5.2800 0.0223 -1.1490 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0014 30 1 1.3340 4.5113 -0.0019 31 1 3.7922 4.6381 -0.0005 32 1 5.1344 2.5753 0.0008 33 1 5.5433 0.9692 1.5055 34 1 4.6739 -0.4838 2.0993 35 1 7.2934 -0.5398 1.1627 36 1 6.1952 -1.9452 1.1111 37 1 8.9272 -1.8264 -0.2544 38 1 7.8061 -3.2078 -0.3086 39 1 11.1407 -4.7689 -0.2150 40 1 4.8230 -0.3645 -2.0597 41 1 5.6654 1.0283 -1.3146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:41 Heat of formation + Delta-G solvation = -51.902389 kcal Electronic energy + Delta-G solvation = -22500.088568 eV Core-core repulsion = 19151.993429 eV Total energy + Delta-G solvation = -3348.095139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62557 -39.15644 -37.68069 -36.59848 -32.93606 -32.73842 -30.32811 -29.95762 -29.17233 -27.97081 -27.26924 -24.33911 -22.89234 -22.28614 -22.10732 -20.11609 -18.60740 -18.23843 -16.76079 -16.41234 -15.97114 -15.94309 -15.72649 -15.15147 -14.71359 -14.58531 -14.18036 -13.78693 -13.59918 -13.35569 -13.03576 -12.97712 -12.37399 -12.30116 -12.20925 -11.89720 -11.68247 -11.55375 -11.36522 -11.22100 -11.08789 -10.82330 -10.71356 -10.60097 -10.46755 -9.91352 -9.22186 -9.01032 -8.60330 -8.38898 -8.31340 -7.97911 -6.01458 -4.00837 1.11206 1.25552 3.06336 3.40656 3.42195 3.47577 3.53625 3.71291 3.75524 4.48993 4.52561 4.58168 4.72363 4.83613 4.84689 4.89197 4.97014 5.03756 5.20405 5.22087 5.28983 5.36584 5.44916 5.52296 5.56122 5.84081 5.85879 5.93583 6.07936 6.10819 6.14513 6.21055 6.29803 6.33016 6.48546 6.59185 6.95231 7.18533 7.26548 7.39197 8.00718 8.10975 8.46426 9.09552 9.27198 9.63881 11.10946 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.003129 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.295395 B = 8947.695333 C = 9125.291509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.087 4.087 6 C -0.155 4.155 7 C -0.076 4.076 8 C -0.096 4.096 9 C -0.058 4.058 10 H 0.098 0.902 11 C -0.121 4.121 12 C 0.106 3.894 13 N -0.634 5.634 14 C 0.530 3.470 15 O -0.545 6.545 16 C 0.012 3.988 17 C -0.509 4.509 18 H 0.074 0.926 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.115 3.885 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.262 0.738 40 H 0.072 0.928 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 14.198 7.027 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.105 4.105 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.097 4.097 9 C -0.077 4.077 10 H 0.116 0.884 11 C -0.159 4.159 12 C -0.017 4.017 13 N -0.372 5.372 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.027 4.027 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.008 4.008 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.968 13.883 6.411 25.151 hybrid contribution 0.207 -0.209 -0.508 0.587 sum -19.762 13.674 5.903 24.746 Atomic orbital electron populations 1.23054 0.78538 1.04006 1.01139 1.86104 1.21160 1.26724 1.88556 1.18837 0.91739 0.84272 0.96581 1.21192 0.99863 0.92374 1.09306 1.20908 0.94719 0.96844 0.97997 1.21047 0.93866 0.98400 1.03972 1.20944 1.00295 0.90981 0.97204 1.19028 0.90109 0.95279 1.05271 1.21174 0.95200 0.95642 0.95693 0.88381 1.22758 0.95378 1.00503 0.97261 1.21907 0.98448 1.00181 0.81202 1.48837 1.33550 1.48164 1.06620 1.21822 0.80942 0.78536 0.86429 1.90540 1.72055 1.64243 1.15253 1.19205 0.91519 0.93936 0.98035 1.21160 1.13704 1.26264 0.93619 0.90767 1.24996 0.97318 0.96502 0.95737 1.69950 1.30576 1.36700 1.16892 0.86487 0.79549 0.79121 0.81873 1.20120 1.21365 1.20122 1.22130 0.87386 0.94384 0.96881 0.88198 0.92769 0.92738 0.85616 0.86001 0.85879 0.85078 0.90627 0.90142 0.91330 0.91305 0.93528 0.93507 0.92881 0.90912 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.47 9.32 -19.41 -0.18 -3.65 16 3 C 0.13 1.48 6.66 -39.22 -0.26 1.22 16 4 C -0.21 -1.95 9.04 -39.43 -0.36 -2.31 16 5 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 6 C -0.15 -1.43 10.04 -39.56 -0.40 -1.83 16 7 C -0.08 -0.81 8.29 -39.60 -0.33 -1.14 16 8 C -0.10 -1.14 5.01 -104.47 -0.52 -1.66 16 9 C -0.06 -0.76 3.21 -89.63 -0.29 -1.05 16 10 H 0.10 1.37 7.11 -51.93 -0.37 1.00 16 11 C -0.12 -1.43 6.37 -24.90 -0.16 -1.59 16 12 C 0.11 1.61 6.49 -3.06 -0.02 1.59 16 13 N -0.63 -12.11 3.33 -170.52 -0.57 -12.67 16 14 C 0.53 12.94 7.84 -10.98 -0.09 12.85 16 15 O -0.54 -15.08 15.72 5.55 0.09 -14.99 16 16 C 0.01 0.32 4.65 -29.03 -0.14 0.19 16 17 C -0.51 -15.23 8.92 -34.44 -0.31 -15.54 16 18 H 0.07 2.31 6.75 -52.49 -0.35 1.96 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 21 Si 0.90 22.57 29.54 -169.99 -5.02 17.54 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.12 1.87 6.31 -2.53 -0.02 1.85 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.31 7.01 -52.48 -0.37 0.94 16 33 H 0.08 0.80 7.12 -51.93 -0.37 0.43 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.29 8.04 -51.93 -0.42 0.88 16 41 H 0.06 0.92 6.72 -51.93 -0.35 0.58 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -34.59 338.29 -8.10 -42.69 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.87 Total: -2.04 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.38 Total: -5.86 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.17 Total: -38.79 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.09 Total: -18.65 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.59 -8.10 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds