Wall clock time and date at job start Tue Mar 31 2020 06:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05883 * 359.76356 * 7 6 5 9 9 C 1.50701 * 120.02891 * 180.25589 * 8 7 6 10 10 H 1.08997 * 110.88092 * 182.65904 * 9 8 7 11 11 C 1.55149 * 111.00383 * 58.78077 * 9 8 7 12 12 C 1.54325 * 102.94236 * 206.42023 * 11 9 8 13 13 N 1.47020 * 107.26787 * 22.19669 * 12 11 9 14 14 C 1.34782 * 125.64591 * 181.01546 * 13 12 11 15 15 O 1.21287 * 119.99446 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00011 * 0.02562 * 14 13 12 17 17 C 1.50709 * 109.46880 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99377 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99504 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00430 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99626 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47198 * 60.00284 * 21 19 17 23 23 H 1.48502 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47323 * 300.00435 * 21 19 17 25 25 C 1.47428 * 108.70574 * 1.05461 * 13 12 11 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 29 29 H 1.07996 * 120.03027 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.94685 * 180.02562 * 6 5 4 32 32 H 1.08009 * 119.96868 * 180.02562 * 7 6 5 33 33 H 1.09005 * 110.72435 * 324.78403 * 11 9 8 34 34 H 1.09007 * 110.72187 * 88.06066 * 11 9 8 35 35 H 1.08999 * 109.88019 * 141.61154 * 12 11 9 36 36 H 1.08994 * 109.88430 * 262.62301 * 12 11 9 37 37 H 1.09005 * 109.47096 * 300.00024 * 16 14 13 38 38 H 1.08991 * 109.46726 * 60.00482 * 16 14 13 39 39 H 0.97004 * 120.00141 * 180.02562 * 20 19 17 40 40 H 1.08990 * 110.36736 * 217.03420 * 25 13 12 41 41 H 1.09001 * 110.36065 * 94.71360 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0049 9 6 4.2538 0.0222 0.0113 10 1 3.6136 -0.8589 -0.0325 11 6 5.1852 -0.0284 1.2511 12 6 6.3497 -0.9208 0.7724 13 7 6.3607 -0.8730 -0.6970 14 6 7.2174 -1.5369 -1.4982 15 8 7.1339 -1.4220 -2.7027 16 6 8.2789 -2.4219 -0.8973 17 6 9.0981 -3.0428 -1.9993 18 1 8.8728 -2.8186 -3.0315 19 6 10.1358 -3.8962 -1.6897 20 7 10.4104 -4.1688 -0.4328 21 14 11.1508 -4.6665 -3.0557 22 1 11.7944 -3.5955 -3.8583 23 1 12.1970 -5.5385 -2.4636 24 1 10.2677 -5.4782 -3.9312 25 6 5.2800 0.0223 -1.1490 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0014 30 1 1.3340 4.5113 -0.0019 31 1 3.7922 4.6381 -0.0005 32 1 5.1344 2.5753 0.0008 33 1 5.5433 0.9692 1.5055 34 1 4.6739 -0.4838 2.0993 35 1 7.2934 -0.5398 1.1627 36 1 6.1952 -1.9452 1.1111 37 1 8.9272 -1.8264 -0.2544 38 1 7.8061 -3.2078 -0.3086 39 1 11.1407 -4.7689 -0.2150 40 1 4.8230 -0.3645 -2.0597 41 1 5.6654 1.0283 -1.3146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:41 Heat of formation + Delta-G solvation = -73.199177 kcal Electronic energy + Delta-G solvation = -22501.012066 eV Core-core repulsion = 19151.993429 eV Total energy + Delta-G solvation = -3349.018637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51879 -40.61020 -38.76004 -37.86418 -35.13745 -33.98313 -31.36637 -31.02845 -30.84588 -29.23139 -27.99600 -26.09852 -24.30241 -23.50776 -22.90328 -21.12331 -20.22128 -19.02990 -18.57187 -17.78791 -17.53040 -16.83812 -16.72662 -16.60833 -16.20462 -15.84232 -15.33555 -15.22243 -14.63031 -14.43299 -14.29315 -14.15147 -13.79230 -13.71468 -13.56435 -13.14856 -12.90936 -12.81036 -12.59266 -12.54342 -12.47367 -12.31894 -12.02799 -11.95532 -11.61113 -11.55053 -11.45166 -10.63926 -10.59455 -9.75630 -9.60552 -9.05613 -8.26496 -6.34705 0.36366 0.52048 1.38988 1.42533 1.51106 1.80853 2.11922 2.42036 2.43778 2.78754 3.08113 3.56297 3.66388 3.69311 3.97417 4.13468 4.20249 4.27595 4.30465 4.35661 4.37581 4.41583 4.50520 4.59132 4.68305 4.72291 4.75842 4.85053 4.90087 5.01028 5.05695 5.10559 5.20407 5.25442 5.41301 5.46835 5.56931 5.64660 5.72261 5.89712 6.03464 6.49102 6.58309 6.78857 7.30508 7.41003 8.85612 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.003129 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.295395 B = 8947.695333 C = 9125.291509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.085 4.085 8 C -0.118 4.118 9 C -0.043 4.043 10 H 0.086 0.914 11 C -0.106 4.106 12 C 0.096 3.904 13 N -0.628 5.628 14 C 0.528 3.472 15 O -0.588 6.588 16 C 0.020 3.980 17 C -0.543 4.543 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.113 3.887 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.269 0.731 40 H 0.050 0.950 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.383 15.577 7.940 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.062 4.062 10 H 0.104 0.896 11 C -0.143 4.143 12 C -0.026 4.026 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.469 6.469 16 C -0.019 4.019 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.010 4.010 26 H 0.129 0.871 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.173 15.284 7.384 27.137 hybrid contribution 0.465 -0.580 -0.733 1.045 sum -20.708 14.703 6.651 26.253 Atomic orbital electron populations 1.23308 0.76643 1.05244 1.02275 1.86067 1.23271 1.27108 1.88660 1.19036 0.91792 0.85055 0.96983 1.21490 1.01019 0.91922 1.08484 1.21305 0.94812 0.97707 0.96334 1.21344 0.94337 0.98762 1.03223 1.21059 1.00636 0.91132 0.97459 1.18961 0.90518 0.94813 1.07572 1.20957 0.94375 0.96394 0.94458 0.89560 1.22742 0.93551 1.00832 0.97197 1.22219 1.00481 1.01264 0.78619 1.48703 1.32577 1.46776 1.08218 1.21335 0.81573 0.79018 0.86087 1.90502 1.73480 1.65986 1.16886 1.18986 0.91902 0.93959 0.97031 1.21355 1.15357 1.27859 0.93522 0.92825 1.25800 0.98052 0.96511 0.98335 1.70022 1.30984 1.36812 1.18427 0.85490 0.78150 0.78399 0.78920 1.19679 1.19548 1.19786 1.22316 0.87261 0.93823 0.97553 0.87083 0.91262 0.91854 0.83437 0.83178 0.83828 0.84876 0.88768 0.87915 0.90762 0.91388 0.94126 0.94327 0.92247 0.93146 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.19 9.32 -92.39 -0.86 -8.05 16 3 C 0.12 2.48 6.66 22.51 0.15 2.63 16 4 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 5 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 6 C -0.16 -2.51 10.04 22.28 0.22 -2.29 16 7 C -0.08 -1.66 8.29 22.25 0.18 -1.48 16 8 C -0.12 -2.66 5.01 -19.77 -0.10 -2.76 16 9 C -0.04 -1.10 3.21 -10.15 -0.03 -1.13 16 10 H 0.09 2.42 7.11 -2.39 -0.02 2.41 16 11 C -0.11 -2.33 6.37 31.78 0.20 -2.13 16 12 C 0.10 2.90 6.49 86.73 0.56 3.46 16 13 N -0.63 -24.56 3.33 -811.80 -2.70 -27.26 16 14 C 0.53 26.85 7.84 87.66 0.69 27.54 16 15 O -0.59 -34.11 15.72 -3.05 -0.05 -34.16 16 16 C 0.02 1.13 4.65 29.10 0.14 1.26 16 17 C -0.54 -33.51 8.92 25.60 0.23 -33.28 16 18 H 0.05 3.48 6.75 -2.91 -0.02 3.46 16 19 C 0.01 0.70 5.46 84.65 0.46 1.16 16 20 N -0.92 -55.21 13.29 21.44 0.28 -54.93 16 21 Si 0.97 46.47 29.54 68.60 2.03 48.50 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.11 3.73 6.31 86.85 0.55 4.28 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 30 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.13 2.45 7.01 -2.91 -0.02 2.43 16 33 H 0.09 1.77 7.12 -2.38 -0.02 1.75 16 34 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.04 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 41 H 0.07 2.21 6.72 -2.39 -0.02 2.20 16 Total: -1.00 -76.35 338.29 4.52 -71.84 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.02 Total: 9.62 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.79 Total: -5.55 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.42 Total: -82.19 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.91 Total: -42.21 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.35 4.52 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.361 kcal (2) G-P(sol) polarization free energy of solvation -76.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds